+ All Categories
Home > Documents > School of Electrical and Electronic Engineering Nanyang ... · • Dr. Yasir Tahir • Dr. Tomasz...

School of Electrical and Electronic Engineering Nanyang ... · • Dr. Yasir Tahir • Dr. Tomasz...

Date post: 08-Aug-2020
Category:
Upload: others
View: 2 times
Download: 0 times
Share this document with a friend
28
School of Electrical and Electronic Engineering Nanyang Technological University Singapore XU SHIHAO Xu Shihao, ZixuYang, Debsubhra Chakraborty, Yasir Tahir, Tomasz Maszczyk Chua Yi Han Victoria, Justin Dauwels, Daniel Thalmann, Nadia Magnenat Thalmann, Bhing-Leet Tan and Jimmy Lee Chee Keong
Transcript
Page 1: School of Electrical and Electronic Engineering Nanyang ... · • Dr. Yasir Tahir • Dr. Tomasz Maszczyk • Dr. Victoria Chua Yi Han • Dr. Jimmy Lee • Dr. Bhing-Leet Tan •

School of Electrical and Electronic EngineeringNanyang Technological University Singapore

XU SHIHAO

Xu Shihao, ZixuYang, Debsubhra Chakraborty, Yasir Tahir, Tomasz Maszczyk Chua Yi Han Victoria, Justin Dauwels, Daniel Thalmann, NadiaMagnenat Thalmann, Bhing-Leet Tan and Jimmy Lee Chee Keong

Page 2: School of Electrical and Electronic Engineering Nanyang ... · • Dr. Yasir Tahir • Dr. Tomasz Maszczyk • Dr. Victoria Chua Yi Han • Dr. Jimmy Lee • Dr. Bhing-Leet Tan •

Introduction

Design of Experiment

System Overview

Results

Conclusion

2

Page 3: School of Electrical and Electronic Engineering Nanyang ... · • Dr. Yasir Tahir • Dr. Tomasz Maszczyk • Dr. Victoria Chua Yi Han • Dr. Jimmy Lee • Dr. Bhing-Leet Tan •

One in four people suffer from mental illness at some point in their lives1

Nearly two-thirds of them never seek treatment1

Current clinical assessments and treatments require highly trained clinicians

Methods are subjective and time-consuming Can we move towards automated objective assessments?

31. 2001 WHO Press Release on Mental Illness

Page 4: School of Electrical and Electronic Engineering Nanyang ... · • Dr. Yasir Tahir • Dr. Tomasz Maszczyk • Dr. Victoria Chua Yi Han • Dr. Jimmy Lee • Dr. Bhing-Leet Tan •

A chronic, mental disorder

Heterogeneous symptoms1: ➢ Positive symptoms➢ Negative symptoms➢ Cognitive symptoms

Schizophrenia patients display unusual ways of talking or disorganized speech2

Negative symptoms: Reduction of social behavior, such as speech

Negative symptoms contribute to poor function and quality of life for patients3

4

1. Demily, C., & Franck, N. (2008). Cognitive remediation: a promising tool for the treatment of schizophrenia. Expert Review of Neurotherapeutics, 8(7), 1029-1036.

2. DeLisi, L.E., 2001. Speech disorder in schizophrenia: review of the literature and exploration of its relation to the uniquely human capacity for language. Schizophrenia Bulletin, 27(3), pp.481-496..

3. Kirkpatrick, Brian, et al. "The NIMH-MATRICS consensus statement on negative symptoms." Schizophrenia bulletin 32.2 (2006): 214-219.

Page 5: School of Electrical and Electronic Engineering Nanyang ... · • Dr. Yasir Tahir • Dr. Tomasz Maszczyk • Dr. Victoria Chua Yi Han • Dr. Jimmy Lee • Dr. Bhing-Leet Tan •

Current diagnosic methods➢ Physical exam➢ Tests and screenings➢ Psychiatric evaluation (NSA-16)➢ Based on diagnostic criteria

Treatments➢ Lifelong treatment ➢ Hospitalization may be needed➢ Few clinical treatments for negative symptoms

5

Aim:Automatically identify objective cognitive biomarkers: Linguistic/Lexical Features

Page 6: School of Electrical and Electronic Engineering Nanyang ... · • Dr. Yasir Tahir • Dr. Tomasz Maszczyk • Dr. Victoria Chua Yi Han • Dr. Jimmy Lee • Dr. Bhing-Leet Tan •

1. Can the automated objective measurements be used to predict the subjective ratings (NSA-16)?

This would enable automated long-term assessments of negative symptoms

2. Can the automated objective measurements differentiatebetween patients and healthy individuals?

This would enable more objective diagnosis of mental illnesses

6

Page 7: School of Electrical and Electronic Engineering Nanyang ... · • Dr. Yasir Tahir • Dr. Tomasz Maszczyk • Dr. Victoria Chua Yi Han • Dr. Jimmy Lee • Dr. Bhing-Leet Tan •

Introduction

Design of Experiment

System Overview

Results

Conclusion

7

Page 8: School of Electrical and Electronic Engineering Nanyang ... · • Dr. Yasir Tahir • Dr. Tomasz Maszczyk • Dr. Victoria Chua Yi Han • Dr. Jimmy Lee • Dr. Bhing-Leet Tan •

Study in collaboration with Institute of Mental Health in Singapore 2 types of participants

▪ Schizophrenia patients (Patients)(47)

▪ Healthy (Controls) (24)

8

Patients (47)

Controls (24)

AgeMean (years) 30.4 29.8

Range (years) 20-49 19-47

GenderMale 22 10

Female 25 14

Ethnicity

Chinese 39 20

Malay 5 3

Indian 3 1

Education

University 6 4

Diploma/ Vocational 26 14

High School 15 6

Page 9: School of Electrical and Electronic Engineering Nanyang ... · • Dr. Yasir Tahir • Dr. Tomasz Maszczyk • Dr. Victoria Chua Yi Han • Dr. Jimmy Lee • Dr. Bhing-Leet Tan •

Each participant underwent a semi-structured interview Each Interview was conducted by a trained psychologist No pre-determined time-limit for the interview No role-playing during interview On average, interview lasts for 25 minutes Each interview audio is analyzed in its entirety

9

Page 10: School of Electrical and Electronic Engineering Nanyang ... · • Dr. Yasir Tahir • Dr. Tomasz Maszczyk • Dr. Victoria Chua Yi Han • Dr. Jimmy Lee • Dr. Bhing-Leet Tan •

10

• The psychometric scale used is Negative Symptoms Assessment-16 (NSA-16)

• One of few rating instruments specifically designed for negative symptoms

• 16 item scale with scores for speech behaviour, emotional behaviour, affect, movement and daily activity etc.

• Ratings are on a scale of 1-6

Behaviour Score

Fully normal behaviour 1

Behaviour minimally reduced 2

Behaviour mildly reduced, but noticeable by trained rater

3

Behaviour moderately reduced, noticeable even by untrained rater

4

Behaviour is markedly reduced, hampering social function

5

Behaviour severely reduced or absent 6

Page 11: School of Electrical and Electronic Engineering Nanyang ... · • Dr. Yasir Tahir • Dr. Tomasz Maszczyk • Dr. Victoria Chua Yi Han • Dr. Jimmy Lee • Dr. Bhing-Leet Tan •

Introduction

Design of Experiment

System Overview

Results

Conclusion

11

Page 12: School of Electrical and Electronic Engineering Nanyang ... · • Dr. Yasir Tahir • Dr. Tomasz Maszczyk • Dr. Victoria Chua Yi Han • Dr. Jimmy Lee • Dr. Bhing-Leet Tan •

12

Audio RecordingSpeaker Diarization and

Speech recognition Lexical Feature

Extraction

Classification and Prediction

?

Two lapel microphones record the audio of the participant and psychologists

System pipeline

Page 13: School of Electrical and Electronic Engineering Nanyang ... · • Dr. Yasir Tahir • Dr. Tomasz Maszczyk • Dr. Victoria Chua Yi Han • Dr. Jimmy Lee • Dr. Bhing-Leet Tan •

Speaker Diarization (HMM) Segment out the participants’ speech and filter the interferences

13

Page 14: School of Electrical and Electronic Engineering Nanyang ... · • Dr. Yasir Tahir • Dr. Tomasz Maszczyk • Dr. Victoria Chua Yi Han • Dr. Jimmy Lee • Dr. Bhing-Leet Tan •

Speaker Diarization (HMM) Segment out the participants’ speech and filter the interferences

14

Page 15: School of Electrical and Electronic Engineering Nanyang ... · • Dr. Yasir Tahir • Dr. Tomasz Maszczyk • Dr. Victoria Chua Yi Han • Dr. Jimmy Lee • Dr. Bhing-Leet Tan •

Google Cloud Speech API (Cloud Speech-to-Text) Powered by deep learning and NLP Returns text transcription in Real-Time Handles noisy audio Filters inappropriate content

15

Speech APIParticipant

mean STD1 2 3 4 5 6 7 8 9

Google Cloud 0.87 0.79 0.84 0.84 0.66 0.82 0.78 0.83 0.93 0.82 0.07

stream

text

Transcribe accuracy

Page 16: School of Electrical and Electronic Engineering Nanyang ... · • Dr. Yasir Tahir • Dr. Tomasz Maszczyk • Dr. Victoria Chua Yi Han • Dr. Jimmy Lee • Dr. Bhing-Leet Tan •

16

Linguistic Inquiry and Word Count 1 (LIWC2015) Extract number of linguistic words related to thoughts, feelings, personality,

and motivations. 78 output categories in LIWC2015

1. https://liwc.wpengine.com/

Each category we normalized by the duration of the interview

Category name Abbrev Examples Words in category

Common Adverbs adverb very, really, basically 140

Netspeak netspeak coz, thx, yeah 209

Female references female Mom, sister, her, she 124

Feel feel Feel, touch, warm 128

Page 17: School of Electrical and Electronic Engineering Nanyang ... · • Dr. Yasir Tahir • Dr. Tomasz Maszczyk • Dr. Victoria Chua Yi Han • Dr. Jimmy Lee • Dr. Bhing-Leet Tan •

Binary supervised machine learning (Scikit-learn1)

Features: normalized lexical features

Target labels: Healthy vs. Schizophrenic Patient

Leave-one-out cross-validation with feature selection

17

Patient or Healthy?

1. http://scikit-learn.org/stable/

Page 18: School of Electrical and Electronic Engineering Nanyang ... · • Dr. Yasir Tahir • Dr. Tomasz Maszczyk • Dr. Victoria Chua Yi Han • Dr. Jimmy Lee • Dr. Bhing-Leet Tan •

Features: normalized lexical features

Target labels: Unobservable vs. Observable

➢ Unobservable: NSA score 1-2

➢ Observable: NSA score 3-6

Leave-one-out cross-validation with feature selection

18

NSA-16 indices

Page 19: School of Electrical and Electronic Engineering Nanyang ... · • Dr. Yasir Tahir • Dr. Tomasz Maszczyk • Dr. Victoria Chua Yi Han • Dr. Jimmy Lee • Dr. Bhing-Leet Tan •

Introduction & Literature Review

Design of Experiment

System Overview

Results

Discussion & Conclusion

19

Page 20: School of Electrical and Electronic Engineering Nanyang ... · • Dr. Yasir Tahir • Dr. Tomasz Maszczyk • Dr. Victoria Chua Yi Han • Dr. Jimmy Lee • Dr. Bhing-Leet Tan •

20

Confusion Matrix

Precision Recall F-score AUC Accuracy Baseline ClassifierFeature

evaluatorPredicted class

Patient Healthy

True class

Patient 41 6 0.89 0.87 0.88 0.8384.5% 66.2%

Logistic Regression

Logistic RegressionHealthy 5 19 0.76 0.79 0.78 0.83

True class

Patient 40 7 0.91 0.85 0.88 0.8284.5% 66.2% SVM SVM

Healthy 4 20 0.74 0.83 0.78 0.82

True class

Patient 40 7 0.89 0.85 0.87 0.8183.1% 66.2%

Logistic Regression

SVMHealthy 5 19 0.73 0.79 0.76 0.81

Classification Metrics ( 47 Patients v/s 24 healthy controls)

Automated objective measurements (lexical features) differentiate between patients and healthy individuals

Page 21: School of Electrical and Electronic Engineering Nanyang ... · • Dr. Yasir Tahir • Dr. Tomasz Maszczyk • Dr. Victoria Chua Yi Han • Dr. Jimmy Lee • Dr. Bhing-Leet Tan •

21

Correlation matrix between NSA-16 scores and Lexical features

NSA items

Confusion Matrix

AUC Accuracy Baseline ClassifierFeature

EvaluatorPredicted class

low high

NSA2: Restricted Speech Quantity

True class

low 24 5 0.7778.7% 61.7% Decision tree

Logistic Regressionhigh 5 13 0.77

NSA6: Reduced modulation of

intensity

True class

low 22 3 0.7168.1% 53.2%

K-NeighborsClassifier

Gradient Boostinghigh 12 10 0.71

NSA items can be predicted by Lexical features

NSA

Scores

words / min

Page 22: School of Electrical and Electronic Engineering Nanyang ... · • Dr. Yasir Tahir • Dr. Tomasz Maszczyk • Dr. Victoria Chua Yi Han • Dr. Jimmy Lee • Dr. Bhing-Leet Tan •

22

Kruskal–Wallis Test (p-value < 0.01)

Words patients used less Words patients used more

Category example P-value Category example P-value

Informal netspeak, swear words 0.0029 Female lady, sister, mom 0.0024

Netspeak coz, thx, lol 0.0046 Feel hate, kill, annoyed 0.0602

Assent agree, ok, yes 0.0056 Family mom, father, wife 0.0935

Adverbs very, really, quickly 0.009

Page 23: School of Electrical and Electronic Engineering Nanyang ... · • Dr. Yasir Tahir • Dr. Tomasz Maszczyk • Dr. Victoria Chua Yi Han • Dr. Jimmy Lee • Dr. Bhing-Leet Tan •

23

‘Female’ words (per min) ‘Male’ words (per min)

Patient

Mean STD

Patient

Mean STD

Female 0.39 0.37 Female 0.22 0.14

Male 0.17 0.11 Male 0.15 0.08

Healthy

Mean STD

Healthy

Mean STD

Female 0.1 0.13 Female 0.22 0.32

Male 0.16 0.16 Male 0.21 0.1

Female patients used more female words during interview

Patients may have greater access and higher proximity to a social support network of female caretakers

(Patients vs. Healthy), (Female vs. Male), (Female words vs. Male words)

Page 24: School of Electrical and Electronic Engineering Nanyang ... · • Dr. Yasir Tahir • Dr. Tomasz Maszczyk • Dr. Victoria Chua Yi Han • Dr. Jimmy Lee • Dr. Bhing-Leet Tan •

24

Pearson correlation test

Patients used more ‘feeling’ words related to themselves

Verified that due to impairment in social cognition, schizophrenic patients tend to focus on themselves more

feeling & I feeling & family

Correlation p-value Correlation p-value

Patients 0.648 8.66E-07 0.287 0.05

Healthy 0.5 0.0129 0.026 0.905

Page 25: School of Electrical and Electronic Engineering Nanyang ... · • Dr. Yasir Tahir • Dr. Tomasz Maszczyk • Dr. Victoria Chua Yi Han • Dr. Jimmy Lee • Dr. Bhing-Leet Tan •

Introduction & Literature Review

Design of Experiment

System Overview

Results

Conclusion

25

Page 26: School of Electrical and Electronic Engineering Nanyang ... · • Dr. Yasir Tahir • Dr. Tomasz Maszczyk • Dr. Victoria Chua Yi Han • Dr. Jimmy Lee • Dr. Bhing-Leet Tan •

Objective Lexical features can be utilized to detect the differences of behavior of schizophrenic patients

Increase our dataset Apply more advanced Natural Language Processing method

We have just started a similar study related to depression

26

Mental Illness

•Schizophrenia

•Depression

Symptoms

•Negative symptoms

•Neurocognitive impairments

•Social cognitive deficits

Objective cues

•Speech

•Motor

•Facial expressions

Page 27: School of Electrical and Electronic Engineering Nanyang ... · • Dr. Yasir Tahir • Dr. Tomasz Maszczyk • Dr. Victoria Chua Yi Han • Dr. Jimmy Lee • Dr. Bhing-Leet Tan •

• Xu Shihao• Debsubhra Chakraborty• Dr. Yasir Tahir• Dr. Tomasz Maszczyk• Dr. Victoria Chua Yi Han

• Dr. Jimmy Lee• Dr. Bhing-Leet Tan• Dr. Zixu Yang

▪ External Collaborators (Institute of Mental Health, Singapore)

27

▪ Lab Members

▪ NTU Collaborators (IMI)• Prof. Nadia Magnenat-Thalmann• Prof. Daniel Thalmann

▪ Supervisor: Justin Dauwels

Page 28: School of Electrical and Electronic Engineering Nanyang ... · • Dr. Yasir Tahir • Dr. Tomasz Maszczyk • Dr. Victoria Chua Yi Han • Dr. Jimmy Lee • Dr. Bhing-Leet Tan •

Supervisor: Justin DauwelsSchool of Electrical and Electronic EngineeringNanyang Technological University Singapore

XU SHIHAO


Recommended