PowerPoint Presentation

Annotation as a curation tool for RRIDs

Anita BandrowskiForce11: April 2016

DefinitionsRRIDs are a group of unique persistent identifiers, used by authors during the publication process, mainly in neuroscience (obtained from scicrunch.org/resources).SciBot is a simple application that hooks into hypothesis, gets text from hypothesis and finds RRIDs in the text, then looks up the information about the RRID from the SciCrunch resolver and feeds the information to hypothes.is.SciCrunch resolver was created based on the work of the Neuroscience Information Framework in indexing multiple databases, aligning and structuring the data to make it compliant and it resolves RRIDs.

RRID Curation task:Find all papers that used RRIDsFind papers that have enough info to auto-generate RRIDs*Determine if the author is using the correct identifierCuration tags for RRIDs or the lack thereofPut data into SciCrunch systemsCan also release the data

Using Hypothes.is; SciBot

What does curation as annotation look like?

Annotations consist of:Hypothesis: URL for the article pageHypothesis: Tagged text in the articleSciBot: Any resolved or suspected RRIDsSciBot: Lookup of all resolved RRIDs including type links to database etcCurators: PubMed ID is always annotated, if it existsCurators: Paper is read, resources are found, RRIDs are assigned to each section of text whether the paper section contains RRIDs or not Curators: RRIDCUR tags are attached to each RRID (was the author correct?)

Come see this LiveBooth 40

Where are we?about half way!

Once curated, data can be used by anyone

http://www.sciencedirect.com/science/article/pii/S0969996114002526

W3C Open Data for RRIDsWe and Hypothes.is will make the complete RRID data set available in the next few months, enabling us to possibly ask some new questions.

Are there questions you would ask of these data?Is so, which questions?If not, when would this become useful?