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NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.
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Rubber Hits the Road: How RDF benefits NEMO
Paea LePenduStanford Center for Biomedical Informatics ResearchNational Center for Biomedical Ontology (NCBO)Stanford UniversityFebruary 26, 2010
NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.
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Linked Open Data(http://linkeddata.org/)
BioPortal
NIF
NEMO
NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.
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Web of Knowledge(http://www.iskouk.org/presentations/miles_web_and_skos_200807.pdf)
NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.
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Web of Knowledge(http://www.iskouk.org/presentations/miles_web_and_skos_200807.pdf)
NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.
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Who is Eric Miller?Resource Description Framework (RDF)(http://en.wikipedia.org/wiki/Resource_Description_Framework)
NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.
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Annotation at NCBOResource Index
◦PubMed, PubChem, ClinicalTrials, Gene Expression Omnibus, DrugBank, etc.
Data is a publication or articleResource is a supplier of dataIndex associates data to ontology
terms◦20 resources (going on 100)◦Over 5 BILLION annotations!
NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.
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AnnotationTagged Datasets
◦Search & Retrieval◦Mining:
Co-occurrences Cross-correlations Frequent items
Tag clouds Minimal inference
P100
N100
LOCC
ROCC
NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.
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Deep AnnotationTagged records within datasets
◦Rich semantics◦Detailed queries (SPARQL)
Aggregations
◦Fine-grained analysis
NEMO is novel!
NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.
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NEMO Annotation Task Force(http://nemo.nic.uoregon.edu/wiki/Data_Annotation)
Key Personnel: ◦Haishan Liu, Bob Frank, Jason Sydes◦Gwen Frishkoff & Dejing Dou
Goals (3 phases):◦Prototyping Annotations◦Finessing Annotations and Ontology
Mappings◦Databasing the Annotations (RDF)