Table S5. Transposon integration sites identified in SB …...2009/10/01 · Tumor ID Mouse ID...

Tumor ID Mouse ID Strain Gene symbol LocationDistance Chr Address Freq Dir

15081-HCC 15081 TG12775 Rian intron 2 not disrupt CDS chr12 110,852,958 20 inv

15081-HCC 15081 TG12775 N/D N/D N/D chr12 37,703,740 10 N/D

15081-HCC 15081 TG12775 Pigh 3 prime 19.138 kb chr12 80,171,519 5 inv

15081-HCC 15081 TG12775 Prkch intron 2 disrupt CDS chr12 74,763,508 4 inv

15081-HCC 15081 TG12775 Rasal2 intron 1 disrupt CDS chr1 159,264,087 3 inv


15081-HCC 15081 TG12775 Mdga2 intron 2 disrupt CDS chr12 67,929,714 3 same

15081-HCC 15081 TG12775 Rdh11 5 prime 1.405 kb chr12 80,294,211 3 same


15081-HCC 15081 TG12775 Rabgap1l intron 13 disrupt CDS chr1 162,410,260 2 inv

15081-HCC 15081 TG12775 Ddx50 exon 6 disrupt CDS chr10 62,103,218 2 inv



15081-HCC 15081 TG12775 Pttg1 3 prime 81.565 kb chr11 43,157,918 2 inv

15081-HCC 15081 TG12775 Alkbh1 3 prime 16.856 kb chr12 88,767,933 2 inv

15081-HCC 15081 TG12775 Arg2 intron 2 disrupt CDS chr12 80,238,218 2 inv

15081-HCC 15081 TG12775 Max 5 prime 42.119 kb chr12 78,105,291 2 inv

15081-HCC 15081 TG12775 Pigh 5 prime 15.967 kb chr12 80,206,624 2 same

15081-HCC 15081 TG12775 Spnb1 intron 1 not disrupt CDS chr12 77,800,018 2 same

15081-HCC 15081 TG12775 Synj2bp intron 1 disrupt CDS chr12 82,618,448 2 inv

15081-HCC 15081 TG12775 Nxnl2 3 prime 19.887 kb chr13 51,290,443 2 same

15081-HCC 15081 TG12775 Zmiz1 intron 2 not disrupt CDS chr14 26,326,043 2 inv

15081-HCC 15081 TG12775 Tmem117 intron 6 disrupt CDS chr15 94,855,198 2 same

15081-HCC 15081 TG12775 Baz2b intron 2 not disrupt CDS chr2 59,890,703 2 same


15081-HCC 15081 TG12775 Galt 3 prime 2.940 kb chr4 41,708,938 2 inv

15081-HCC 15081 TG12775 Rpl11 3 prime 6.029 kb chr4 135,603,257 2 same

15081-HCC 15081 TG12775 En2 intron 1 disrupt CDS chr5 28,496,413 2 same

15081-HCC 15081 TG12775 Gna12 intron 1 disrupt CDS chr5 141,295,077 2 same

15081-HCC 15081 TG12775 Zfp157 intron 3 disrupt CDS chr5 138,893,880 2 same

15081-HCC 15081 TG12775 Pde3a intron 1 disrupt CDS chr6 141,326,223 2 same

15081-HCC 15081 TG12775 Zfp800 3 prime 36.617 kb chr6 28,174,984 2 same

15081-HCC 15081 TG12775 Mrgprg 3 prime 4.680 kb chr7 150,948,218 2 same

15081-HCC 15081 TG12775 Cntnap4 intron 1 disrupt CDS chr8 115,111,027 2 inv


15081-HCC 15081 TG12775 Cops7b 3 prime 16.239 kb chr1 88,519,314 1 inv

15081-HCC 15081 TG12775 OTTMUSG00000020946intron 1 disrupt CDS chr1 18,250,786 1 inv

15081-HCC 15081 TG12775 Rfwd2 intron 19 disrupt CDS chr1 161,273,246 1 inv

15081-HCC 15081 TG12775 Sash1 5 prime 13.540 kb chr10 8,619,408 1 inv

15081-HCC 15081 TG12775 Sycp3 intron 4 disrupt CDS chr10 87,929,139 1 same

15081-HCC 15081 TG12775 Morc2a intron 4 disrupt CDS chr11 3,569,055 1 same

15081-HCC 15081 TG12775 Sap30bp intron 3 disrupt CDS chr11 115,809,057 1 same

15081-HCC 15081 TG12775 Srr exon 9 not disrupt CDS chr11 74,720,779 1 same

Table S5. Transposon integration sites identified in SB-induced hepatocellular carcinoma.

page 1


15081-HCC 15081 TG12775 4921509E07Rik intron 6 disrupt CDS chr12 79,821,692 1 inv

15081-HCC 15081 TG12775 6330442E10Rik 5 prime 7.616 kb chr12 80,115,880 1 inv

15081-HCC 15081 TG12775 6330442E10Rik 5 prime 17.085 kb chr12 80,125,349 1 same

15081-HCC 15081 TG12775 Actn1 intron 1 disrupt CDS chr12 81,353,458 1 inv




15081-HCC 15081 TG12775 Dync1h1 intron 71 disrupt CDS chr12 111,901,717 1 same

15081-HCC 15081 TG12775 Eif2s1 intron 4 disrupt CDS chr12 79,978,546 1 same

15081-HCC 15081 TG12775 Etv1 5 prime 99.677 kb chr12 39,495,113 1 same

15081-HCC 15081 TG12775 Flrt2 intron 1 not disrupt CDS chr12 96,966,272 1 inv

15081-HCC 15081 TG12775 Foxn3 intron 1 not disrupt CDS chr12 100,656,549 1 same

15081-HCC 15081 TG12775 Fut8 intron 6 disrupt CDS chr12 78,480,347 1 inv

15081-HCC 15081 TG12775 Garnl1 intron 13 disrupt CDS chr12 56,847,877 1 inv

15081-HCC 15081 TG12775 Jundm2 5 prime 42.720 kb chr12 86,938,108 1 same

15081-HCC 15081 TG12775 Kcnk10 intron 1 disrupt CDS chr12 99,767,302 1 inv







15081-HCC 15081 TG12775 Npas3 intron 4 disrupt CDS chr12 54,876,208 1 inv

15081-HCC 15081 TG12775 Pigh 5 prime 12.832 kb chr12 80,203,489 1 inv

15081-HCC 15081 TG12775 Pnma1 5 prime 21.543 kb chr12 85,510,982 1 same

15081-HCC 15081 TG12775 Rab15 5 prime 10.763 kb chr12 77,934,266 1 same

15081-HCC 15081 TG12775 Rcor1 intron 2 disrupt CDS chr12 112,289,931 1 same

15081-HCC 15081 TG12775 Sel1l intron 3 disrupt CDS chr12 93,074,205 1 inv

15081-HCC 15081 TG12775 Sipa1l1 intron 1 not disrupt CDS chr12 83,386,128 1 inv

15081-HCC 15081 TG12775 Vti1b intron 1 disrupt CDS chr12 80,269,154 1 inv

15081-HCC 15081 TG12775 Vti1b 5 prime 2.346 kb chr12 80,275,710 1 same

15081-HCC 15081 TG12775 6430502M16Rik 3 prime 9.005 kb chr13 93,219,185 1 same

15081-HCC 15081 TG12775 Iqgap2 intron 2 disrupt CDS chr13 96,595,272 1 same

15081-HCC 15081 TG12775 Isl1 3 prime 42.244 kb chr13 117,057,649 1 inv

15081-HCC 15081 TG12775 2610028A01Rik intron 6 disrupt CDS chr14 64,532,655 1 same

15081-HCC 15081 TG12775 Fut11 intron 2 disrupt CDS chr14 21,516,412 1 inv

15081-HCC 15081 TG12775 Fmnl3 intron 1 disrupt CDS chr15 99,172,507 1 same




15081-HCC 15081 TG12775 Zfat1 intron 2 disrupt CDS chr15 68,051,773 1 same

15081-HCC 15081 TG12775 Eif4g1 intron 6 disrupt CDS chr16 20,676,203 1 inv



page 2


15081-HCC 15081 TG12775 Saps3 intron 1 not disrupt CDS chr19 3,574,380 1 same

15081-HCC 15081 TG12775 Fmnl2 intron 1 disrupt CDS chr2 52,742,648 1 same

15081-HCC 15081 TG12775 Rc3h2 intron 5 disrupt CDS chr2 37,264,710 1 inv

15081-HCC 15081 TG12775 Scn7a intron 15 disrupt CDS chr2 66,533,056 1 inv

15081-HCC 15081 TG12775 Gnai3 intron 1 disrupt CDS chr3 107,932,333 1 inv



15081-HCC 15081 TG12775 Impad1 intron 2 disrupt CDS chr4 4,705,007 1 same

15081-HCC 15081 TG12775 Aff1 intron 18 disrupt CDS chr5 104,278,333 1 same

15081-HCC 15081 TG12775 En2 intron 1 disrupt CDS chr5 28,496,495 1 inv


15081-HCC 15081 TG12775 Cnbp intron 1 not disrupt CDS chr6 87,796,699 1 same


15081-HCC 15081 TG12775 Acan exon 12 disrupt CDS chr7 86,245,541 1 same


15081-HCC 15081 TG12775 Olfr488 5 prime 0.926 kb chr7 115,400,576 1 same

15081-HCC 15081 TG12775 Spon1 intron 3 disrupt CDS chr7 120,996,631 1 same

15081-HCC 15081 TG12775 4933402J07Rik 3 prime 56.742 kb chr8 90,169,838 1 inv


15081-HCC 15081 TG12775 Wrn intron 1 not disrupt CDS chr8 34,472,809 1 inv

15081-HCC 15081 TG12775 Adam10 intron 1 disrupt CDS chr9 70,534,584 1 same

15081-HCC 15081 TG12775 Myo5a intron 21 disrupt CDS chr9 75,021,683 1 same

15081-HCC 15081 TG12775 Nrg4 5 prime 18.029 kb chr9 55,149,461 1 inv

15081-HCC 15081 TG12775 Stag1 intron 8 disrupt CDS chr9 100,703,121 1 inv

15081-HCC 15081 TG12775 Tpm1 intron 2 disrupt CDS chr9 66,887,255 1 inv

15081-HCC 15081 TG12775 Ubqln2 5 prime 24.166 kb chrX 149,911,935 1 inv

15082-HCC-L 15082 TG12775 Pnma1 5 prime 31.380 kb chr12 85,520,819 58 same

15082-HCC-L 15082 TG12775 Arf6 3 prime 60.423 kb chr12 70,537,390 36 same

15082-HCC-L 15082 TG12775 Rian intron 2 not disrupt CDS chr12 110,851,655 28 same

15082-HCC-L 15082 TG12775 Plek2 intron 1 disrupt CDS chr12 80,004,894 20 inv

15082-HCC-L 15082 TG12775 4921509E07Rik 3 prime 11.260 kb chr12 79,846,759 16 same

15082-HCC-L 15082 TG12775 Atxn7l1 intron 6 disrupt CDS chr12 34,047,643 9 inv

15082-HCC-L 15082 TG12775 Nrxn3 intron 4 disrupt CDS chr12 90,471,245 6 same

15082-HCC-L 15082 TG12775 Ociad2 5 prime 10.700 kb chr5 73,740,578 6 inv

15082-HCC-L 15082 TG12775 6330442E10Rik 5 prime 3.024 kb chr12 80,111,288 5 same

15082-HCC-L 15082 TG12775 Pigh 5 prime 21.809 kb chr12 80,212,466 5 inv

15082-HCC-L 15082 TG12775 Elmo1 intron 3 disrupt CDS chr13 20,664,770 5 same

15082-HCC-L 15082 TG12775 Rbm7 3 prime 7.329 kb chr9 48,296,081 5 same

15082-HCC-L 15082 TG12775 N/D N/D N/D chr10 81,685,486 4 N/D

15082-HCC-L 15082 TG12775 Plek2 intron 1 disrupt CDS chr12 80,006,059 4 same

15082-HCC-L 15082 TG12775 Tcea1 intron 2 disrupt CDS chr1 4,861,799 3 inv

15082-HCC-L 15082 TG12775 Prps1l1 5 prime 31.968 kb chr12 35,639,140 3 inv

15082-HCC-L 15082 TG12775 Rcor1 3 prime 0.480 kb chr12 112,352,077 3 same

15082-HCC-L 15082 TG12775 Sptlc2 5 prime 5.645 kb chr12 88,734,825 3 same

page 3




15082-HCC-L 15082 TG12775 Erbb4 intron 1 disrupt CDS chr1 68,925,158 2 same

15082-HCC-L 15082 TG12775 Btg1 3 prime 55.864 kb chr10 96,138,125 2 same




15082-HCC-L 15082 TG12775 Sash1 intron 8 disrupt CDS chr10 8,481,440 2 same

15082-HCC-L 15082 TG12775 Daam1 intron 15 disrupt CDS chr12 73,056,975 2 inv

15082-HCC-L 15082 TG12775 Esrrb intron 1 not disrupt CDS chr12 87,789,357 2 same

15082-HCC-L 15082 TG12775 Fut8 intron 10 disrupt CDS chr12 78,555,683 2 same

15082-HCC-L 15082 TG12775 Mnat1 intron 7 disrupt CDS chr12 74,347,662 2 inv






15082-HCC-L 15082 TG12775 Pygl 3 prime 56.517 kb chr12 71,272,087 2 inv

15082-HCC-L 15082 TG12775 Rdh11 5 prime 13.539 kb chr12 80,306,345 2 same

15082-HCC-L 15082 TG12775 Rian intron 3 not disrupt CDS chr12 110,865,906 2 inv

15082-HCC-L 15082 TG12775 Sec23a 3 prime 117.287 kb chr12 59,995,717 2 inv

15082-HCC-L 15082 TG12775 Zc3h14 intron 9 disrupt CDS chr12 100,007,633 2 inv

15082-HCC-L 15082 TG12775 Dip2c intron 19 disrupt CDS chr13 9,597,686 2 inv

15082-HCC-L 15082 TG12775 Gmds intron 8 disrupt CDS chr13 32,026,660 2 inv

15082-HCC-L 15082 TG12775 Col14a1 intron 8 disrupt CDS chr15 55,199,237 2 inv

15082-HCC-L 15082 TG12775 Eif3h 3 prime 109.830 kb chr15 51,587,177 2 inv

15082-HCC-L 15082 TG12775 A2bp1 intron 8 disrupt CDS chr16 7,341,884 2 inv

15082-HCC-L 15082 TG12775 Prkce intron 10 disrupt CDS chr17 86,940,438 2 same


15082-HCC-L 15082 TG12775 Wac intron 3 disrupt CDS chr18 7,879,195 2 same

15082-HCC-L 15082 TG12775 Kynu intron 8 disrupt CDS chr2 43,479,188 2 inv

15082-HCC-L 15082 TG12775 Lef1 5 prime 164.578 kb chr3 130,761,671 2 same


15082-HCC-L 15082 TG12775 Wwtr1 intron 2 disrupt CDS chr3 57,344,262 2 inv

15082-HCC-L 15082 TG12775 2010209O12Rik exon 2 disrupt CDS chr5 24,094,921 2 same

15082-HCC-L 15082 TG12775 En2 intron 1 disrupt CDS chr5 28,496,493 2 same

15082-HCC-L 15082 TG12775 Asns 5 prime 85.064 kb chr6 7,728,246 2 inv

15082-HCC-L 15082 TG12775 Glrx3 3 prime 27.599 kb chr7 144,687,876 2 inv



15082-HCC-L 15082 TG12775 Dst intron 1 disrupt CDS chr1 34,083,847 1 same


15082-HCC-L 15082 TG12775 1700017N19Rik intron 1 not disrupt CDS chr10 100,056,132 1 same

15082-HCC-L 15082 TG12775 Man1a 5 prime 41.110 kb chr10 53,836,712 1 same

page 4


15082-HCC-L 15082 TG12775 Map3k7ip2 5 prime 3.971 kb chr10 7,648,631 1 inv


15082-HCC-L 15082 TG12775 Ncoa7 intron 4 disrupt CDS chr10 30,422,660 1 same

15082-HCC-L 15082 TG12775 Rassf3 intron 1 disrupt CDS chr10 120,890,078 1 same

15082-HCC-L 15082 TG12775 Rps12 3 prime 71.432 kb chr10 23,435,574 1 inv

15082-HCC-L 15082 TG12775 Sult3a1 5 prime 95.447 kb chr10 33,503,877 1 same

15082-HCC-L 15082 TG12775 Trhde intron 15 disrupt CDS chr10 113,880,916 1 inv

15082-HCC-L 15082 TG12775 3300001P08Rik 3 prime 34.128 kb chr11 94,149,097 1 same

15082-HCC-L 15082 TG12775 Acly intron 19 disrupt CDS chr11 100,346,861 1 same

15082-HCC-L 15082 TG12775 Ahsa2 3 prime 14.911 kb chr11 23,383,035 1 inv

15082-HCC-L 15082 TG12775 C230094A16Rik 5 prime 17.931 kb chr11 29,943,964 1 same

15082-HCC-L 15082 TG12775 Spred2 5 prime 189.564 kb chr11 19,733,036 1 inv

15082-HCC-L 15082 TG12775 4921509E07Rik 3 prime 12.844 kb chr12 79,848,343 1 inv

15082-HCC-L 15082 TG12775 8430415E04Rik intron 23 disrupt CDS chr12 104,847,168 1 inv

15082-HCC-L 15082 TG12775 A530016O06Rik intron 3 disrupt CDS chr12 38,049,946 1 inv

15082-HCC-L 15082 TG12775 A530016O06Rik 3 prime 29.285 kb chr12 38,337,804 1 same

15082-HCC-L 15082 TG12775 Adck1 intron 4 disrupt CDS chr12 89,657,314 1 inv

15082-HCC-L 15082 TG12775 Atp6v1d intron 2 disrupt CDS chr12 79,957,025 1 inv

15082-HCC-L 15082 TG12775 Atxn3 5 prime 8.072 kb chr12 103,204,464 1 same

15082-HCC-L 15082 TG12775 Ccnk intron 11 disrupt CDS chr12 109,440,179 1 same

15082-HCC-L 15082 TG12775 D12Ertd551e 3 prime 8.339 kb chr12 117,619,910 1 same

15082-HCC-L 15082 TG12775 Eml5 intron 32 disrupt CDS chr12 100,046,462 1 inv

15082-HCC-L 15082 TG12775 Fbln5 5 prime 47.464 kb chr12 103,104,729 1 same

15082-HCC-L 15082 TG12775 Flvcr2 intron 9 disrupt CDS chr12 87,146,456 1 same

15082-HCC-L 15082 TG12775 Fut8 intron 2 not disrupt CDS chr12 78,390,388 1 same

15082-HCC-L 15082 TG12775 Gphn intron 12 disrupt CDS chr12 79,699,114 1 inv

15082-HCC-L 15082 TG12775 Gpr33 5 prime 17.437 kb chr12 53,146,487 1 same

15082-HCC-L 15082 TG12775 Mnat1 intron 7 disrupt CDS chr12 74,347,646 1 inv







15082-HCC-L 15082 TG12775 Nin 5 prime 36.119 kb chr12 71,249,031 1 inv

15082-HCC-L 15082 TG12775 Nrcam 3 prime 59.743 kb chr12 45,759,571 1 same

15082-HCC-L 15082 TG12775 Nrxn3 intron 18 disrupt CDS chr12 91,487,799 1 inv

15082-HCC-L 15082 TG12775 Pigh exon 4 not disrupt CDS chr12 80,182,962 1 inv

15082-HCC-L 15082 TG12775 Plek2 intron 1 disrupt CDS chr12 80,001,502 1 inv

15082-HCC-L 15082 TG12775 Pnma1 5 prime 31.386 kb chr12 85,520,825 1 same

15082-HCC-L 15082 TG12775 Scfd1 intron 10 disrupt CDS chr12 52,507,176 1 inv

15082-HCC-L 15082 TG12775 Sptlc2 intron 1 disrupt CDS chr12 88,711,932 1 same

15082-HCC-L 15082 TG12775 Zbtb1 3 prime 5.099 kb chr12 77,494,536 1 same

15082-HCC-L 15082 TG12775 Elmo1 intron 1 not disrupt CDS chr13 20,642,543 1 inv

page 5


15082-HCC-L 15082 TG12775 Hcn1 intron 1 disrupt CDS chr13 118,419,374 1 inv


15082-HCC-L 15082 TG12775 Nnt intron 14 disrupt CDS chr13 120,138,701 1 inv

15082-HCC-L 15082 TG12775 V1rh16 3 prime 13.460 kb chr13 23,311,450 1 same

15082-HCC-L 15082 TG12775 Ints6 intron 3 disrupt CDS chr14 63,374,592 1 same

15082-HCC-L 15082 TG12775 Myst4 intron 2 disrupt CDS chr14 22,376,113 1 same



15082-HCC-L 15082 TG12775 Trim52 5 prime 8.941 kb chr14 106,499,556 1 inv


15082-HCC-L 15082 TG12775 Prlr 5 prime 219.664 kb chr15 10,039,468 1 same

15082-HCC-L 15082 TG12775 A2bp1 intron 3 not disrupt CDS chr16 6,548,205 1 inv

15082-HCC-L 15082 TG12775 Dscam intron 3 disrupt CDS chr16 97,174,652 1 same

15082-HCC-L 15082 TG12775 Heg1 intron 2 disrupt CDS chr16 33,719,474 1 inv

15082-HCC-L 15082 TG12775 Klhl24 intron 6 disrupt CDS chr16 20,118,161 1 inv

15082-HCC-L 15082 TG12775 Map3k13 5 prime 46.770 kb chr16 21,885,180 1 inv


15082-HCC-L 15082 TG12775 Lpin2 intron 2 disrupt CDS chr17 71,569,625 1 same

15082-HCC-L 15082 TG12775 Crem intron 6 disrupt CDS chr18 3,276,897 1 same

15082-HCC-L 15082 TG12775 Dok6 intron 3 disrupt CDS chr18 89,729,064 1 same

15082-HCC-L 15082 TG12775 Gata6 3 prime 38.728 kb chr18 11,124,361 1 inv

15082-HCC-L 15082 TG12775 Myot 5 prime 35.521 kb chr18 44,479,855 1 inv

15082-HCC-L 15082 TG12775 Spry4 intron 1 not disrupt CDS chr18 38,758,912 1 same

15082-HCC-L 15082 TG12775 Txndc10 3 prime 35.570 kb chr18 90,748,229 1 same

15082-HCC-L 15082 TG12775 Wdr33 intron 15 disrupt CDS chr18 32,050,628 1 inv



15082-HCC-L 15082 TG12775 Pip5k1b intron 1 not disrupt CDS chr19 24,541,018 1 same

15082-HCC-L 15082 TG12775 Pnlip 5 prime 12.969 kb chr19 58,743,309 1 inv

15082-HCC-L 15082 TG12775 Prlhr 5 prime 23.354 kb chr19 60,567,561 1 inv

15082-HCC-L 15082 TG12775 Vti1a intron 3 disrupt CDS chr19 55,405,594 1 inv

15082-HCC-L 15082 TG12775 Bfsp1 5 prime 31.058 kb chr2 143,719,967 1 same

15082-HCC-L 15082 TG12775 Ebf4 intron 6 disrupt CDS chr2 130,145,199 1 same

15082-HCC-L 15082 TG12775 Macrod2 intron 8 disrupt CDS chr2 141,661,836 1 same


15082-HCC-L 15082 TG12775 Tlk1 intron 2 disrupt CDS chr2 70,608,883 1 same

15082-HCC-L 15082 TG12775 D930015E06Rik intron 20 disrupt CDS chr3 83,731,923 1 inv

15082-HCC-L 15082 TG12775 Lmo4 intron 2 disrupt CDS chr3 143,862,560 1 same





15082-HCC-L 15082 TG12775 2310030N02Rik 5 prime 1.172 kb chr4 11,004,523 1 inv

15082-HCC-L 15082 TG12775 Faf1 intron 8 disrupt CDS chr4 109,469,682 1 inv

page 6



15082-HCC-L 15082 TG12775 Rusc2 intron 1 not disrupt CDS chr4 43,405,247 1 same

15082-HCC-L 15082 TG12775 Tmem57 intron 6 disrupt CDS chr4 134,375,079 1 inv

15082-HCC-L 15082 TG12775 Coro1c intron 2 disrupt CDS chr5 114,317,210 1 same

15082-HCC-L 15082 TG12775 Gnai1 5 prime 12.954 kb chr5 17,879,185 1 inv


15082-HCC-L 15082 TG12775 Ubc 5 prime 10.096 kb chr5 125,880,483 1 inv

15082-HCC-L 15082 TG12775 Dgki intron 29 disrupt CDS chr6 36,831,767 1 same

15082-HCC-L 15082 TG12775 Suclg1 intron 3 disrupt CDS chr6 73,212,774 1 same

15082-HCC-L 15082 TG12775 Lsm14a intron 1 disrupt CDS chr7 35,160,898 1 same


15082-HCC-L 15082 TG12775 Cdh13 intron 1 disrupt CDS chr8 120,902,184 1 same

15082-HCC-L 15082 TG12775 Itgb1 5 prime 86.176 kb chr8 131,170,921 1 inv


15082-HCC-L 15082 TG12775 Psd3 intron 1 disrupt CDS chr8 70,492,568 1 same

15082-HCC-L 15082 TG12775 BC038479 intron 9 disrupt CDS chr9 26,580,277 1 inv

15082-HCC-L 15082 TG12775 Cpne4 5 prime 524.650 kb chr9 104,412,224 1 same





15082-HCC-L 15082 TG12775 Nptn 3 prime 14.349 kb chr9 58,515,035 1 inv

15082-HCC-L 15082 TG12775 Rasa2 intron 9 disrupt CDS chr9 96,474,800 1 inv

15082-HCC-L 15082 TG12775 Diap2 3 prime 84.857 kb chrX 126,948,250 1 same

15082-HCC-M 15082 TG12775 5730403B10Rik 5 prime 58.471 kb chr16 4,848,406 4 same

15082-HCC-M 15082 TG12775 N/D N/D N/D chr1 80,647,831 3 N/D

15082-HCC-M 15082 TG12775 Fut8 3 prime 59.382 kb chr12 78,636,356 3 same

15082-HCC-M 15082 TG12775 Prkcm intron 1 disrupt CDS chr12 51,702,579 3 same

15082-HCC-M 15082 TG12775 Fchsd2 intron 8 disrupt CDS chr7 108,349,369 3 inv

15082-HCC-M 15082 TG12775 4933426M11Rik intron 2 disrupt CDS chr12 81,957,779 2 same

15082-HCC-M 15082 TG12775 Eif2s1 intron 1 not disrupt CDS chr12 79,967,197 2 same

15082-HCC-M 15082 TG12775 Gphn 5 prime 476.773 kb chr12 79,308,952 2 inv



15082-HCC-M 15082 TG12775 Prkcm 5 prime 26.573 kb chr12 51,776,783 2 inv

15082-HCC-M 15082 TG12775 Rad51l1 intron 7 disrupt CDS chr12 80,475,613 2 inv

15082-HCC-M 15082 TG12775 Ngly1 3 prime 26.212 kb chr14 17,170,652 2 inv

15082-HCC-M 15082 TG12775 Atp5a1 intron 2 disrupt CDS chr18 78,015,122 2 same

15082-HCC-M 15082 TG12775 Smc5 intron 18 disrupt CDS chr19 23,290,139 2 inv

15082-HCC-M 15082 TG12775 Mapkap1 intron 3 disrupt CDS chr2 34,308,431 2 same

15082-HCC-M 15082 TG12775 Rapgef4 intron 28 disrupt CDS chr2 72,083,922 2 same



15082-HCC-M 15082 TG12775 A830006F12Rik 3 prime 44.183 kb chr1 70,976,154 1 same

page 7


15082-HCC-M 15082 TG12775 Dusp10 3 prime 38.893 kb chr1 185,938,408 1 inv

15082-HCC-M 15082 TG12775 Ikzf2 intron 3 disrupt CDS chr1 69,636,062 1 same




15082-HCC-M 15082 TG12775 Foxo3a intron 2 disrupt CDS chr10 41,982,774 1 inv



15082-HCC-M 15082 TG12775 Ppp1r14c 5 prime 8.857 kb chr10 6,989,248 1 same

15082-HCC-M 15082 TG12775 Taf15 intron 9 disrupt CDS chr11 83,312,458 1 inv

15082-HCC-M 15082 TG12775 6330442E10Rik 5 prime 21.508 kb chr12 80,129,772 1 inv

15082-HCC-M 15082 TG12775 6530401N04Rik intron 2 disrupt CDS chr12 53,101,834 1 same

15082-HCC-M 15082 TG12775 Arg2 intron 2 disrupt CDS chr12 80,243,636 1 inv

15082-HCC-M 15082 TG12775 AW125753 3 prime 11.418 kb chr12 14,147,426 1 same

15082-HCC-M 15082 TG12775 D12Ertd551e 3 prime 1.608 kb chr12 117,613,179 1 same

15082-HCC-M 15082 TG12775 Dock4 intron 1 disrupt CDS chr12 41,213,450 1 inv

15082-HCC-M 15082 TG12775 Exdl2 intron 1 not disrupt CDS chr12 81,568,781 1 inv

15082-HCC-M 15082 TG12775 Hif1a 3 prime 1.079 kb chr12 75,048,957 1 inv

15082-HCC-M 15082 TG12775 Iah1 intron 5 disrupt CDS chr12 21,327,762 1 same

15082-HCC-M 15082 TG12775 Mark3 intron 13 disrupt CDS chr12 112,876,978 1 inv

15082-HCC-M 15082 TG12775 Mpp5 intron 1 not disrupt CDS chr12 79,879,293 1 same





15082-HCC-M 15082 TG12775 Ppp2r5c 5 prime 166.450 kb chr12 111,643,450 1 inv

15082-HCC-M 15082 TG12775 Rad51l1 intron 8 disrupt CDS chr12 80,809,234 1 inv

15082-HCC-M 15082 TG12775 Rapgef5 5 prime 312.314 kb chr12 118,682,804 1 same

15082-HCC-M 15082 TG12775 Rapgef5 3 prime 3.208 kb chr12 118,998,326 1 same

15082-HCC-M 15082 TG12775 Rcor1 3 prime 0.480 kb chr12 112,352,077 1 same

15082-HCC-M 15082 TG12775 Rian intron 10 not disrupt CDS chr12 110,882,920 1 same

15082-HCC-M 15082 TG12775 Serpina3k 5 prime 43.025 kb chr12 105,540,924 1 inv

15082-HCC-M 15082 TG12775 Snx6 5 prime 10.686 kb chr12 55,907,335 1 same

15082-HCC-M 15082 TG12775 Stxbp6 intron 2 disrupt CDS chr12 46,075,193 1 same

15082-HCC-M 15082 TG12775 Vrk1 5 prime 76.046 kb chr12 107,239,574 1 same

15082-HCC-M 15082 TG12775 Vti1b intron 2 disrupt CDS chr12 80,266,627 1 inv

15082-HCC-M 15082 TG12775 Ubxd8 3 prime 0.706 kb chr13 54,766,130 1 inv

15082-HCC-M 15082 TG12775 C1qtnf9 5 prime 62.033 kb chr14 61,337,672 1 same

15082-HCC-M 15082 TG12775 Dleu7 3 prime 63.473 kb chr14 62,848,325 1 inv



15082-HCC-M 15082 TG12775 Sh2d4b intron 1 disrupt CDS chr14 41,697,488 1 same

15082-HCC-M 15082 TG12775 BC021523 intron 1 disrupt CDS chr15 85,897,034 1 same

15082-HCC-M 15082 TG12775 Glt8d3 3 prime 94.854 kb chr15 93,010,661 1 inv

page 8


15082-HCC-M 15082 TG12775 Myo10 intron 1 disrupt CDS chr15 25,583,460 1 same


15082-HCC-M 15082 TG12775 App intron 11 disrupt CDS chr16 84,999,849 1 same

15082-HCC-M 15082 TG12775 Pou1f1 5 prime 28.594 kb chr16 65,505,722 1 same

15082-HCC-M 15082 TG12775 Slc35a5 intron 2 disrupt CDS chr16 45,156,354 1 inv

15082-HCC-M 15082 TG12775 Calm2 5 prime 34.771 kb chr17 87,880,954 1 inv

15082-HCC-M 15082 TG12775 Clpp intron 3 disrupt CDS chr17 57,131,713 1 same

15082-HCC-M 15082 TG12775 Tbc1d5 intron 2 not disrupt CDS chr17 51,270,399 1 inv

15082-HCC-M 15082 TG12775 Ypel5 intron 2 disrupt CDS chr17 73,197,903 1 same

15082-HCC-M 15082 TG12775 4833446K15Rik intron 2 disrupt CDS chr18 59,420,654 1 same

15082-HCC-M 15082 TG12775 Dym intron 16 disrupt CDS chr18 75,405,456 1 same


15082-HCC-M 15082 TG12775 Smad7 intron 3 disrupt CDS chr18 75,549,553 1 inv



15082-HCC-M 15082 TG12775 Saps3 intron 21 disrupt CDS chr19 3,461,083 1 same

15082-HCC-M 15082 TG12775 Abi1 intron 1 disrupt CDS chr2 22,886,298 1 inv

15082-HCC-M 15082 TG12775 Bmi1 3 prime 9.653 kb chr2 18,617,909 1 inv

15082-HCC-M 15082 TG12775 Kif16b intron 17 disrupt CDS chr2 142,563,691 1 inv

15082-HCC-M 15082 TG12775 Nat10 intron 5 disrupt CDS chr2 103,590,653 1 same

15082-HCC-M 15082 TG12775 Pax8 5 prime 5.095 kb chr2 24,336,181 1 inv

15082-HCC-M 15082 TG12775 Prrx2 intron 1 disrupt CDS chr2 30,722,388 1 same

15082-HCC-M 15082 TG12775 Rabgap1 intron 13 disrupt CDS chr2 37,379,767 1 inv

15082-HCC-M 15082 TG12775 Rsu1 intron 3 disrupt CDS chr2 13,153,759 1 same

15082-HCC-M 15082 TG12775 Trim44 intron 2 disrupt CDS chr2 102,219,790 1 same

15082-HCC-M 15082 TG12775 1810022K09Rik 5 prime 25.421 kb chr3 14,636,677 1 same

15082-HCC-M 15082 TG12775 EG381483 3 prime 85.599 kb chr3 149,094,403 1 inv

15082-HCC-M 15082 TG12775 Gpr89 5 prime 6.378 kb chr3 96,715,599 1 same

15082-HCC-M 15082 TG12775 Lhfp intron 2 disrupt CDS chr3 53,009,311 1 inv


15082-HCC-M 15082 TG12775 Ak3l1 5 prime 63.745 kb chr4 101,075,855 1 inv

15082-HCC-M 15082 TG12775 Glipr2 intron 4 disrupt CDS chr4 43,987,815 1 inv

15082-HCC-M 15082 TG12775 Ifne1 5 prime 18.020 kb chr4 88,544,125 1 same

15082-HCC-M 15082 TG12775 Leprot 3 prime 27.126 kb chr4 101,359,089 1 same

15082-HCC-M 15082 TG12775 Cd38 intron 1 disrupt CDS chr5 44,264,602 1 inv

15082-HCC-M 15082 TG12775 Pitpnb intron 8 disrupt CDS chr5 111,802,254 1 inv

15082-HCC-M 15082 TG12775 Hibadh intron 4 disrupt CDS chr6 52,534,141 1 same


15082-HCC-M 15082 TG12775 Nrf1 intron 1 not disrupt CDS chr6 29,999,712 1 same

15082-HCC-M 15082 TG12775 Nup210 intron 4 disrupt CDS chr6 91,039,424 1 inv

15082-HCC-M 15082 TG12775 Sox5 3 prime 436.401 kb chr6 143,721,599 1 inv

15082-HCC-M 15082 TG12775 Iqck intron 2 disrupt CDS chr7 126,019,604 1 same



page 9



15082-HCC-M 15082 TG12775 Tll1 3 prime 226.739 kb chr8 66,458,051 1 same

15082-HCC-M 15082 TG12775 Dusp9 5 prime 32.977 kb chrX 70,855,876 1 inv

15082-HCC-M 15082 TG12775 N/D N/D N/D chrX 78,191,874 1 N/D

15082-HCC-M 15082 TG12775 Tmem164 intron 2 disrupt CDS chrX 139,126,534 1 same


15090-HCC 15090 TG12740 Me1 5 prime 24.462 kb chr9 86,614,292 22 same


15090-HCC 15090 TG12740 Ndrg1 intron 1 not disrupt CDS chr15 66,794,296 13 inv

15090-HCC 15090 TG12740 Hmgn3 5 prime 98.860 kb chr9 83,139,072 12 inv

15090-HCC 15090 TG12740 Ibtk 5 prime 29.625 kb chr9 85,667,391 11 inv

15090-HCC 15090 TG12740 Nup155 exon 35 not disrupt CDS chr15 8,107,969 10 inv

15090-HCC 15090 TG12740 Tmtc2 intron 6 disrupt CDS chr10 104,759,458 8 inv

15090-HCC 15090 TG12740 Tor1aip2 exon 5 not disrupt CDS chr1 157,913,893 7 inv

15090-HCC 15090 TG12740 Dhx15 intron 1 disrupt CDS chr5 52,576,624 7 inv

15090-HCC 15090 TG12740 Aldh7a1 intron 4 disrupt CDS chr18 56,719,846 6 inv

15090-HCC 15090 TG12740 Xpo4 intron 22 disrupt CDS chr14 58,202,461 4 inv

15090-HCC 15090 TG12740 Gap43 intron 2 disrupt CDS chr16 42,253,461 4 same

15090-HCC 15090 TG12740 Srpk1 intron 2 disrupt CDS chr17 28,747,616 4 same


15090-HCC 15090 TG12740 Atrnl1 3 prime 19.424 kb chr19 58,227,254 4 same

15090-HCC 15090 TG12740 Dhtkd1 intron 4 disrupt CDS chr2 5,849,225 4 inv


15090-HCC 15090 TG12740 Ptk2b intron 1 not disrupt CDS chr14 66,897,681 3 same

15090-HCC 15090 TG12740 Lars intron 26 disrupt CDS chr18 42,376,988 3 inv

15090-HCC 15090 TG12740 Tshz1 intron 1 disrupt CDS chr18 84,199,798 3 same

15090-HCC 15090 TG12740 Cyp4a32 intron 4 disrupt CDS chr4 115,280,106 3 same

15090-HCC 15090 TG12740 Lhx5 5 prime 34.173 kb chr5 120,857,293 3 same

15090-HCC 15090 TG12740 Ibtk intron 8 disrupt CDS chr9 85,619,815 3 inv

15090-HCC 15090 TG12740 Plxna2 intron 3 disrupt CDS chr1 196,518,481 2 inv

15090-HCC 15090 TG12740 Wdr75 intron 18 disrupt CDS chr1 45,878,649 2 same

15090-HCC 15090 TG12740 Nkain2 intron 1 disrupt CDS chr10 32,192,381 2 same


15090-HCC 15090 TG12740 Pnpla8 intron 6 disrupt CDS chr12 45,398,636 2 same

15090-HCC 15090 TG12740 BC010304 5 prime 43.424 kb chr13 49,106,621 2 same

15090-HCC 15090 TG12740 Wnk2 intron 4 disrupt CDS chr13 49,194,720 2 inv

15090-HCC 15090 TG12740 Wnk2 5 prime 23.897 kb chr13 49,267,280 2 same



15090-HCC 15090 TG12740 Pgcp intron 1 not disrupt CDS chr15 33,043,250 2 inv

15090-HCC 15090 TG12740 Trio intron 1 disrupt CDS chr15 27,881,198 2 inv

15090-HCC 15090 TG12740 Ncam2 intron 1 disrupt CDS chr16 81,219,619 2 inv

15090-HCC 15090 TG12740 Btbd9 intron 1 not disrupt CDS chr17 30,672,757 2 inv

15090-HCC 15090 TG12740 8030462N17Rik intron 1 not disrupt CDS chr18 77,942,083 2 same

page 10


15090-HCC 15090 TG12740 Tm9sf3 intron 7 disrupt CDS chr19 41,312,737 2 inv

15090-HCC 15090 TG12740 3110001A13Rik intron 1 not disrupt CDS chr2 3,656,288 2 same


15090-HCC 15090 TG12740 Drctnnb1a intron 2 disrupt CDS chr5 23,500,396 2 inv

15090-HCC 15090 TG12740 Itpr2 intron 2 disrupt CDS chr6 146,381,426 2 same

15090-HCC 15090 TG12740 Tra2a intron 1 disrupt CDS chr6 49,211,589 2 inv

15090-HCC 15090 TG12740 BC003267 exon 4 disrupt CDS chr8 4,629,018 2 inv


15090-HCC 15090 TG12740 Cul5 intron 7 disrupt CDS chr9 53,446,756 2 inv

15090-HCC 15090 TG12740 Exph5 intron 3 disrupt CDS chr9 53,161,031 2 same




15090-HCC 15090 TG12740 Sept6 intron 2 disrupt CDS chr9 25,082,641 2 inv

15090-HCC 15090 TG12740 Ube2cbp 3 prime 167.557 kb chr9 86,190,966 2 same

15090-HCC 15090 TG12740 5033414K04Rik intron 1 not disrupt CDS chr1 84,257,645 1 same

15090-HCC 15090 TG12740 Akp5 3 prime 3.970 kb chr1 88,982,533 1 inv

15090-HCC 15090 TG12740 Atic intron 8 disrupt CDS chr1 71,615,265 1 same

15090-HCC 15090 TG12740 Gli2 5 prime 52.222 kb chr1 121,002,418 1 same

15090-HCC 15090 TG12740 Lbr intron 12 disrupt CDS chr1 183,747,602 1 same

15090-HCC 15090 TG12740 Lpgat1 3 prime 7.759 kb chr1 193,610,267 1 same



15090-HCC 15090 TG12740 Nav1 intron 1 disrupt CDS chr1 137,443,290 1 same

15090-HCC 15090 TG12740 Nbeal1 intron 4 disrupt CDS chr1 60,255,486 1 inv

15090-HCC 15090 TG12740 Plxna2 5 prime 212.746 kb chr1 196,430,316 1 inv

15090-HCC 15090 TG12740 Rab3gap1 intron 17 disrupt CDS chr1 129,830,645 1 inv

15090-HCC 15090 TG12740 Trp53bp2 intron 1 disrupt CDS chr1 184,352,107 1 same

15090-HCC 15090 TG12740 3110003A17Rik 5 prime 48.049 kb chr10 17,791,107 1 inv

15090-HCC 15090 TG12740 A230046K03Rik intron 6 disrupt CDS chr10 83,016,573 1 inv

15090-HCC 15090 TG12740 Lrrtm3 intron 2 disrupt CDS chr10 63,475,711 1 inv

15090-HCC 15090 TG12740 Metap2 5 prime 40.224 kb chr10 93,394,171 1 same


15090-HCC 15090 TG12740 Nr1h4 5 prime 5.383 kb chr10 88,974,755 1 same

15090-HCC 15090 TG12740 Ptprk intron 18 disrupt CDS chr10 28,288,593 1 inv

15090-HCC 15090 TG12740 Rab32 5 prime 71.385 kb chr10 10,349,390 1 inv

15090-HCC 15090 TG12740 Sec63 intron 1 disrupt CDS chr10 42,495,437 1 inv

15090-HCC 15090 TG12740 2010005J08Rik intron 2 not disrupt CDS chr11 5,626,793 1 inv

15090-HCC 15090 TG12740 Ebf1 intron 6 disrupt CDS chr11 44,486,670 1 inv

15090-HCC 15090 TG12740 Egfr 3 prime 5.942 kb chr11 16,819,852 1 inv



15090-HCC 15090 TG12740 Patz1 intron 3 disrupt CDS chr11 3,203,661 1 same

15090-HCC 15090 TG12740 Prpf8 intron 33 disrupt CDS chr11 75,317,784 1 inv

page 11


15090-HCC 15090 TG12740 Rffl intron 1 not disrupt CDS chr11 82,673,213 1 same

15090-HCC 15090 TG12740 Rtn4rl1 intron 1 disrupt CDS chr11 75,026,292 1 inv

15090-HCC 15090 TG12740 Smg6 intron 10 disrupt CDS chr11 74,843,222 1 same

15090-HCC 15090 TG12740 Tcf7 5 prime 29.938 kb chr11 52,125,690 1 inv

15090-HCC 15090 TG12740 Allc intron 3 disrupt CDS chr12 29,253,851 1 same

15090-HCC 15090 TG12740 AU021838 3 prime 66.998 kb chr12 58,407,852 1 inv

15090-HCC 15090 TG12740 Ddef2 intron 2 disrupt CDS chr12 21,190,873 1 inv

15090-HCC 15090 TG12740 Fcf1 5 prime 13.353 kb chr12 86,310,900 1 same




15090-HCC 15090 TG12740 Rcor1 intron 3 disrupt CDS chr12 112,324,830 1 inv

15090-HCC 15090 TG12740 Rian 3 prime 32.81 kb chr12 110,917,400 1 same

15090-HCC 15090 TG12740 Slc25a21 intron 1 disrupt CDS chr12 58,091,858 1 same

15090-HCC 15090 TG12740 Akr1c14 5 prime 38.561 kb chr13 4,051,107 1 same

15090-HCC 15090 TG12740 Arl15 3 prime 78.638 kb chr13 115,026,307 1 same


15090-HCC 15090 TG12740 Chrm3 5 prime 30.398 kb chr13 10,390,447 1 same

15090-HCC 15090 TG12740 Ell2 intron 2 disrupt CDS chr13 75,865,188 1 inv

15090-HCC 15090 TG12740 Elmo1 intron 14 disrupt CDS chr13 20,508,724 1 inv

15090-HCC 15090 TG12740 Fgd3 intron 1 not disrupt CDS chr13 49,399,764 1 same

15090-HCC 15090 TG12740 Mrs2l intron 6 disrupt CDS chr13 25,090,230 1 inv



15090-HCC 15090 TG12740 Phf2 intron 1 disrupt CDS chr13 48,947,262 1 same

15090-HCC 15090 TG12740 Pitrm1 intron 13 disrupt CDS chr13 6,561,763 1 inv

15090-HCC 15090 TG12740 Pitx1 5 prime 73.590 kb chr13 56,006,376 1 inv

15090-HCC 15090 TG12740 Ranbp9 intron 2 disrupt CDS chr13 43,571,144 1 same

15090-HCC 15090 TG12740 Rnf144b intron 6 disrupt CDS chr13 47,335,774 1 inv

15090-HCC 15090 TG12740 Wnk2 intron 24 disrupt CDS chr13 49,141,383 1 inv

15090-HCC 15090 TG12740 Wnk2 5 prime 16.060 kb chr13 49,259,443 1 inv

15090-HCC 15090 TG12740 4930452B06Rik intron 4 disrupt CDS chr14 9,429,742 1 same

15090-HCC 15090 TG12740 Dock5 intron 1 disrupt CDS chr14 68,545,065 1 same

15090-HCC 15090 TG12740 Duxbl 3 prime 37.291 kb chr14 27,125,877 1 same

15090-HCC 15090 TG12740 EG432867 5 prime 4.691 kb chr14 63,608,038 1 inv

15090-HCC 15090 TG12740 Esd 3 prime 1.885 kb chr14 75,152,135 1 same

15090-HCC 15090 TG12740 Exoc5 intron 12 disrupt CDS chr14 49,651,079 1 inv

15090-HCC 15090 TG12740 Kif13b intron 28 disrupt CDS chr14 65,387,097 1 same

15090-HCC 15090 TG12740 Lats2 intron 7 disrupt CDS chr14 58,312,713 1 same





15090-HCC 15090 TG12740 Nat12 intron 2 disrupt CDS chr14 49,795,012 1 inv

page 12


15090-HCC 15090 TG12740 Plekhc1 intron 2 disrupt CDS chr14 46,138,263 1 inv

15090-HCC 15090 TG12740 Ppp3cc intron 12 disrupt CDS chr14 70,622,090 1 inv

15090-HCC 15090 TG12740 Slmap intron 3 disrupt CDS chr14 27,291,226 1 inv

15090-HCC 15090 TG12740 Usp54 5 prime 8.822 kb chr14 21,446,398 1 inv

15090-HCC 15090 TG12740 2600005O03Rik 5 prime 15.673 kb chr15 54,937,706 1 same

15090-HCC 15090 TG12740 Cdh18 intron 10 disrupt CDS chr15 23,382,804 1 inv

15090-HCC 15090 TG12740 Eif3e intron 10 disrupt CDS chr15 43,092,503 1 same

15090-HCC 15090 TG12740 Fbxl7 intron 2 disrupt CDS chr15 26,514,231 1 same

15090-HCC 15090 TG12740 Mal2 intron 1 disrupt CDS chr15 54,408,923 1 same








15090-HCC 15090 TG12740 Npr3 3 prime 65.820 kb chr15 11,769,609 1 same

15090-HCC 15090 TG12740 Nsmce2 intron 4 disrupt CDS chr15 59,327,234 1 inv

15090-HCC 15090 TG12740 Nup155 3 prime 22.917 kb chr15 8,131,731 1 same

15090-HCC 15090 TG12740 Ranbp3l intron 1 disrupt CDS chr15 8,919,208 1 same

15090-HCC 15090 TG12740 Rhpn1 3 prime 4.373 kb chr15 75,549,028 1 same

15090-HCC 15090 TG12740 Stk3 intron 6 disrupt CDS chr15 34,941,484 1 same

15090-HCC 15090 TG12740 Ubr5 intron 50 disrupt CDS chr15 37,910,100 1 same

15090-HCC 15090 TG12740 A2bp1 intron 3 not disrupt CDS chr16 6,721,669 1 same

15090-HCC 15090 TG12740 Fgf12 intron 3 disrupt CDS chr16 28,244,243 1 inv

15090-HCC 15090 TG12740 Gramd1c intron 1 not disrupt CDS chr16 44,014,966 1 same

15090-HCC 15090 TG12740 Gt4-1 intron 1 not disrupt CDS chr16 13,267,181 1 inv



15090-HCC 15090 TG12740 Parn intron 22 disrupt CDS chr16 13,563,880 1 same

15090-HCC 15090 TG12740 Pcyt1a intron 3 disrupt CDS chr16 32,461,374 1 same

15090-HCC 15090 TG12740 Stxbp5l intron 5 disrupt CDS chr16 37,318,734 1 inv

15090-HCC 15090 TG12740 Zbtb20 5 prime 126.868 kb chr16 43,492,315 1 inv

15090-HCC 15090 TG12740 4932442K08Rik intron 2 disrupt CDS chr17 15,541,838 1 same

15090-HCC 15090 TG12740 Arid1b 5 prime 381.535 kb chr17 4,966,121 1 inv

15090-HCC 15090 TG12740 Cntnap5c intron 3 disrupt CDS chr17 58,149,911 1 same

15090-HCC 15090 TG12740 Decr2 3 prime 43.922 kb chr17 26,183,187 1 same

15090-HCC 15090 TG12740 Ehd3 intron 1 disrupt CDS chr17 74,165,113 1 same

15090-HCC 15090 TG12740 Jmjd2b intron 1 not disrupt CDS chr17 56,470,965 1 same





15090-HCC 15090 TG12740 Park2 intron 1 disrupt CDS chr17 11,258,690 1 same

page 13


15090-HCC 15090 TG12740 Supt3h intron 2 disrupt CDS chr17 45,005,136 1 same

15090-HCC 15090 TG12740 Tcte2 intron 1 not disrupt CDS chr17 13,878,731 1 same

15090-HCC 15090 TG12740 5330437I02Rik intron 13 disrupt CDS chr18 65,908,956 1 same


15090-HCC 15090 TG12740 Snx2 5 prime 73.111 kb chr18 53,307,403 1 inv

15090-HCC 15090 TG12740 Tcf4 intron 6 disrupt CDS chr18 69,687,559 1 same

15090-HCC 15090 TG12740 0610038F07Rik intron 1 disrupt CDS chr19 10,592,426 1 same

15090-HCC 15090 TG12740 Btaf1 intron 29 disrupt CDS chr19 37,071,143 1 same

15090-HCC 15090 TG12740 D19Wsu162e intron 1 disrupt CDS chr19 46,692,706 1 inv



15090-HCC 15090 TG12740 Tctn3 5 prime 2.061 kb chr19 40,688,766 1 inv

15090-HCC 15090 TG12740 Uhrf2 intron 3 disrupt CDS chr19 30,139,380 1 inv

15090-HCC 15090 TG12740 0610011L14Rik intron 3 disrupt CDS chr2 156,387,097 1 same

15090-HCC 15090 TG12740 Abcb11 intron 5 disrupt CDS chr2 69,161,418 1 same

15090-HCC 15090 TG12740 Asxl1 3 prime 2.288 kb chr2 153,232,031 1 same

15090-HCC 15090 TG12740 B230120H23Rik intron 9 disrupt CDS chr2 72,228,123 1 inv

15090-HCC 15090 TG12740 Cugbp1 intron 1 not disrupt CDS chr2 90,815,621 1 inv





15090-HCC 15090 TG12740 Nckap1 5 prime 5.466 kb chr2 80,426,588 1 same


15090-HCC 15090 TG12740 Plcb4 intron 25 disrupt CDS chr2 135,800,903 1 same

15090-HCC 15090 TG12740 Sfrs6 exon 6 not disrupt CDS chr2 162,761,369 1 same

15090-HCC 15090 TG12740 Sp3 5 prime 18.950 kb chr2 72,837,453 1 same

15090-HCC 15090 TG12740 Stk35 intron 3 not disrupt CDS chr2 129,652,457 1 inv

15090-HCC 15090 TG12740 Tanc1 intron 2 not disrupt CDS chr2 59,503,975 1 inv

15090-HCC 15090 TG12740 Tank intron 1 disrupt CDS chr2 61,425,186 1 inv

15090-HCC 15090 TG12740 Zfp106 intron 3 disrupt CDS chr2 120,370,362 1 inv

15090-HCC 15090 TG12740 Camk2d intron 2 disrupt CDS chr3 126,384,450 1 same

15090-HCC 15090 TG12740 Cth 3 prime 82.701 kb chr3 157,505,326 1 inv

15090-HCC 15090 TG12740 Gnai3 intron 1 disrupt CDS chr3 107,934,304 1 same

15090-HCC 15090 TG12740 Golim4 5 prime 20.515 kb chr3 75,781,268 1 inv





15090-HCC 15090 TG12740 Rapgef2 5 prime 76.018 kb chr3 79,025,815 1 inv

15090-HCC 15090 TG12740 Scye1 intron 1 disrupt CDS chr3 132,344,649 1 same

15090-HCC 15090 TG12740 Slc35a3 exon 8 not disrupt CDS chr3 116,374,519 1 inv


15090-HCC 15090 TG12740 Dnaja1 intron 3 disrupt CDS chr4 40,671,555 1 inv

page 14


15090-HCC 15090 TG12740 Frem1 5 prime 33.624 kb chr4 82,700,630 1 inv

15090-HCC 15090 TG12740 Hmgcl intron 1 disrupt CDS chr4 135,503,643 1 inv

15090-HCC 15090 TG12740 Mysm1 intron 1 disrupt CDS chr4 94,642,699 1 inv




15090-HCC 15090 TG12740 Ppm2c 5 prime 14.060 kb chr4 11,907,657 1 same

15090-HCC 15090 TG12740 Prdm2 5 prime 20.947 kb chr4 142,823,559 1 same

15090-HCC 15090 TG12740 Tesk2 intron 3 disrupt CDS chr4 116,444,199 1 inv

15090-HCC 15090 TG12740 Atxn2 intron 1 disrupt CDS chr5 122,166,770 1 same

15090-HCC 15090 TG12740 BC057022 intron 1 not disrupt CDS chr5 115,019,720 1 same

15090-HCC 15090 TG12740 Caln1 intron 4 disrupt CDS chr5 131,157,317 1 same

15090-HCC 15090 TG12740 Cux1 intron 3 disrupt CDS chr5 136,875,024 1 same

15090-HCC 15090 TG12740 Depdc5 3 prime 7.673 kb chr5 33,341,882 1 same


15090-HCC 15090 TG12740 Evi5 intron 16 disrupt CDS chr5 108,207,487 1 same


15090-HCC 15090 TG12740 Pdap1 intron 3 disrupt CDS chr5 145,895,889 1 same


15090-HCC 15090 TG12740 Suds3 3 prime 100.809 kb chr5 117,465,133 1 same

15090-HCC 15090 TG12740 Atf7ip intron 2 disrupt CDS chr6 136,511,360 1 same

15090-HCC 15090 TG12740 Chchd6 intron 4 disrupt CDS chr6 89,472,797 1 inv


15090-HCC 15090 TG12740 Ctnna2 5 prime 29.516 kb chr6 77,959,177 1 inv

15090-HCC 15090 TG12740 D430015B01Rik intron 5 disrupt CDS chr6 58,932,088 1 same

15090-HCC 15090 TG12740 Il23r intron 8 disrupt CDS chr6 67,384,224 1 same

15090-HCC 15090 TG12740 Loh12cr1 intron 3 disrupt CDS chr6 134,657,355 1 same

15090-HCC 15090 TG12740 Met intron 1 not disrupt CDS chr6 17,435,080 1 inv

15090-HCC 15090 TG12740 Ninj2 intron 1 disrupt CDS chr6 120,050,559 1 same

15090-HCC 15090 TG12740 Ninj2 intron 1 disrupt CDS chr6 120,069,653 1 same

15090-HCC 15090 TG12740 Vgll4 5 prime 26.360 kb chr6 114,898,130 1 same

15090-HCC 15090 TG12740 Inpp5a intron 4 disrupt CDS chr7 146,683,027 1 inv

15090-HCC 15090 TG12740 Ipo7 intron 1 disrupt CDS chr7 117,163,753 1 inv


15090-HCC 15090 TG12740 Usp29 exon 8 not disrupt CDS chr7 6,918,750 1 same



15090-HCC 15090 TG12740 Odz3 intron 23 disrupt CDS chr8 49,354,496 1 same

15090-HCC 15090 TG12740 Prdx2 intron 5 disrupt CDS chr8 87,497,137 1 same


15090-HCC 15090 TG12740 Bmper exon 15 not disrupt CDS chr9 23,288,600 1 same

15090-HCC 15090 TG12740 Cacna2d2 intron 5 disrupt CDS chr9 107,400,807 1 inv

15090-HCC 15090 TG12740 Cadm1 intron 5 disrupt CDS chr9 47,608,778 1 same

15090-HCC 15090 TG12740 Clstn2 5 prime 78.077 kb chr9 98,011,663 1 same

page 15


15090-HCC 15090 TG12740 Col12a1 3 prime 192.074 kb chr9 79,374,411 1 inv

15090-HCC 15090 TG12740 Cpne4 intron 2 disrupt CDS chr9 104,624,548 1 inv

15090-HCC 15090 TG12740 Gclc intron 1 disrupt CDS chr9 77,611,797 1 same

15090-HCC 15090 TG12740 Ibtk 3 prime 130.785 kb chr9 85,506,981 1 same

15090-HCC 15090 TG12740 Kif9 3 prime 16.844 kb chr9 110,444,522 1 same

15090-HCC 15090 TG12740 Lrrc1 3 prime 176.141 kb chr9 77,215,725 1 same

15090-HCC 15090 TG12740 Lrrfip2 intron 6 disrupt CDS chr9 111,101,194 1 same

15090-HCC 15090 TG12740 Me1 5 prime 22.302 kb chr9 86,612,132 1 inv









15090-HCC 15090 TG12740 Phip intron 15 disrupt CDS chr9 82,812,579 1 same

15090-HCC 15090 TG12740 Phip intron 7 disrupt CDS chr9 82,826,881 1 inv

15090-HCC 15090 TG12740 Setd2 intron 1 disrupt CDS chr9 110,455,218 1 inv


15090-HCC 15090 TG12740 Sorl1 3 prime 170.518 kb chr9 41,761,854 1 inv

15090-HCC 15090 TG12740 Stag1 intron 6 disrupt CDS chr9 100,680,332 1 same

15090-HCC 15090 TG12740 Tex264 intron 4 disrupt CDS chr9 106,570,204 1 same

15090-HCC 15090 TG12740 Tmed3 3 prime 5.861 kb chr9 89,593,968 1 same

15090-HCC 15090 TG12740 Ube2cbp 3 prime 180.065 kb chr9 86,178,458 1 same

15090-HCC 15090 TG12740 Zfp26 3 prime 27.191 kb chr9 20,237,210 1 inv

15090-HCC 15090 TG12740 Cul4b intron 22 disrupt CDS chrX 35,887,105 1 same

15090-HCC 15090 TG12740 N/D N/D N/D chrX 66,402,460 1 N/D

15090-HCC 15090 TG12740 Stag2 intron 1 not disrupt CDS chrX 39,523,607 1 inv

15091-HCC 15091 TG12740 Zhx3 intron 2 not disrupt CDS chr2 160,636,388 16 inv


15091-HCC 15091 TG12740 Hdlbp intron 3 disrupt CDS chr1 95,335,791 8 same

15091-HCC 15091 TG12740 Ncoa2 intron 4 disrupt CDS chr1 13,196,495 6 same


15091-HCC 15091 TG12740 Evi2b (Nf1) intron 3 not disrupt CDS chr11 79,335,352 5 same

15091-HCC 15091 TG12740 Rian 5 prime 4.132 kb chr12 110,838,022 5 inv

15091-HCC 15091 TG12740 5730596K20Rik intron 1 disrupt CDS chr19 7,579,099 5 inv

15091-HCC 15091 TG12740 Atg7 intron 18 disrupt CDS chr6 114,729,315 5 same

15091-HCC 15091 TG12740 Map2k5 intron 1 disrupt CDS chr9 63,223,159 5 inv

15091-HCC 15091 TG12740 Olfr765 5 prime 1.024 kb chr10 128,485,141 4 inv

15091-HCC 15091 TG12740 Itgb1bp1 intron 1 not disrupt CDS chr12 21,288,120 4 same



15091-HCC 15091 TG12740 Bnc2 intron 4 disrupt CDS chr4 83,966,177 4 same

page 16


15091-HCC 15091 TG12740 Rod1 intron 4 disrupt CDS chr4 59,528,330 4 inv

15091-HCC 15091 TG12740 Slc35d1 intron 7 disrupt CDS chr4 102,878,105 4 same

15091-HCC 15091 TG12740 Mbd3l1 3 prime 15.149 kb chr9 18,304,885 4 same

15091-HCC 15091 TG12740 Tmem30a 5 prime 9.073 kb chr9 79,650,310 4 inv

15091-HCC 15091 TG12740 Pah 3 prime 60.601 kb chr10 87,107,477 3 same



15091-HCC 15091 TG12740 Kcmf1 intron 3 disrupt CDS chr6 72,808,669 3 same


15091-HCC 15091 TG12740 BC031353 intron 1 disrupt CDS chr9 74,829,275 3 same

15091-HCC 15091 TG12740 R3hdm1 intron 1 not disrupt CDS chr1 130,028,379 2 inv

15091-HCC 15091 TG12740 Thap2 intron 2 disrupt CDS chr10 114,812,830 2 same

15091-HCC 15091 TG12740 Arrb2 3 prime 3.115 kb chr11 70,257,291 2 inv


15091-HCC 15091 TG12740 AK129128 intron 11 disrupt CDS chr13 76,255,960 2 inv

15091-HCC 15091 TG12740 Snrpc 3 prime 1.053 kb chr17 27,989,965 2 same

15091-HCC 15091 TG12740 1110006O17Rik 5 prime 0.209 kb chr18 35,881,354 2 same

15091-HCC 15091 TG12740 Csnk1a1 intron 4 disrupt CDS chr18 61,729,263 2 inv


15091-HCC 15091 TG12740 Paqr3 5 prime 7.554 kb chr5 97,548,169 2 same

15091-HCC 15091 TG12740 Fto intron 4 disrupt CDS chr8 93,973,244 2 inv

15091-HCC 15091 TG12740 Alg9 intron 14 disrupt CDS chr9 50,642,851 2 inv

15091-HCC 15091 TG12740 Ibtk intron 24 disrupt CDS chr9 85,593,767 2 inv


15091-HCC 15091 TG12740 Rbms3 intron 3 disrupt CDS chr9 116,889,288 2 same

15091-HCC 15091 TG12740 Aox1 intron 20 disrupt CDS chr1 58,130,339 1 inv

15091-HCC 15091 TG12740 Clasp1 intron 37 disrupt CDS chr1 120,497,629 1 inv

15091-HCC 15091 TG12740 Eya1 intron 12 disrupt CDS chr1 14,191,277 1 same


15091-HCC 15091 TG12740 Pcp4l1 5 prime 4.344 kb chr1 173,130,743 1 same

15091-HCC 15091 TG12740 Cbara1 5 prime 257.635 kb chr10 59,069,235 1 inv

15091-HCC 15091 TG12740 Lims1 intron 1 disrupt CDS chr10 57,824,333 1 inv



15091-HCC 15091 TG12740 Nkain2 intron 3 disrupt CDS chr10 31,988,973 1 same

15091-HCC 15091 TG12740 Osbpl8 5 prime 158.138 kb chr10 110,576,165 1 inv

15091-HCC 15091 TG12740 Sgpl1 intron 2 disrupt CDS chr10 60,593,567 1 same

15091-HCC 15091 TG12740 Slc35f1 5 prime 426.758 kb chr10 52,404,452 1 same

15091-HCC 15091 TG12740 Sobp intron 5 disrupt CDS chr10 42,784,069 1 inv

15091-HCC 15091 TG12740 Unc5b intron 1 disrupt CDS chr10 60,284,011 1 same

15091-HCC 15091 TG12740 Evi2b (Nf1) intron 2 not disrupt CDS chr11 79,339,220 1 inv

15091-HCC 15091 TG12740 Garnl4 intron 18 disrupt CDS chr11 74,210,092 1 inv



page 17



15091-HCC 15091 TG12740 Pafah1b1 intron 1 not disrupt CDS chr11 74,516,742 1 same

15091-HCC 15091 TG12740 Peli1 intron 1 not disrupt CDS chr11 20,992,497 1 inv

15091-HCC 15091 TG12740 Rasgef1c intron 1 not disrupt CDS chr11 49,731,976 1 same

15091-HCC 15091 TG12740 Sh3pxd2b 3 prime 20.554 kb chr11 32,348,737 1 same

15091-HCC 15091 TG12740 St6galnac2 exon 9 not disrupt CDS chr11 116,538,314 1 same

15091-HCC 15091 TG12740 Gphn intron 2 disrupt CDS chr12 79,476,102 1 inv





15091-HCC 15091 TG12740 Papola 3 prime 2.487 kb chr12 107,079,640 1 inv

15091-HCC 15091 TG12740 Rian 5 prime 5.091 kb chr12 110,837,063 1 inv

15091-HCC 15091 TG12740 Sipa1l1 5 prime 221.218 kb chr12 83,330,040 1 same

15091-HCC 15091 TG12740 Arl15 3 prime 51.851 kb chr13 114,999,520 1 same

15091-HCC 15091 TG12740 AU042651 intron 4 disrupt CDS chr13 56,555,393 1 same

15091-HCC 15091 TG12740 Bdp1 intron 34 disrupt CDS chr13 100,802,113 1 inv

15091-HCC 15091 TG12740 Col4a3bp intron 6 disrupt CDS chr13 97,379,098 1 same

15091-HCC 15091 TG12740 Emb intron 1 disrupt CDS chr13 118,014,907 1 same

15091-HCC 15091 TG12740 Mtap1b exon 5 disrupt CDS chr13 100,200,719 1 same

15091-HCC 15091 TG12740 Skiv2l2 intron 12 disrupt CDS chr13 113,695,112 1 inv

15091-HCC 15091 TG12740 Ddhd1 intron 1 disrupt CDS chr14 46,261,664 1 inv

15091-HCC 15091 TG12740 Diap3 intron 3 disrupt CDS chr14 87,473,229 1 same

15091-HCC 15091 TG12740 Gjb2 3 prime 6.231 kb chr14 57,717,271 1 same

15091-HCC 15091 TG12740 Il3ra 3 prime 85.391 kb chr14 15,273,395 1 inv

15091-HCC 15091 TG12740 Lcp1 intron 2 not disrupt CDS chr14 75,589,238 1 same

15091-HCC 15091 TG12740 Khdrbs3 intron 1 disrupt CDS chr15 68,774,698 1 inv

15091-HCC 15091 TG12740 Mkl1 intron 2 not disrupt CDS chr15 80,937,616 1 inv

15091-HCC 15091 TG12740 Leprel1 5 prime 64.255 kb chr16 26,170,125 1 same

15091-HCC 15091 TG12740 Lpp intron 4 not disrupt CDS chr16 24,586,293 1 inv

15091-HCC 15091 TG12740 Masp1 5 prime 41.719 kb chr16 23,562,382 1 inv



15091-HCC 15091 TG12740 Sfrs15 intron 1 disrupt CDS chr16 90,266,673 1 same

15091-HCC 15091 TG12740 Birc6 intron 65 disrupt CDS chr17 75,084,966 1 inv


15091-HCC 15091 TG12740 Rab5a intron 4 disrupt CDS chr17 53,638,650 1 same

15091-HCC 15091 TG12740 Ankrd15 3 prime 2.984 kb chr19 25,511,970 1 inv

15091-HCC 15091 TG12740 D19Wsu162e exon 4 not disrupt CDS chr19 46,729,470 1 same

15091-HCC 15091 TG12740 Ms4a6c 3 prime 5.054 kb chr19 11,561,736 1 inv

15091-HCC 15091 TG12740 Rfx3 intron 4 disrupt CDS chr19 27,914,696 1 inv

15091-HCC 15091 TG12740 BC020535 3 prime 25.992 kb chr2 152,933,454 1 inv

15091-HCC 15091 TG12740 LOC665001 3 prime 48.282 kb chr2 174,984,136 1 inv


page 18


15091-HCC 15091 TG12740 Nup188 intron 1 disrupt CDS chr2 30,146,044 1 same

15091-HCC 15091 TG12740 Scn1a 5 prime 26.120 kb chr2 66,305,014 1 inv

15091-HCC 15091 TG12740 Zc3h6 intron 9 disrupt CDS chr2 128,838,030 1 inv

15091-HCC 15091 TG12740 B3galnt1 5 prime 66.268 kb chr3 69,469,051 1 inv

15091-HCC 15091 TG12740 Car13 3 prime 27.349 kb chr3 14,690,351 1 inv

15091-HCC 15091 TG12740 Hiat1 intron 1 disrupt CDS chr3 116,360,955 1 same

15091-HCC 15091 TG12740 Lrrc7 intron 2 not disrupt CDS chr3 158,086,966 1 inv




15091-HCC 15091 TG12740 Fbxo42 intron 1 not disrupt CDS chr4 140,709,591 1 inv



15091-HCC 15091 TG12740 Nfyc intron 1 not disrupt CDS chr4 120,476,471 1 same

15091-HCC 15091 TG12740 Ttpa intron 4 disrupt CDS chr4 19,952,408 1 inv

15091-HCC 15091 TG12740 Ard1b 5 prime 22.015 kb chr5 97,843,364 1 same

15091-HCC 15091 TG12740 Clock intron 22 disrupt CDS chr5 76,654,826 1 inv

15091-HCC 15091 TG12740 Fgfbp1 3 prime 28.027 kb chr5 44,344,974 1 inv

15091-HCC 15091 TG12740 Kctd7 3 prime 24.767 kb chr5 130,656,445 1 same

15091-HCC 15091 TG12740 Med13l intron 2 disrupt CDS chr5 119,083,166 1 inv


15091-HCC 15091 TG12740 Srpk2 3 prime 128.913 kb chr5 22,993,476 1 same

15091-HCC 15091 TG12740 Uspl1 intron 3 disrupt CDS chr5 150,001,222 1 same

15091-HCC 15091 TG12740 Acrbp 3 prime 15.862 kb chr6 125,029,123 1 same

15091-HCC 15091 TG12740 Dusp16 intron 1 not disrupt CDS chr6 134,736,293 1 same

15091-HCC 15091 TG12740 Ipo8 intron 22 disrupt CDS chr6 148,726,961 1 same


15091-HCC 15091 TG12740 Tmem168 3 prime 93.905 kb chr6 13,464,158 1 inv


15091-HCC 15091 TG12740 Ccdc101 intron 1 not disrupt CDS chr7 133,795,426 1 same

15091-HCC 15091 TG12740 Grlf1 intron 1 not disrupt CDS chr7 17,175,240 1 same

15091-HCC 15091 TG12740 Inpp5f intron 1 disrupt CDS chr7 135,769,319 1 same

15091-HCC 15091 TG12740 Mvp intron 1 not disrupt CDS chr7 134,150,752 1 inv

15091-HCC 15091 TG12740 Nucb2 3 prime 11.345 kb chr7 123,694,937 1 same

15091-HCC 15091 TG12740 Phca intron 1 disrupt CDS chr7 105,434,017 1 inv

15091-HCC 15091 TG12740 Plekha4 intron 7 disrupt CDS chr7 52,793,489 1 same

15091-HCC 15091 TG12740 Ppfibp2 intron 18 disrupt CDS chr7 114,880,613 1 inv

15091-HCC 15091 TG12740 Rras2 5 prime 14.014 kb chr7 121,275,309 1 same

15091-HCC 15091 TG12740 Stim1 intron 1 disrupt CDS chr7 109,440,700 1 inv

15091-HCC 15091 TG12740 Syt17 intron 5 disrupt CDS chr7 125,573,024 1 inv

15091-HCC 15091 TG12740 Ube3a 3 prime 6.864 kb chr7 66,568,961 1 inv

15091-HCC 15091 TG12740 Inpp4b intron 9 disrupt CDS chr8 84,433,737 1 same


15091-HCC 15091 TG12740 Nek1 intron 15 disrupt CDS chr8 63,525,468 1 inv

page 19



15091-HCC 15091 TG12740 Palld intron 2 disrupt CDS chr8 64,230,215 1 same

15091-HCC 15091 TG12740 Psd3 intron 6 disrupt CDS chr8 70,352,186 1 inv

15091-HCC 15091 TG12740 Sh3rf1 3 prime 18.356 kb chr8 63,893,225 1 same

15091-HCC 15091 TG12740 Slc10a2 intron 2 disrupt CDS chr8 5,094,834 1 inv


15091-HCC 15091 TG12740 4930486G11Rik intron 3 disrupt CDS chr9 81,867,159 1 inv

15091-HCC 15091 TG12740 Anp32a intron 1 disrupt CDS chr9 62,206,144 1 inv

15091-HCC 15091 TG12740 Arhgef12 intron 39 disrupt CDS chr9 42,778,162 1 inv

15091-HCC 15091 TG12740 C530008M07Rik intron 3 disrupt CDS chr9 76,348,154 1 same

15091-HCC 15091 TG12740 Fbxo9 intron 7 disrupt CDS chr9 77,937,756 1 same

15091-HCC 15091 TG12740 Kirrel3 intron 1 disrupt CDS chr9 34,660,843 1 same

15091-HCC 15091 TG12740 Lyzl4 3 prime 65.691 kb chr9 121,484,993 1 same




15091-HCC 15091 TG12740 Phip intron 15 disrupt CDS chr9 82,816,208 1 same

15091-HCC 15091 TG12740 Rbms3 intron 3 disrupt CDS chr9 116,889,067 1 same

15091-HCC 15091 TG12740 Ripply2 5 prime 6.911 kb chr9 86,907,840 1 inv

15091-HCC 15091 TG12740 Setd2 intron 13 disrupt CDS chr9 110,498,765 1 inv

15091-HCC 15091 TG12740 Snx14 5 prime 2.030 kb chr9 88,335,797 1 inv

15091-HCC 15091 TG12740 Zbtb16 intron 4 disrupt CDS chr9 48,486,275 1 same

15091-HCC 15091 TG12740 Dmd intron 2 disrupt CDS chrX 80,461,321 1 inv

15091-HCC 15091 TG12740 Mid1 intron 1 not disrupt CDS chrX 166,205,962 1 same


15091-HCC 15091 TG12740 Rp2h intron 1 disrupt CDS chrX 19,949,596 1 same

15091-HCC 15091 TG12740 Slc16a2 intron 1 disrupt CDS chrX 101,000,679 1 inv

15091-HCC 15091 TG12740 Stag2 3 prime 13.725 kb chrX 39,644,077 1 same


15374-HCC 15374 TG12775 Strbp intron 10 disrupt CDS chr2 37,474,243 4 inv

15374-HCC 15374 TG12775 Rgs6 intron 12 disrupt CDS chr12 84,172,587 3 inv

15374-HCC 15374 TG12775 Gnaq intron 2 disrupt CDS chr19 16,380,333 3 same

15374-HCC 15374 TG12775 Saps3 intron 4 disrupt CDS chr19 3,521,235 3 same

15374-HCC 15374 TG12775 Lace1 intron 12 disrupt CDS chr10 42,035,288 2 same

15374-HCC 15374 TG12775 Ppfia2 intron 3 disrupt CDS chr10 106,073,659 2 inv

15374-HCC 15374 TG12775 Wdr51b 3 prime 25.884 kb chr10 98,686,506 2 inv

15374-HCC 15374 TG12775 Iqgap2 intron 1 disrupt CDS chr13 96,644,824 2 inv

15374-HCC 15374 TG12775 Sptlc1 intron 3 disrupt CDS chr13 53,464,374 2 same

15374-HCC 15374 TG12775 Acin1 intron 8 disrupt CDS chr14 55,276,562 2 same

15374-HCC 15374 TG12775 Larp4 3 prime 2.422 kb chr15 99,849,211 2 same

15374-HCC 15374 TG12775 Pcbp2 intron 14 disrupt CDS chr15 102,325,285 2 inv

15374-HCC 15374 TG12775 Igf2r intron 35 disrupt CDS chr17 12,889,872 2 inv

15374-HCC 15374 TG12775 Mapk14 intron 9 disrupt CDS chr17 28,875,544 2 inv

15374-HCC 15374 TG12775 E130014J05Rik intron 1 not disrupt CDS chr3 133,186,443 2 inv

page 20


15374-HCC 15374 TG12775 Faf1 intron 8 disrupt CDS chr4 109,485,814 2 same

15374-HCC 15374 TG12775 Nsmaf intron 1 disrupt CDS chr4 6,379,191 2 same

15374-HCC 15374 TG12775 Reln intron 49 disrupt CDS chr5 21,433,849 2 same


15374-HCC 15374 TG12775 Fgd5 exon 1 disrupt CDS chr6 91,938,499 2 inv

15374-HCC 15374 TG12775 Dock1 intron 31 disrupt CDS chr7 142,282,975 2 inv

15374-HCC 15374 TG12775 0710008K08Rik intron 4 disrupt CDS chr8 11,506,550 2 same

15374-HCC 15374 TG12775 Map2k5 intron 15 disrupt CDS chr9 63,105,081 2 same

15374-HCC 15374 TG12775 Fasl 5 prime 26.368 kb chr1 163,744,994 1 inv

15374-HCC 15374 TG12775 Mosc2 exon 3 disrupt CDS chr1 186,657,754 1 inv

15374-HCC 15374 TG12775 Pard3b intron 15 disrupt CDS chr1 62,390,221 1 same

15374-HCC 15374 TG12775 Per2 5 prime 30.956 kb chr1 93,386,861 1 same

15374-HCC 15374 TG12775 Lace1 intron 2 disrupt CDS chr10 42,166,012 1 inv

15374-HCC 15374 TG12775 Lama2 intron 20 disrupt CDS chr10 26,925,249 1 same



15374-HCC 15374 TG12775 Garnl4 intron 17 disrupt CDS chr11 74,211,751 1 same


15374-HCC 15374 TG12775 Smg6 intron 10 disrupt CDS chr11 74,820,472 1 same

15374-HCC 15374 TG12775 Znrf3 intron 1 disrupt CDS chr11 5,332,832 1 inv

15374-HCC 15374 TG12775 1110018G07Rik 5 prime 8.495 kb chr12 86,300,653 1 same


15374-HCC 15374 TG12775 9030617O03Rik intron 7 disrupt CDS chr12 102,085,247 1 inv

15374-HCC 15374 TG12775 Coch 5 prime 15.794 kb chr12 52,690,966 1 inv

15374-HCC 15374 TG12775 Dbpht2 3 prime 94.375 kb chr12 75,495,830 1 inv

15374-HCC 15374 TG12775 Foxn3 intron 4 disrupt CDS chr12 100,473,210 1 inv

15374-HCC 15374 TG12775 Foxn3 intron 1 not disrupt CDS chr12 100,673,953 1 same

15374-HCC 15374 TG12775 Fut8 intron 2 not disrupt CDS chr12 78,399,824 1 same


15374-HCC 15374 TG12775 Immp2l intron 4 disrupt CDS chr12 41,896,032 1 same







15374-HCC 15374 TG12775 Ncoa1 intron 1 not disrupt CDS chr12 4,470,368 1 inv

15374-HCC 15374 TG12775 Pygl intron 9 disrupt CDS chr12 71,302,039 1 inv

15374-HCC 15374 TG12775 Rab10 intron 2 disrupt CDS chr12 3,260,240 1 same

15374-HCC 15374 TG12775 Sfrs5 intron 2 disrupt CDS chr12 82,047,747 1 same

15374-HCC 15374 TG12775 Smoc1 intron 7 disrupt CDS chr12 82,258,669 1 same

15374-HCC 15374 TG12775 Strn3 intron 8 disrupt CDS chr12 52,742,696 1 inv

15374-HCC 15374 TG12775 Timm9 5 prime 10.560 kb chr12 72,248,222 1 inv

15374-HCC 15374 TG12775 Ywhaq intron 4 disrupt CDS chr12 21,400,492 1 same

page 21


15374-HCC 15374 TG12775 Yy1 intron 1 disrupt CDS chr12 110,036,955 1 inv

15374-HCC 15374 TG12775 5033411D12Rik intron 9 disrupt CDS chr13 17,538,254 1 inv

15374-HCC 15374 TG12775 Adk intron 3 disrupt CDS chr14 21,984,107 1 inv

15374-HCC 15374 TG12775 Adk intron 9 disrupt CDS chr14 22,219,897 1 inv



15374-HCC 15374 TG12775 Nrg3 intron 1 disrupt CDS chr14 40,247,368 1 same

15374-HCC 15374 TG12775 Khdrbs3 intron 2 disrupt CDS chr15 68,832,586 1 same


15374-HCC 15374 TG12775 Prkag1 5 prime 10.682 kb chr15 98,672,621 1 same

15374-HCC 15374 TG12775 Stk3 intron 8 disrupt CDS chr15 34,914,174 1 inv


15374-HCC 15374 TG12775 Crebbp intron 28 disrupt CDS chr16 4,091,373 1 inv

15374-HCC 15374 TG12775 Nudt12 5 prime 65.868 kb chr17 59,218,613 1 same

15374-HCC 15374 TG12775 Qk intron 4 disrupt CDS chr17 10,464,032 1 inv



15374-HCC 15374 TG12775 Bbox1 intron 3 disrupt CDS chr2 110,116,535 1 inv

15374-HCC 15374 TG12775 Etl4 5 prime 538.961 kb chr2 20,193,201 1 inv

15374-HCC 15374 TG12775 Gpr158 intron 8 disrupt CDS chr2 21,734,234 1 same

15374-HCC 15374 TG12775 Mbd5 5 prime 140.653 kb chr2 49,031,936 1 inv

15374-HCC 15374 TG12775 Mbd5 intron 1 disrupt CDS chr2 49,105,495 1 inv


15374-HCC 15374 TG12775 Nmi intron 3 disrupt CDS chr2 51,813,229 1 same

15374-HCC 15374 TG12775 Plcb1 intron 3 disrupt CDS chr2 134,860,185 1 inv


15374-HCC 15374 TG12775 Trpm7 intron 21 disrupt CDS chr2 126,647,444 1 inv

15374-HCC 15374 TG12775 Atp1a1 intron 1 disrupt CDS chr3 101,407,143 1 same

15374-HCC 15374 TG12775 Tacr3 intron 3 disrupt CDS chr3 134,554,456 1 same


15374-HCC 15374 TG12775 9530002B09Rik 3 prime 65.426 kb chr4 122,447,804 1 inv

15374-HCC 15374 TG12775 Foxj3 intron 2 disrupt CDS chr4 119,239,469 1 same

15374-HCC 15374 TG12775 Lyn intron 1 not disrupt CDS chr4 3,645,894 1 same

15374-HCC 15374 TG12775 Rusc2 intron 1 not disrupt CDS chr4 43,405,438 1 same

15374-HCC 15374 TG12775 Usp48 intron 1 disrupt CDS chr4 137,156,275 1 inv

15374-HCC 15374 TG12775 2900024C23Rik intron 1 disrupt CDS chr5 108,395,548 1 inv



15374-HCC 15374 TG12775 Hs3st1 intron 2 not disrupt CDS chr5 40,089,356 1 same





15374-HCC 15374 TG12775 Pde3a intron 1 disrupt CDS chr6 141,226,666 1 same

page 22


15374-HCC 15374 TG12775 Rassf8 3 prime 5.586 kb chr6 145,771,690 1 same

15374-HCC 15374 TG12775 Clpb intron 3 disrupt CDS chr7 108,842,370 1 same

15374-HCC 15374 TG12775 Ipo7 intron 5 disrupt CDS chr7 117,181,173 1 inv


15374-HCC 15374 TG12775 Supt5h intron 3 disrupt CDS chr7 29,115,848 1 inv

15374-HCC 15374 TG12775 Vmn2r59 5 prime 25.003 kb chr7 49,339,354 1 same

15374-HCC 15374 TG12775 Ces7 3 prime 95.190 kb chr8 95,964,417 1 inv

15374-HCC 15374 TG12775 Elavl1 intron 1 not disrupt CDS chr8 4,312,688 1 inv

15374-HCC 15374 TG12775 Lonp2 intron 11 disrupt CDS chr8 89,201,231 1 same

15374-HCC 15374 TG12775 Zfp703 5 prime 27.252 kb chr8 28,064,682 1 same

15374-HCC 15374 TG12775 Bckdhb intron 8 disrupt CDS chr9 83,951,071 1 same

15374-HCC 15374 TG12775 D930028F11Rik 3 prime 33.049 kb chr9 48,240,652 1 inv


15374-HCC 15374 TG12775 Pknox2 5 prime 34.974 kb chr9 36,989,873 1 same

15374-HCC 15374 TG12775 Rasa2 intron 4 disrupt CDS chr9 96,503,003 1 same

15374-HCC 15374 TG12775 Stag1 intron 16 disrupt CDS chr9 100,788,004 1 same

15374-HCC 15374 TG12775 Hcfc1 exon 4 disrupt CDS chrX 71,203,779 1 inv


15421-HCC 15421 TG12740 Rasgrf1 intron 8 disrupt CDS chr9 89,867,936 36 same


15421-HCC 15421 TG12740 Mrpl30 intron 1 not disrupt CDS chr1 37,949,349 20 inv

15421-HCC 15421 TG12740 Xpo6 intron 17 disrupt CDS chr7 133,255,504 18 same

15421-HCC 15421 TG12740 Acbd3 intron 4 disrupt CDS chr1 182,668,342 17 same

15421-HCC 15421 TG12740 Rian intron 2 not disrupt CDS chr12 110,848,589 16 same

15421-HCC 15421 TG12740 Pik3c2a 5 prime 15.013 kb chr7 123,601,985 16 inv

15421-HCC 15421 TG12740 Lrpprc intron 6 disrupt CDS chr17 85,171,112 10 inv

15421-HCC 15421 TG12740 Ppp6c intron 1 disrupt CDS chr2 39,066,720 10 inv

15421-HCC 15421 TG12740 Mex3c intron 1 disrupt CDS chr18 73,738,031 8 same

15421-HCC 15421 TG12740 Aox1 intron 7 disrupt CDS chr1 58,112,663 4 inv


15421-HCC 15421 TG12740 Itfg1 intron 10 disrupt CDS chr8 88,276,863 4 same

15421-HCC 15421 TG12740 Ush2a intron 42 disrupt CDS chr1 190,562,744 3 inv

15421-HCC 15421 TG12740 Ap4s1 3 prime 60.558 kb chr12 52,900,476 3 same

15421-HCC 15421 TG12740 Tspyl5 5 prime 88.730 kb chr15 33,706,368 3 same

15421-HCC 15421 TG12740 Camk1d intron 7 disrupt CDS chr2 5,233,459 3 same


15421-HCC 15421 TG12740 Gys2 intron 12 disrupt CDS chr6 142,392,261 3 same

15421-HCC 15421 TG12740 Eif3f intron 1 disrupt CDS chr7 116,079,848 3 inv




15421-HCC 15421 TG12740 Als2cr2 intron 9 disrupt CDS chr1 59,049,615 2 same

15421-HCC 15421 TG12740 Cnga3 3 prime 32.523 kb chr1 37,352,752 2 inv


page 23


15421-HCC 15421 TG12740 Nfasc intron 8 disrupt CDS chr1 134,524,991 2 inv

15421-HCC 15421 TG12740 Scyl1bp1 3 prime 43.164 kb chr1 165,290,608 2 inv

15421-HCC 15421 TG12740 Rabep1 intron 1 disrupt CDS chr11 70,686,510 2 inv

15421-HCC 15421 TG12740 Wdr68 intron 1 disrupt CDS chr11 105,902,482 2 same

15421-HCC 15421 TG12740 Akr1c19 3 prime 6.530 kb chr13 4,254,134 2 same

15421-HCC 15421 TG12740 1700011H14Rik intron 5 disrupt CDS chr14 49,853,728 2 inv


15421-HCC 15421 TG12740 Phr1 intron 47 disrupt CDS chr14 103,592,155 2 same

15421-HCC 15421 TG12740 Pgcp intron 5 disrupt CDS chr15 33,300,264 2 same


15421-HCC 15421 TG12740 Dyrk1a 3 prime 48.421 kb chr16 94,962,420 2 inv

15421-HCC 15421 TG12740 Man2a1 intron 19 disrupt CDS chr17 65,089,982 2 same

15421-HCC 15421 TG12740 Crem 5 prime 23.314 kb chr18 3,360,901 2 inv

15421-HCC 15421 TG12740 B230339M05Rik intron 13 disrupt CDS chr2 158,271,826 2 same

15421-HCC 15421 TG12740 Fmn1 intron 16 disrupt CDS chr2 113,518,844 2 same



15421-HCC 15421 TG12740 Ephb4 intron 4 disrupt CDS chr5 137,801,152 2 same


15421-HCC 15421 TG12740 Phf14 3 prime 63.496 kb chr6 12,021,508 2 inv

15421-HCC 15421 TG12740 Large intron 6 disrupt CDS chr8 75,477,999 2 same

15421-HCC 15421 TG12740 Pdcd6ip intron 3 disrupt CDS chr9 113,606,303 2 same


15421-HCC 15421 TG12740 4931408C20Rik 3 prime 61.772 kb chr1 26,682,533 1 inv

15421-HCC 15421 TG12740 9430031J16Rik 3 prime 22.253 kb chr1 81,290,479 1 inv

15421-HCC 15421 TG12740 Actr3 intron 2 disrupt CDS chr1 127,313,289 1 inv

15421-HCC 15421 TG12740 B830045N13Rik intron 7 disrupt CDS chr1 148,734,169 1 same

15421-HCC 15421 TG12740 Cenpf intron 7 disrupt CDS chr1 191,500,889 1 same

15421-HCC 15421 TG12740 Daf2 3 prime 73.395 kb chr1 132,246,181 1 inv

15421-HCC 15421 TG12740 Dennd1b intron 17 disrupt CDS chr1 141,039,920 1 same

15421-HCC 15421 TG12740 Hecw2 intron 1 not disrupt CDS chr1 54,219,706 1 inv

15421-HCC 15421 TG12740 Hs6st1 intron 1 disrupt CDS chr1 36,150,124 1 inv

15421-HCC 15421 TG12740 Lin9 intron 12 disrupt CDS chr1 182,613,354 1 same


15421-HCC 15421 TG12740 Pam intron 1 not disrupt CDS chr1 99,986,963 1 inv

15421-HCC 15421 TG12740 Prelp exon 3 not disrupt CDS chr1 135,807,422 1 same

15421-HCC 15421 TG12740 Rrp15 intron 4 disrupt CDS chr1 188,551,184 1 inv

15421-HCC 15421 TG12740 Stx6 3 prime 69.493 kb chr1 157,120,140 1 inv

15421-HCC 15421 TG12740 Aldh8a1 3 prime 21.582 kb chr10 21,137,966 1 inv

15421-HCC 15421 TG12740 Herc4 intron 11 disrupt CDS chr10 62,749,519 1 inv

15421-HCC 15421 TG12740 Zbtb24 5 prime 33.656 kb chr10 41,151,724 1 inv

15421-HCC 15421 TG12740 D11Wsu99e intron 1 disrupt CDS chr11 113,539,317 1 same

15421-HCC 15421 TG12740 Fat2 exon 1 disrupt CDS chr11 55,123,591 1 same


page 24


15421-HCC 15421 TG12740 Tcf7 intron 1 disrupt CDS chr11 52,092,291 1 same

15421-HCC 15421 TG12740 Utp6 3 prime 72.613 kb chr11 79,703,276 1 inv

15421-HCC 15421 TG12740 Xpo1 3 prime 95.144 kb chr11 23,292,741 1 same

15421-HCC 15421 TG12740 Dgkb intron 22 disrupt CDS chr12 39,317,734 1 same

15421-HCC 15421 TG12740 Immp2l 5 prime 1356.986 kb chr12 41,699,587 1 same







15421-HCC 15421 TG12740 Npas3 intron 3 disrupt CDS chr12 54,629,836 1 same

15421-HCC 15421 TG12740 Amph intron 5 disrupt CDS chr13 19,184,862 1 same

15421-HCC 15421 TG12740 Erbb2ip intron 14 disrupt CDS chr13 104,641,051 1 same

15421-HCC 15421 TG12740 Irx4 5 prime 27.467 kb chr13 73,379,576 1 same

15421-HCC 15421 TG12740 Lrrc16 5 prime 44.116 kb chr13 24,416,775 1 inv




15421-HCC 15421 TG12740 Nnt intron 12 disrupt CDS chr13 120,153,327 1 same

15421-HCC 15421 TG12740 Gcap14 intron 10 disrupt CDS chr14 37,700,560 1 inv


15421-HCC 15421 TG12740 Vcl intron 20 disrupt CDS chr14 21,850,115 1 inv

15421-HCC 15421 TG12740 Mafa 3 prime 9.499 kb chr15 75,568,853 1 same

15421-HCC 15421 TG12740 Tcf20 intron 1 not disrupt CDS chr15 82,725,648 1 same

15421-HCC 15421 TG12740 Gm606 5 prime 61.838 kb chr16 27,051,898 1 inv

15421-HCC 15421 TG12740 Myh11 intron 41 not disrupt CDS chr16 14,197,236 1 same

15421-HCC 15421 TG12740 Mylk intron 2 disrupt CDS chr16 34,833,619 1 inv


15421-HCC 15421 TG12740 Robo1 5 prime 385.932 kb chr16 72,660,413 1 same

15421-HCC 15421 TG12740 Son exon 12 not disrupt CDS chr16 91,679,170 1 inv

15421-HCC 15421 TG12740 Fprl1 3 prime 3.007 kb chr17 18,111,648 1 inv

15421-HCC 15421 TG12740 Haao 5 prime 60.317 kb chr17 84,306,447 1 inv

15421-HCC 15421 TG12740 Mdga1 5 prime 31.314 kb chr17 30,056,141 1 inv



15421-HCC 15421 TG12740 Plg intron 11 disrupt CDS chr17 12,596,170 1 same

15421-HCC 15421 TG12740 Tulp4 intron 11 disrupt CDS chr17 6,224,733 1 inv

15421-HCC 15421 TG12740 Diap1 intron 16 disrupt CDS chr18 38,028,417 1 same

15421-HCC 15421 TG12740 Klhl14 3 prime 176.856 kb chr18 21,634,013 1 same



15421-HCC 15421 TG12740 Setbp1 intron 3 disrupt CDS chr18 79,021,448 1 same

15421-HCC 15421 TG12740 Socs6 5 prime 26.367 kb chr18 89,089,966 1 inv

page 25


15421-HCC 15421 TG12740 Svil intron 1 not disrupt CDS chr18 4,939,344 1 same

15421-HCC 15421 TG12740 1810073H04Rik intron 2 disrupt CDS chr19 31,973,269 1 same

15421-HCC 15421 TG12740 Mtl5 intron 1 disrupt CDS chr19 3,391,020 1 same


15421-HCC 15421 TG12740 Prkg1 intron 3 disrupt CDS chr19 31,221,117 1 same

15421-HCC 15421 TG12740 Sorcs3 3 prime 48.698 kb chr19 48,928,693 1 inv

15421-HCC 15421 TG12740 Camk1d intron 2 disrupt CDS chr2 5,440,014 1 inv

15421-HCC 15421 TG12740 Fmn1 intron 16 disrupt CDS chr2 113,491,258 1 inv

15421-HCC 15421 TG12740 Stk4 intron 9 disrupt CDS chr2 163,935,219 1 same

15421-HCC 15421 TG12740 Elovl6 5 prime 136.005 kb chr3 129,205,406 1 inv

15421-HCC 15421 TG12740 Gatad2b 5 prime 38.235 kb chr3 90,123,807 1 same

15421-HCC 15421 TG12740 Hiat1 intron 5 disrupt CDS chr3 116,348,112 1 inv



15421-HCC 15421 TG12740 Sass6 intron 2 disrupt CDS chr3 116,307,882 1 inv

15421-HCC 15421 TG12740 Sprr1b 5 prime 7.687 kb chr3 92,250,388 1 inv

15421-HCC 15421 TG12740 Vav3 intron 1 disrupt CDS chr3 109,187,293 1 same

15421-HCC 15421 TG12740 2900042B11Rik intron 1 not disrupt CDS chr4 106,931,749 1 inv

15421-HCC 15421 TG12740 Cpne3 intron 1 not disrupt CDS chr4 19,489,930 1 inv



15421-HCC 15421 TG12740 Rasef intron 2 disrupt CDS chr4 73,423,722 1 same

15421-HCC 15421 TG12740 Reck exon 21 not disrupt CDS chr4 43,956,981 1 same

15421-HCC 15421 TG12740 Skint6 intron 6 disrupt CDS chr4 112,858,861 1 same

15421-HCC 15421 TG12740 Zyg11b exon 14 not disrupt CDS chr4 107,907,208 1 inv




15421-HCC 15421 TG12740 Grm8 intron 2 disrupt CDS chr6 28,056,563 1 inv

15421-HCC 15421 TG12740 Mkln1 intron 6 disrupt CDS chr6 31,396,133 1 same



15421-HCC 15421 TG12740 Nt5c3 intron 1 disrupt CDS chr6 56,857,318 1 same

15421-HCC 15421 TG12740 Plxnd1 5 prime 44.413 kb chr6 115,989,436 1 same

15421-HCC 15421 TG12740 Snd1 intron 12 disrupt CDS chr6 28,619,006 1 inv

15421-HCC 15421 TG12740 Tas2r108 3 prime 11.812 kb chr6 40,456,296 1 same

15421-HCC 15421 TG12740 Chd2 intron 2 disrupt CDS chr7 80,662,703 1 inv

15421-HCC 15421 TG12740 Chrdl2 3 prime 32.981 kb chr7 107,216,217 1 same

15421-HCC 15421 TG12740 Dkk3 5 prime 37.142 kb chr7 119,339,713 1 same

15421-HCC 15421 TG12740 Fchsd2 intron 8 disrupt CDS chr7 108,349,031 1 same


15421-HCC 15421 TG12740 Nell1 intron 12 disrupt CDS chr7 57,544,027 1 inv

15421-HCC 15421 TG12740 Tmem135 intron 4 disrupt CDS chr7 96,403,117 1 inv

15421-HCC 15421 TG12740 Ankrd11 intron 2 not disrupt CDS chr8 125,481,428 1 inv

page 26


15421-HCC 15421 TG12740 Ankrd11 intron 1 not disrupt CDS chr8 125,563,717 1 inv

15421-HCC 15421 TG12740 Fto intron 8 disrupt CDS chr8 94,144,224 1 same

15421-HCC 15421 TG12740 Nek1 intron 3 disrupt CDS chr8 63,486,200 1 inv

15421-HCC 15421 TG12740 1700057G04Rik intron 1 not disrupt CDS chr9 92,204,386 1 inv

15421-HCC 15421 TG12740 Acpl2 5 prime 11.166 kb chr9 96,801,007 1 same

15421-HCC 15421 TG12740 Adamts15 3 prime 81.432 kb chr9 30,648,605 1 same

15421-HCC 15421 TG12740 Aqp9 3 prime 98.134 kb chr9 70,912,962 1 inv

15421-HCC 15421 TG12740 Dixdc1 intron 17 disrupt CDS chr9 50,487,311 1 same

15421-HCC 15421 TG12740 Ibtk intron 2 disrupt CDS chr9 85,631,014 1 same





15421-HCC 15421 TG12740 Rnf7 5 prime 14.564 kb chr9 96,393,578 1 same

15421-HCC 15421 TG12740 Rpsa intron 1 not disrupt CDS chr9 120,037,296 1 inv

15421-HCC 15421 TG12740 Tfdp2 3 prime 13.516 kb chr9 96,232,916 1 same

15421-HCC 15421 TG12740 Tpm1 5 prime 23.169 kb chr9 66,920,189 1 same


15421-HCC 15421 TG12740 Aff2 intron 1 disrupt CDS chrX 66,621,567 1 inv




15421-HCC 15421 TG12740 Usp9x 5 prime 164.476 kb chrX 12,585,977 1 inv

15421-HCC 15421 TG12740 Utx intron 4 disrupt CDS chrX 17,790,286 1 same

15891-HCC 15891 TG12740 Hand1 5 prime 5.366 kb chr11 57,651,015 23 inv

15891-HCC 15891 TG12740 Ube2cbp intron 9 disrupt CDS chr9 86,263,728 10 inv

15891-HCC 15891 TG12740 Prdm2 intron 6 disrupt CDS chr4 142,743,914 5 same


15891-HCC 15891 TG12740 Plce1 intron 5 disrupt CDS chr19 38,777,295 4 same

15891-HCC 15891 TG12740 Nrp2 intron 2 disrupt CDS chr1 62,781,398 3 same

15891-HCC 15891 TG12740 Uhrf2 intron 1 disrupt CDS chr19 30,112,192 3 inv

15891-HCC 15891 TG12740 Kcnt2 intron 22 disrupt CDS chr1 142,466,544 2 same


15891-HCC 15891 TG12740 Med13 intron 2 disrupt CDS chr11 86,168,467 2 inv


15891-HCC 15891 TG12740 Pcca intron 2 disrupt CDS chr14 122,961,563 2 inv


15891-HCC 15891 TG12740 Foxj3 intron 1 not disrupt CDS chr4 119,213,576 2 same

15891-HCC 15891 TG12740 Limch1 3 prime 5.220 kb chr5 67,453,618 2 inv


15891-HCC 15891 TG12740 Snd1 intron 15 disrupt CDS chr6 28,712,856 2 inv

15891-HCC 15891 TG12740 Gtf2e2 intron 6 disrupt CDS chr8 34,879,434 2 inv

15891-HCC 15891 TG12740 Bmp5 3 prime 15.431 kb chr9 75,762,255 2 same

15891-HCC 15891 TG12740 Ibtk 5 prime 30.670 kb chr9 85,668,436 2 same

page 27


15891-HCC 15891 TG12740 Tbx18 intron 4 disrupt CDS chr9 87,612,964 2 inv

15891-HCC 15891 TG12740 5830417C01Rik intron 1 disrupt CDS chr1 180,150,830 1 same


15891-HCC 15891 TG12740 Tnfsf18 5 prime 22.603 kb chr1 163,412,818 1 inv

15891-HCC 15891 TG12740 Ctdsp2 5 prime 18.162 kb chr10 126,418,863 1 inv

15891-HCC 15891 TG12740 Gopc intron 7 disrupt CDS chr10 52,064,454 1 same

15891-HCC 15891 TG12740 Hmga2 intron 2 disrupt CDS chr10 119,907,351 1 inv

15891-HCC 15891 TG12740 Msrb3 intron 1 not disrupt CDS chr10 120,329,024 1 inv



15891-HCC 15891 TG12740 Plxnc1 5 prime 86.032 kb chr10 94,493,244 1 same

15891-HCC 15891 TG12740 Snx3 intron 1 disrupt CDS chr10 42,225,073 1 inv

15891-HCC 15891 TG12740 Tpd52l1 5 prime 82.895 kb chr10 31,248,622 1 same

15891-HCC 15891 TG12740 1700081L11Rik intron 4 disrupt CDS chr11 104,220,625 1 inv

15891-HCC 15891 TG12740 D11Wsu99e intron 2 disrupt CDS chr11 113,526,323 1 same

15891-HCC 15891 TG12740 Gemin4 intron 1 disrupt CDS chr11 76,030,206 1 same

15891-HCC 15891 TG12740 Ypel2 intron 2 disrupt CDS chr11 86,781,941 1 inv

15891-HCC 15891 TG12740 Foxn3 intron 3 disrupt CDS chr12 100,564,722 1 same

15891-HCC 15891 TG12740 Rdh11 intron 3 disrupt CDS chr12 80,288,926 1 inv


15891-HCC 15891 TG12740 Bicd2 3 prime 24.390 kb chr13 49,506,784 1 same

15891-HCC 15891 TG12740 Dapk1 intron 6 disrupt CDS chr13 60,819,749 1 same

15891-HCC 15891 TG12740 Exoc2 intron 3 disrupt CDS chr13 31,029,334 1 same

15891-HCC 15891 TG12740 Cacna2d3 intron 2 disrupt CDS chr14 30,515,558 1 inv

15891-HCC 15891 TG12740 Msra intron 6 disrupt CDS chr14 65,008,902 1 inv


15891-HCC 15891 TG12740 Bxdc2 3 prime 23.378 kb chr15 10,392,314 1 same

15891-HCC 15891 TG12740 Eif3h intron 2 disrupt CDS chr15 51,658,580 1 same

15891-HCC 15891 TG12740 Oxr1 intron 14 disrupt CDS chr15 41,689,436 1 inv

15891-HCC 15891 TG12740 Ubr5 intron 1 disrupt CDS chr15 37,986,730 1 same


15891-HCC 15891 TG12740 Rpl39l 3 prime 60.025 kb chr16 10,235,029 1 same

15891-HCC 15891 TG12740 Zbtb20 3 prime 8.128 kb chr16 43,627,311 1 same

15891-HCC 15891 TG12740 D17Wsu92e intron 4 disrupt CDS chr17 27,903,259 1 inv

15891-HCC 15891 TG12740 Atp9b intron 13 disrupt CDS chr18 80,991,820 1 inv

15891-HCC 15891 TG12740 Cxxc1 3 prime 5.172 kb chr18 74,386,317 1 same

15891-HCC 15891 TG12740 Gramd3 5 prime 79.003 kb chr18 56,584,443 1 same

15891-HCC 15891 TG12740 1700011F14Rik 3 prime 21.687 kb chr19 58,649,262 1 inv

15891-HCC 15891 TG12740 Ahnak 3 prime 0.443 kb chr19 9,151,852 1 inv

15891-HCC 15891 TG12740 Ankrd15 3 prime 27.245 kb chr19 25,536,231 1 inv

15891-HCC 15891 TG12740 Fbxl11 intron 13 disrupt CDS chr19 4,329,873 1 inv

15891-HCC 15891 TG12740 Tcf7l2 intron 4 disrupt CDS chr19 55,959,443 1 same

15891-HCC 15891 TG12740 Cacnb2 intron 3 disrupt CDS chr2 14,832,782 1 same

15891-HCC 15891 TG12740 Lcn4 5 prime 19.033 kb chr2 26,545,835 1 inv

page 28


15891-HCC 15891 TG12740 Mbd5 3 prime 79.401 kb chr2 49,251,990 1 same

15891-HCC 15891 TG12740 Ryr3 5 prime 56.682 kb chr2 112,927,170 1 inv


15891-HCC 15891 TG12740 Trpm7 intron 1 disrupt CDS chr2 126,693,586 1 inv

15891-HCC 15891 TG12740 Zc3h8 5 prime 10.576 kb chr2 128,780,332 1 inv

15891-HCC 15891 TG12740 Hnf4g intron 1 disrupt CDS chr3 3,519,097 1 same

15891-HCC 15891 TG12740 Mcoln2 3 prime 3.789 kb chr3 145,862,265 1 inv

15891-HCC 15891 TG12740 Prkacb intron 1 disrupt CDS chr3 146,468,444 1 inv

15891-HCC 15891 TG12740 Pxmp3 intron 4 not disrupt CDS chr3 5,562,907 1 inv

15891-HCC 15891 TG12740 1300002K09Rik 3 prime 29.499 kb chr4 45,929,375 1 inv


15891-HCC 15891 TG12740 Padi1 5 prime 21.114 kb chr4 140,422,807 1 same

15891-HCC 15891 TG12740 Phc2 intron 8 disrupt CDS chr4 128,410,964 1 same

15891-HCC 15891 TG12740 Spen intron 3 disrupt CDS chr4 141,070,985 1 same

15891-HCC 15891 TG12740 Zcchc11 3 prime 4.699 kb chr4 108,236,719 1 inv



15891-HCC 15891 TG12740 Grin2b 5 prime 24.019 kb chr6 136,147,548 1 inv

15891-HCC 15891 TG12740 Mitf 3 prime 81.692 kb chr6 98,050,393 1 inv

15891-HCC 15891 TG12740 Tnpo3 intron 10 disrupt CDS chr6 29,519,014 1 inv

15891-HCC 15891 TG12740 Ctbp2 intron 3 disrupt CDS chr7 140,201,023 1 inv

15891-HCC 15891 TG12740 Ces3 intron 7 disrupt CDS chr8 95,707,412 1 inv

15891-HCC 15891 TG12740 Pard3 intron 22 disrupt CDS chr8 130,102,920 1 same

15891-HCC 15891 TG12740 Acad11 3 prime 63.529 kb chr9 104,093,505 1 same

15891-HCC 15891 TG12740 Aph1c exon 6 not disrupt CDS chr9 66,663,156 1 same

15891-HCC 15891 TG12740 Arih2 intron 7 disrupt CDS chr9 108,517,147 1 inv

15891-HCC 15891 TG12740 Bbs9 intron 18 disrupt CDS chr9 22,561,289 1 inv

15891-HCC 15891 TG12740 Gucy1a2 3 prime 5.860 kb chr9 3,903,202 1 inv

15891-HCC 15891 TG12740 Hmgcll1 intron 3 disrupt CDS chr9 75,914,289 1 same


15891-HCC 15891 TG12740 Rora intron 1 disrupt CDS chr9 68,862,389 1 same

15891-HCC 15891 TG12740 Scg3 5 prime 11.770 kb chr9 75,543,594 1 same

15891-HCC 15891 TG12740 Stt3a intron 6 disrupt CDS chr9 36,560,861 1 same

15891-HCC 15891 TG12740 Trak1 intron 1 disrupt CDS chr9 121,300,172 1 same

15891-HCC 15891 TG12740 Vill intron 11 disrupt CDS chr9 118,973,336 1 same

15891-HCC 15891 TG12740 Mtmr1 intron 1 disrupt CDS chrX 68,619,457 1 same

16016-HCC 16016 TG12775 Rian intron 2 not disrupt CDS chr12 110,849,023 100 same


16016-HCC 16016 TG12775 Cadps2 intron 28 disrupt CDS chr6 23,235,715 10 same

16016-HCC 16016 TG12775 Pcnx intron 8 disrupt CDS chr12 83,038,976 9 same

16016-HCC 16016 TG12775 Rgs6 intron 2 disrupt CDS chr12 83,940,084 9 inv

16016-HCC 16016 TG12775 Rnf144b intron 3 disrupt CDS chr13 47,323,790 7 same

16016-HCC 16016 TG12775 Etfdh intron 8 disrupt CDS chr3 79,416,936 6 same

16016-HCC 16016 TG12775 Mpp5 intron 1 not disrupt CDS chr12 79,881,898 5 inv

page 29




16016-HCC 16016 TG12775 Ern1 intron 1 disrupt CDS chr11 106,332,621 4 inv

16016-HCC 16016 TG12775 Rdh12 3 prime 8.612 kb chr12 80,332,260 4 same

16016-HCC 16016 TG12775 Sptlc2 intron 4 disrupt CDS chr12 88,692,322 4 same


16016-HCC 16016 TG12775 Rab14 3 prime 21.328 kb chr2 35,035,312 4 same

16016-HCC 16016 TG12775 Evi1 intron 6 disrupt CDS chr3 29,867,425 4 inv


16016-HCC 16016 TG12775 Ppt1 exon 9 not disrupt CDS chr4 122,535,347 4 inv

16016-HCC 16016 TG12775 Creb3l2 intron 2 disrupt CDS chr6 37,321,493 4 inv

16016-HCC 16016 TG12775 Creb5 intron 1 disrupt CDS chr6 53,547,303 4 same

16016-HCC 16016 TG12775 Kif9 3 prime 19.455 kb chr9 110,447,133 4 same

16016-HCC 16016 TG12775 Tln2 intron 2 not disrupt CDS chr9 67,315,654 4 inv

16016-HCC 16016 TG12775 Emd 3 prime 5.713 kb chrX 71,508,799 4 same

16016-HCC 16016 TG12775 Gpr50 3 prime 49.039 kb chrX 68,970,303 4 same

16016-HCC 16016 TG12775 Tceb1 intron 3 disrupt CDS chr1 16,635,732 3 inv

16016-HCC 16016 TG12775 Trip12 intron 8 disrupt CDS chr1 84,764,898 3 inv

16016-HCC 16016 TG12775 Psap exon 7 disrupt CDS chr10 59,758,702 3 same

16016-HCC 16016 TG12775 Xpo1 3 prime 95.097 kb chr11 23,292,694 3 same


16016-HCC 16016 TG12775 Nrxn3 intron 14 disrupt CDS chr12 91,049,582 3 same


16016-HCC 16016 TG12775 Skint6 intron 27 disrupt CDS chr4 112,573,150 3 same

16016-HCC 16016 TG12775 Cyp3a57 intron 9 disrupt CDS chr5 146,136,076 3 same



16016-HCC 16016 TG12775 Wdfy3 intron 30 disrupt CDS chr5 102,332,153 3 inv

16016-HCC 16016 TG12775 Atp6v1e1 intron 7 disrupt CDS chr6 120,748,402 3 same

16016-HCC 16016 TG12775 Cttn 5 prime 16.905 kb chr7 151,673,551 3 same


16016-HCC 16016 TG12775 Pik3c2a intron 13 disrupt CDS chr7 123,515,311 3 same

16016-HCC 16016 TG12775 Azi2 5 prime 114.649 kb chr9 117,854,953 3 same




16016-HCC 16016 TG12775 Slco4c1 3 prime 87.095 kb chr1 98,681,653 2 same

16016-HCC 16016 TG12775 Ube2f intron 2 disrupt CDS chr1 93,153,505 2 same

16016-HCC 16016 TG12775 Uchl5 intron 1 disrupt CDS chr1 145,629,075 2 inv

16016-HCC 16016 TG12775 Xcl1 3 prime 47.656 kb chr1 166,817,985 2 inv

16016-HCC 16016 TG12775 D630037F22Rik 3 prime 292.655 kb chr10 55,655,840 2 same

16016-HCC 16016 TG12775 Metap2 intron 2 disrupt CDS chr10 93,351,900 2 same


16016-HCC 16016 TG12775 Evi2b (Nf1) intron 3 not disrupt CDS chr11 79,331,029 2 same

page 30





16016-HCC 16016 TG12775 Ywhaq intron 1 disrupt CDS chr12 21,406,522 2 inv

16016-HCC 16016 TG12775 Ipo11 3 prime 212.640 kb chr13 107,514,355 2 inv

16016-HCC 16016 TG12775 Papd4 intron 8 disrupt CDS chr13 93,941,372 2 same

16016-HCC 16016 TG12775 Eif4b 5 prime 15.341 kb chr15 101,912,263 2 inv


16016-HCC 16016 TG12775 Senp1 intron 14 disrupt CDS chr15 97,878,371 2 same


16016-HCC 16016 TG12775 Arid1b intron 4 disrupt CDS chr17 5,157,359 2 same

16016-HCC 16016 TG12775 Cyp4f39 3 prime 15.812 kb chr17 32,646,077 2 same

16016-HCC 16016 TG12775 Kcnj3 3 prime 85.826 kb chr2 55,533,762 2 inv

16016-HCC 16016 TG12775 Mapkap1 intron 6 disrupt CDS chr2 34,398,724 2 same

16016-HCC 16016 TG12775 Mga intron 17 disrupt CDS chr2 119,774,845 2 inv

16016-HCC 16016 TG12775 Mkks intron 2 not disrupt CDS chr2 136,708,852 2 same

16016-HCC 16016 TG12775 Tas2r134 5 prime 17.155 kb chr2 51,466,772 2 same

16016-HCC 16016 TG12775 Lphn2 intron 5 disrupt CDS chr3 148,516,565 2 same





16016-HCC 16016 TG12775 Frmd4b intron 8 disrupt CDS chr6 97,283,535 2 same

16016-HCC 16016 TG12775 Mitf 5 prime 59.073 kb chr6 97,909,628 2 inv

16016-HCC 16016 TG12775 Apba2 intron 2 not disrupt CDS chr7 71,770,476 2 same

16016-HCC 16016 TG12775 Cpxm2 intron 1 disrupt CDS chr7 139,344,253 2 inv

16016-HCC 16016 TG12775 Rab6ip1 intron 1 disrupt CDS chr7 117,099,285 2 same


16016-HCC 16016 TG12775 St3gal4 intron 9 disrupt CDS chr9 34,856,107 2 inv

16016-HCC 16016 TG12775 Bat2d intron 24 disrupt CDS chr1 164,614,992 1 inv

16016-HCC 16016 TG12775 Camsap1l1 intron 2 disrupt CDS chr1 138,216,297 1 same

16016-HCC 16016 TG12775 Klf7 5 prime 45.320 kb chr1 64,213,283 1 inv


16016-HCC 16016 TG12775 Slco5a1 intron 1 disrupt CDS chr1 12,968,540 1 inv

16016-HCC 16016 TG12775 Thsd7b intron 7 disrupt CDS chr1 131,646,622 1 same

16016-HCC 16016 TG12775 Lims1 intron 1 disrupt CDS chr10 57,830,335 1 same


16016-HCC 16016 TG12775 Samd5 3 prime 62.434 kb chr10 9,332,572 1 inv

16016-HCC 16016 TG12775 Ccdc46 intron 1 not disrupt CDS chr11 108,291,688 1 same

16016-HCC 16016 TG12775 G6pc3 3 prime 0.877 kb chr11 102,056,273 1 same

16016-HCC 16016 TG12775 Grb10 intron 4 disrupt CDS chr11 11,864,084 1 same


16016-HCC 16016 TG12775 Mbtd1 intron 1 not disrupt CDS chr11 93,763,069 1 inv


page 31


16016-HCC 16016 TG12775 Spnb2 intron 2 disrupt CDS chr11 30,054,973 1 inv

16016-HCC 16016 TG12775 Tanc2 intron 1 not disrupt CDS chr11 105,482,723 1 inv

16016-HCC 16016 TG12775 Tanc2 intron 18 disrupt CDS chr11 105,766,879 1 same

16016-HCC 16016 TG12775 Taok1 intron 1 not disrupt CDS chr11 77,413,471 1 same

16016-HCC 16016 TG12775 Ywhae intron 1 disrupt CDS chr11 75,561,399 1 same

16016-HCC 16016 TG12775 4933426M11Rik intron 1 not disrupt CDS chr12 81,916,226 1 inv



16016-HCC 16016 TG12775 Gphn intron 4 disrupt CDS chr12 79,552,328 1 same





16016-HCC 16016 TG12775 Nrxn3 intron 15 disrupt CDS chr12 91,361,019 1 inv

16016-HCC 16016 TG12775 Nrxn3 3 prime 69.441 kb chr12 91,640,941 1 inv

16016-HCC 16016 TG12775 Pcnx intron 2 disrupt CDS chr12 83,005,304 1 inv

16016-HCC 16016 TG12775 Prkcm 5 prime 19.079 kb chr12 51,769,289 1 same

16016-HCC 16016 TG12775 Sfrs5 3 prime 0.587 kb chr12 82,052,081 1 inv

16016-HCC 16016 TG12775 Synj2bp intron 1 disrupt CDS chr12 82,612,133 1 inv

16016-HCC 16016 TG12775 Vti1b intron 3 disrupt CDS chr12 80,264,031 1 same

16016-HCC 16016 TG12775 Akr1c14 exon 7 disrupt CDS chr13 4,080,283 1 same

16016-HCC 16016 TG12775 Aoah 3 prime 21.101 kb chr13 21,137,222 1 inv

16016-HCC 16016 TG12775 Gpbp1 3 prime 65.142 kb chr13 112,214,905 1 inv


16016-HCC 16016 TG12775 Mef2c 5 prime 211.965 kb chr13 83,590,983 1 inv

16016-HCC 16016 TG12775 Ap3m1 exon 9 not disrupt CDS chr14 21,854,256 1 same

16016-HCC 16016 TG12775 Arhgef3 intron 1 disrupt CDS chr14 28,067,495 1 same

16016-HCC 16016 TG12775 Cnih 5 prime 12.868 kb chr14 47,420,881 1 same






16016-HCC 16016 TG12775 Nrg3 intron 1 disrupt CDS chr14 40,189,035 1 same

16016-HCC 16016 TG12775 Tsc22d1 5 prime 118.199 kb chr14 76,789,367 1 same

16016-HCC 16016 TG12775 Azin1 5 prime 18.712 kb chr15 38,467,733 1 inv

16016-HCC 16016 TG12775 Tmem117 intron 6 disrupt CDS chr15 94,897,584 1 inv

16016-HCC 16016 TG12775 App intron 7 disrupt CDS chr16 85,028,352 1 inv

16016-HCC 16016 TG12775 Clec16a intron 1 disrupt CDS chr16 10,552,992 1 inv


16016-HCC 16016 TG12775 Nrxn1 intron 16 disrupt CDS chr17 90,957,451 1 inv

16016-HCC 16016 TG12775 Pcaf intron 3 disrupt CDS chr17 53,766,250 1 inv

16016-HCC 16016 TG12775 Tacstd1 5 prime 89.506 kb chr17 87,960,961 1 same

16016-HCC 16016 TG12775 Mex3c 3 prime 44.704 kb chr18 73,796,936 1 same

page 32




16016-HCC 16016 TG12775 Pard6g intron 2 disrupt CDS chr18 80,296,704 1 inv

16016-HCC 16016 TG12775 Ptpn2 intron 1 disrupt CDS chr18 67,878,514 1 same

16016-HCC 16016 TG12775 Cpeb3 intron 5 disrupt CDS chr19 37,174,328 1 inv

16016-HCC 16016 TG12775 Slit1 intron 18 disrupt CDS chr19 41,711,477 1 inv

16016-HCC 16016 TG12775 2210009G21Rik intron 4 disrupt CDS chr2 136,851,554 1 same


16016-HCC 16016 TG12775 Arhgap15 intron 13 disrupt CDS chr2 44,238,186 1 same

16016-HCC 16016 TG12775 Baz2b intron 2 not disrupt CDS chr2 59,890,498 1 inv


16016-HCC 16016 TG12775 Epc2 5 prime 123.062 kb chr2 49,284,067 1 same

16016-HCC 16016 TG12775 Gtdc1 intron 3 disrupt CDS chr2 44,667,977 1 inv

16016-HCC 16016 TG12775 Npepl1 3 prime 46.734 kb chr2 173,994,937 1 same

16016-HCC 16016 TG12775 Prei4 intron 7 disrupt CDS chr2 132,376,744 1 inv

16016-HCC 16016 TG12775 Rabgap1 intron 11 disrupt CDS chr2 37,355,486 1 same

16016-HCC 16016 TG12775 Snx5 exon 13 not disrupt CDS chr2 144,076,425 1 inv

16016-HCC 16016 TG12775 Thnsl1 3 prime 12.843 kb chr2 21,149,479 1 inv

16016-HCC 16016 TG12775 Ywhab intron 1 not disrupt CDS chr2 163,825,005 1 same

16016-HCC 16016 TG12775 D930015E06Rik intron 3 disrupt CDS chr3 83,776,534 1 inv



16016-HCC 16016 TG12775 Vmn2r2 5 prime 15.462 kb chr3 63,956,864 1 inv

16016-HCC 16016 TG12775 Zranb2 intron 4 disrupt CDS chr3 157,200,643 1 same



16016-HCC 16016 TG12775 Rab2 intron 6 disrupt CDS chr4 8,513,401 1 inv

16016-HCC 16016 TG12775 Rnf38 intron 9 disrupt CDS chr4 44,145,415 1 same


16016-HCC 16016 TG12775 Atf7ip intron 2 disrupt CDS chr6 136,511,115 1 inv

16016-HCC 16016 TG12775 Ccdc77 5 prime 45.801 kb chr6 120,353,179 1 same

16016-HCC 16016 TG12775 Dusp16 intron 4 disrupt CDS chr6 134,680,949 1 inv

16016-HCC 16016 TG12775 Exoc4 intron 11 disrupt CDS chr6 33,711,270 1 same

16016-HCC 16016 TG12775 Kcmf1 intron 1 disrupt CDS chr6 72,816,855 1 same




16016-HCC 16016 TG12775 Pdzrn3 intron 3 disrupt CDS chr6 101,219,523 1 inv

16016-HCC 16016 TG12775 Clns1a intron 2 disrupt CDS chr7 104,859,774 1 inv

16016-HCC 16016 TG12775 l7Rn6 intron 1 disrupt CDS chr7 97,086,124 1 inv

16016-HCC 16016 TG12775 Mef2a intron 2 not disrupt CDS chr7 74,465,846 1 inv


16016-HCC 16016 TG12775 Pde3b 5 prime 123.615 kb chr7 121,557,836 1 same

16016-HCC 16016 TG12775 Pwwp2b 3 prime 72.224 kb chr7 146,525,376 1 same

page 33


16016-HCC 16016 TG12775 Zfp619 3 prime 63.666 kb chr7 46,859,451 1 inv



16016-HCC 16016 TG12775 Psd3 5 prime 32.713 kb chr8 70,531,186 1 same

16016-HCC 16016 TG12775 Tusc3 5 prime 263.027 kb chr8 39,987,441 1 same

16016-HCC 16016 TG12775 Tusc3 intron 2 disrupt CDS chr8 40,122,160 1 same

16016-HCC 16016 TG12775 Itga9 intron 15 disrupt CDS chr9 118,627,293 1 same

16016-HCC 16016 TG12775 Med17 exon 12 not disrupt CDS chr9 15,065,832 1 same



16016-HCC 16016 TG12775 Smad6 intron 3 disrupt CDS chr9 63,848,851 1 same

16016-HCC 16016 TG12775 Mycs 5 prime 32.071 kb chrX 5,078,213 1 inv


16018-HCC 16018 TG12775 Rsf1 intron 4 disrupt CDS chr7 104,790,988 35 inv

16018-HCC 16018 TG12775 Nrxn3 intron 14 disrupt CDS chr12 90,820,270 6 same

16018-HCC 16018 TG12775 Rai14 intron 12 disrupt CDS chr15 10,514,054 6 inv

16018-HCC 16018 TG12775 Gpr156 3 prime 54.458 kb chr16 38,062,073 6 same

16018-HCC 16018 TG12775 Malt1 3 prime 61.074 kb chr18 65,699,520 6 inv


16018-HCC 16018 TG12775 Ptk2b intron 1 not disrupt CDS chr14 66,846,884 5 same

16018-HCC 16018 TG12775 Ptprm intron 17 disrupt CDS chr17 67,119,841 5 inv



16018-HCC 16018 TG12775 Mars2 3 prime 0.758 kb chr1 55,297,660 4 same

16018-HCC 16018 TG12775 Dnahc11 intron 57 disrupt CDS chr12 119,217,488 4 inv

16018-HCC 16018 TG12775 Dcp1a intron 3 disrupt CDS chr14 31,302,311 4 inv

16018-HCC 16018 TG12775 Gpc5 intron 7 disrupt CDS chr14 116,225,867 4 inv

16018-HCC 16018 TG12775 Wapal intron 2 disrupt CDS chr14 35,498,315 4 inv

16018-HCC 16018 TG12775 Pip5k1b intron 1 not disrupt CDS chr19 24,579,278 4 same


16018-HCC 16018 TG12775 Gpr56 intron 11 disrupt CDS chr8 97,534,127 4 inv


16018-HCC 16018 TG12775 Rnf111 intron 2 not disrupt CDS chr9 70,333,329 4 same


16018-HCC 16018 TG12775 Il18rap 3 prime 0.230 kb chr1 40,606,372 3 inv


16018-HCC 16018 TG12775 Sec63 intron 8 disrupt CDS chr10 42,520,874 3 same


16018-HCC 16018 TG12775 Calm1 intron 2 disrupt CDS chr12 101,441,323 3 same


16018-HCC 16018 TG12775 Pum2 intron 2 disrupt CDS chr12 8,705,232 3 same

16018-HCC 16018 TG12775 Rgs6 intron 2 disrupt CDS chr12 84,051,143 3 same

16018-HCC 16018 TG12775 Arid1a intron 4 disrupt CDS chr4 133,253,616 3 same


page 34



16018-HCC 16018 TG12775 Gnai1 intron 1 disrupt CDS chr5 17,817,672 3 same

16018-HCC 16018 TG12775 Lphn3 intron 2 not disrupt CDS chr5 81,498,771 3 same

16018-HCC 16018 TG12775 Slc41a3 3 prime 60.553 kb chr6 90,656,959 3 inv

16018-HCC 16018 TG12775 Gnao1 intron 2 disrupt CDS chr8 96,387,302 3 same


16018-HCC 16018 TG12775 Rab21 3 prime 29.933 kb chr10 114,722,714 2 inv


16018-HCC 16018 TG12775 Frmd6 5 prime 139.032 kb chr12 71,864,189 2 inv

16018-HCC 16018 TG12775 Pcnx intron 28 disrupt CDS chr12 83,086,162 2 inv

16018-HCC 16018 TG12775 Sfrs5 3 prime 0.068 kb chr12 82,051,562 2 inv

16018-HCC 16018 TG12775 Smek1 intron 9 disrupt CDS chr12 102,288,055 2 inv

16018-HCC 16018 TG12775 Adarb2 3 prime 42.375 kb chr13 8,801,929 2 same


16018-HCC 16018 TG12775 Klf12 intron 5 disrupt CDS chr14 100,326,719 2 inv


16018-HCC 16018 TG12775 Adcy8 intron 2 disrupt CDS chr15 64,673,173 2 same

16018-HCC 16018 TG12775 Ehhadh 5 prime 41.267 kb chr16 21,829,136 2 same

16018-HCC 16018 TG12775 Grik1 3 prime 408.555 kb chr16 87,881,927 2 inv

16018-HCC 16018 TG12775 Lpp intron 7 disrupt CDS chr16 24,683,319 2 same

16018-HCC 16018 TG12775 Mapk1 intron 6 disrupt CDS chr16 17,029,752 2 inv

16018-HCC 16018 TG12775 Birc6 intron 8 disrupt CDS chr17 74,975,826 2 inv


16018-HCC 16018 TG12775 Tmem178 3 prime 95.825 kb chr17 81,496,981 2 same

16018-HCC 16018 TG12775 9330158F14Rik 5 prime 44.248 kb chr2 65,246,331 2 inv




16018-HCC 16018 TG12775 Ptprj intron 1 disrupt CDS chr2 90,351,402 2 same


16018-HCC 16018 TG12775 Ubap2l intron 13 disrupt CDS chr3 89,826,934 2 same


16018-HCC 16018 TG12775 Foxj3 intron 1 not disrupt CDS chr4 119,227,099 2 inv


16018-HCC 16018 TG12775 Atxn2 intron 5 disrupt CDS chr5 122,201,925 2 inv


16018-HCC 16018 TG12775 Slc4a4 intron 1 not disrupt CDS chr5 89,359,413 2 inv



16018-HCC 16018 TG12775 Rpo1-4 intron 25 disrupt CDS chr6 71,916,854 2 inv

16018-HCC 16018 TG12775 Wnt5b intron 1 not disrupt CDS chr6 119,433,398 2 same

16018-HCC 16018 TG12775 Bag3 3 prime 39.778 kb chr7 135,730,269 2 inv

16018-HCC 16018 TG12775 Agrp intron 3 disrupt CDS chr8 108,091,235 2 inv

16018-HCC 16018 TG12775 Snx25 intron 3 disrupt CDS chr8 47,175,420 2 same

page 35


16018-HCC 16018 TG12775 Sorbs2 intron 1 not disrupt CDS chr8 46,694,571 2 inv

16018-HCC 16018 TG12775 Zdhhc2 5 prime 95.096 kb chr8 41,475,100 2 inv


16018-HCC 16018 TG12775 Tsc22d3 3 prime 29.026 kb chrX 137,048,698 2 same

16018-HCC 16018 TG12775 Ccnt2 intron 2 disrupt CDS chr1 129,685,270 1 same

16018-HCC 16018 TG12775 Iars2 3 prime 104.041 kb chr1 187,049,239 1 inv

16018-HCC 16018 TG12775 Mael intron 6 disrupt CDS chr1 168,156,418 1 inv



16018-HCC 16018 TG12775 Phf3 intron 1 disrupt CDS chr1 30,906,970 1 same

16018-HCC 16018 TG12775 Fyn intron 12 disrupt CDS chr10 39,254,423 1 inv

16018-HCC 16018 TG12775 Fyn 3 prime 31.691 kb chr10 39,316,871 1 same

16018-HCC 16018 TG12775 Grip1 intron 1 disrupt CDS chr10 119,272,811 1 inv

16018-HCC 16018 TG12775 Lace1 intron 5 disrupt CDS chr10 42,136,920 1 inv




16018-HCC 16018 TG12775 Ccl9 3 prime 17.293 kb chr11 83,374,845 1 same

16018-HCC 16018 TG12775 Rtn4 intron 2 disrupt CDS chr11 29,633,945 1 same

16018-HCC 16018 TG12775 4930579E17Rik intron 6 disrupt CDS chr12 37,242,577 1 same

16018-HCC 16018 TG12775 4933426M11Rik intron 2 disrupt CDS chr12 81,947,807 1 same

16018-HCC 16018 TG12775 Arhgap5 5 prime 59.754 kb chr12 53,609,084 1 same

16018-HCC 16018 TG12775 Daam1 intron 1 not disrupt CDS chr12 72,965,830 1 inv

16018-HCC 16018 TG12775 Erh 5 prime 24.394 kb chr12 81,769,171 1 inv

16018-HCC 16018 TG12775 Foxn3 intron 3 disrupt CDS chr12 100,554,020 1 inv



16018-HCC 16018 TG12775 Nrxn3 intron 2 not disrupt CDS chr12 90,232,091 1 inv

16018-HCC 16018 TG12775 Ppp2r5c 5 prime 88.266 kb chr12 111,721,634 1 inv

16018-HCC 16018 TG12775 Rdh12 intron 4 disrupt CDS chr12 80,314,307 1 same

16018-HCC 16018 TG12775 Sp4 5 prime 1.683 kb chr12 119,541,525 1 same

16018-HCC 16018 TG12775 Wdr22 intron 6 disrupt CDS chr12 81,477,361 1 inv


16018-HCC 16018 TG12775 9330134C04Rik intron 2 disrupt CDS chr13 63,983,120 1 same

16018-HCC 16018 TG12775 Esm1 3 prime 79.150 kb chr13 114,087,462 1 same


16018-HCC 16018 TG12775 Vps41 intron 4 disrupt CDS chr13 18,852,212 1 inv

16018-HCC 16018 TG12775 Dcp1a intron 3 disrupt CDS chr14 31,304,211 1 same

16018-HCC 16018 TG12775 Grid1 intron 2 disrupt CDS chr14 35,689,550 1 same

16018-HCC 16018 TG12775 Ints6 intron 4 disrupt CDS chr14 63,337,295 1 same

16018-HCC 16018 TG12775 Kcnrg 3 prime 33.089 kb chr14 62,264,759 1 same

16018-HCC 16018 TG12775 Klf5 3 prime 6.191 kb chr14 99,718,819 1 inv



page 36


16018-HCC 16018 TG12775 Sucla2 3 prime 5.652 kb chr14 74,001,601 1 same

16018-HCC 16018 TG12775 Cbx6 intron 4 disrupt CDS chr15 79,660,291 1 same

16018-HCC 16018 TG12775 Mlc1 intron 10 disrupt CDS chr15 88,789,691 1 inv

16018-HCC 16018 TG12775 Fgf12 intron 2 disrupt CDS chr16 28,562,700 1 same


16018-HCC 16018 TG12775 Fert2 intron 11 disrupt CDS chr17 64,447,757 1 inv

16018-HCC 16018 TG12775 Mro 3 prime 43.580 kb chr18 74,082,368 1 inv



16018-HCC 16018 TG12775 Tle4 3 prime 168.481 kb chr19 14,503,992 1 same

16018-HCC 16018 TG12775 Tmem2 3 prime 81.595 kb chr19 22,014,412 1 same

16018-HCC 16018 TG12775 Etl4 intron 3 disrupt CDS chr2 20,525,957 1 same

16018-HCC 16018 TG12775 Gm826 intron 1 disrupt CDS chr2 160,152,793 1 same



16018-HCC 16018 TG12775 Spag4l 5 prime 1.753 kb chr2 153,698,573 1 same

16018-HCC 16018 TG12775 Dnajc19 intron 5 disrupt CDS chr3 33,957,351 1 inv

16018-HCC 16018 TG12775 Dpyd intron 14 disrupt CDS chr3 118,777,982 1 same

16018-HCC 16018 TG12775 Foxo1 intron 1 disrupt CDS chr3 52,117,655 1 inv

16018-HCC 16018 TG12775 Lxn intron 4 disrupt CDS chr3 67,264,376 1 same


16018-HCC 16018 TG12775 Tspan5 intron 1 disrupt CDS chr3 138,415,850 1 inv

16018-HCC 16018 TG12775 Arid1a intron 4 disrupt CDS chr4 133,260,153 1 inv

16018-HCC 16018 TG12775 Guca2b 5 prime 88.868 kb chr4 119,420,418 1 inv

16018-HCC 16018 TG12775 Ube4b intron 6 disrupt CDS chr4 148,749,609 1 same

16018-HCC 16018 TG12775 G3bp2 intron 7 disrupt CDS chr5 92,493,148 1 inv

16018-HCC 16018 TG12775 Gc 3 prime 77.076 kb chr5 89,809,714 1 inv

16018-HCC 16018 TG12775 Gtf2i intron 29 disrupt CDS chr5 134,718,216 1 same

16018-HCC 16018 TG12775 Gtf2i intron 1 not disrupt CDS chr5 134,778,218 1 same


16018-HCC 16018 TG12775 Sema3e intron 1 disrupt CDS chr5 14,128,781 1 inv

16018-HCC 16018 TG12775 Steap4 3 prime 15.272 kb chr5 7,997,485 1 inv

16018-HCC 16018 TG12775 Sult1b1 intron 4 disrupt CDS chr5 87,950,891 1 inv

16018-HCC 16018 TG12775 Tbc1d14 intron 1 not disrupt CDS chr5 36,918,503 1 inv

16018-HCC 16018 TG12775 Ugt2a3 3 prime 13.682 kb chr5 87,752,519 1 same

16018-HCC 16018 TG12775 Ugt2b37 5 prime 1.375 kb chr5 87,685,188 1 same

16018-HCC 16018 TG12775 Zfyve28 intron 1 disrupt CDS chr5 34,624,061 1 inv

16018-HCC 16018 TG12775 Eefsec intron 4 disrupt CDS chr6 88,261,518 1 same



16018-HCC 16018 TG12775 Tmem16b intron 20 disrupt CDS chr6 125,962,363 1 same

16018-HCC 16018 TG12775 Gm484 3 prime 0.721 kb chr7 52,950,645 1 same

16018-HCC 16018 TG12775 Nup62 3 prime 3.667 kb chr7 52,089,843 1 same


page 37


16018-HCC 16018 TG12775 Rab38 intron 1 disrupt CDS chr7 95,582,716 1 inv

16018-HCC 16018 TG12775 Rsf1 intron 5 disrupt CDS chr7 104,807,392 1 inv

16018-HCC 16018 TG12775 Ikbkb intron 13 disrupt CDS chr8 23,779,744 1 same

16018-HCC 16018 TG12775 Maf 3 prime 54.143 kb chr8 118,176,651 1 same

16018-HCC 16018 TG12775 Acat1 intron 5 disrupt CDS chr9 53,401,142 1 same

16018-HCC 16018 TG12775 C230081A13Rik intron 6 disrupt CDS chr9 56,060,070 1 same

16018-HCC 16018 TG12775 Dapk2 intron 2 disrupt CDS chr9 66,037,828 1 same

16018-HCC 16018 TG12775 Tcf12 intron 5 disrupt CDS chr9 71,820,433 1 inv


16018-HCC 16018 TG12775 Dmd intron 17 disrupt CDS chrX 81,000,094 1 same

16018-HCC 16018 TG12775 Odz1 intron 4 disrupt CDS chrX 40,415,749 1 inv


16204-HCC 16204 TG12740 Cdc25a 3 prime 23.768 kb chr9 109,820,162 10 same

16204-HCC 16204 TG12740 Rasgrf1 intron 8 disrupt CDS chr9 89,867,523 8 same


16204-HCC 16204 TG12740 Myo5a intron 33 disrupt CDS chr9 75,046,519 5 same

16204-HCC 16204 TG12740 Gcg 5 prime 5.045 kb chr2 62,326,755 4 inv

16204-HCC 16204 TG12740 Cnot6l intron 11 disrupt CDS chr5 96,507,390 4 inv

16204-HCC 16204 TG12740 Srpk2 intron 1 disrupt CDS chr5 23,084,199 4 inv


16204-HCC 16204 TG12740 4921528I01Rik intron 5 disrupt CDS chr18 22,297,456 3 inv

16204-HCC 16204 TG12740 Elf2 5 prime 4.588 kb chr3 51,134,497 3 inv

16204-HCC 16204 TG12740 Abcg4 5 prime 5.394 kb chr9 44,101,721 3 inv





16204-HCC 16204 TG12740 Epb4.1l2 intron 12 disrupt CDS chr10 25,210,310 2 same

16204-HCC 16204 TG12740 Atad2b intron 5 disrupt CDS chr12 4,949,066 2 inv

16204-HCC 16204 TG12740 Ppp2r5e intron 2 disrupt CDS chr12 76,635,959 2 inv

16204-HCC 16204 TG12740 Ankrd28 intron 18 disrupt CDS chr14 32,526,347 2 inv

16204-HCC 16204 TG12740 Dock5 intron 1 disrupt CDS chr14 68,544,854 2 inv

16204-HCC 16204 TG12740 Fhit intron 4 disrupt CDS chr14 10,793,337 2 inv


16204-HCC 16204 TG12740 Pacrg intron 1 disrupt CDS chr17 11,007,256 2 inv


16204-HCC 16204 TG12740 Kcnip4 intron 1 disrupt CDS chr5 48,893,984 2 inv

16204-HCC 16204 TG12740 Ldb2 intron 5 disrupt CDS chr5 44,919,050 2 same

16204-HCC 16204 TG12740 Skap2 intron 3 disrupt CDS chr6 51,950,625 2 inv

16204-HCC 16204 TG12740 Zc3hav1 intron 6 disrupt CDS chr6 38,277,541 2 same


16204-HCC 16204 TG12740 Fbxl22 3 prime 94.369 kb chr9 66,268,014 2 inv

16204-HCC 16204 TG12740 Mtap4 intron 2 disrupt CDS chr9 109,887,891 2 same


page 38



16204-HCC 16204 TG12740 Senp6 intron 5 disrupt CDS chr9 79,950,721 2 same

16204-HCC 16204 TG12740 Snx14 intron 1 disrupt CDS chr9 88,322,599 2 inv

16204-HCC 16204 TG12740 Arl4c 3 prime 32.740 kb chr1 90,566,026 1 inv

16204-HCC 16204 TG12740 Brp44 intron 3 disrupt CDS chr1 167,408,945 1 inv

16204-HCC 16204 TG12740 Kcnb2 intron 1 disrupt CDS chr1 15,658,735 1 same

16204-HCC 16204 TG12740 Ly96 3 prime 83.890 kb chr1 16,783,570 1 inv



16204-HCC 16204 TG12740 Rabgap1l intron 12 disrupt CDS chr1 162,559,000 1 inv

16204-HCC 16204 TG12740 Ascl1 3 prime 67.003 kb chr10 86,889,402 1 inv

16204-HCC 16204 TG12740 Ctnna3 intron 13 disrupt CDS chr10 64,210,798 1 same

16204-HCC 16204 TG12740 Nrbf2 5 prime 10.590 kb chr10 66,758,619 1 same

16204-HCC 16204 TG12740 Cnot8 5 prime 77.274 kb chr11 57,854,822 1 same


16204-HCC 16204 TG12740 Pitpnc1 intron 1 disrupt CDS chr11 107,305,820 1 inv


16204-HCC 16204 TG12740 Vezf1 intron 1 disrupt CDS chr11 87,885,548 1 inv

16204-HCC 16204 TG12740 Arl4a exon 2 disrupt CDS chr12 40,763,105 1 inv

16204-HCC 16204 TG12740 Mthfd1 intron 2 disrupt CDS chr12 77,377,184 1 same




16204-HCC 16204 TG12740 Sp4 intron 5 disrupt CDS chr12 119,490,133 1 same

16204-HCC 16204 TG12740 Zfyve1 5 prime 48.421 kb chr12 84,986,518 1 inv

16204-HCC 16204 TG12740 2010111I01Rik intron 13 disrupt CDS chr13 63,386,309 1 same

16204-HCC 16204 TG12740 Dip2c intron 1 disrupt CDS chr13 9,284,318 1 inv

16204-HCC 16204 TG12740 Mctp1 intron 1 not disrupt CDS chr13 76,763,206 1 same

16204-HCC 16204 TG12740 Mef2c 3 prime 89.093 kb chr13 83,892,041 1 same



16204-HCC 16204 TG12740 Rreb1 intron 1 not disrupt CDS chr13 37,970,430 1 inv

16204-HCC 16204 TG12740 Spin1 intron 1 not disrupt CDS chr13 51,200,293 1 same

16204-HCC 16204 TG12740 Fhit intron 4 disrupt CDS chr14 11,251,093 1 same

16204-HCC 16204 TG12740 Flnb intron 9 disrupt CDS chr14 8,720,668 1 inv

16204-HCC 16204 TG12740 Kcnrg 3 prime 37.739 kb chr14 62,269,409 1 inv

16204-HCC 16204 TG12740 Msra intron 7 disrupt CDS chr14 64,926,150 1 inv



16204-HCC 16204 TG12740 Pcca intron 22 disrupt CDS chr14 123,284,079 1 inv

16204-HCC 16204 TG12740 Plau 3 prime 68.776 kb chr14 21,731,386 1 same

16204-HCC 16204 TG12740 Ptk2b intron 2 disrupt CDS chr14 66,815,414 1 inv

16204-HCC 16204 TG12740 Rbm26 5 prime 44.692 kb chr14 105,621,236 1 inv

16204-HCC 16204 TG12740 Zmiz1 intron 4 disrupt CDS chr14 26,392,902 1 inv

page 39



16204-HCC 16204 TG12740 Sepp1 intron 1 not disrupt CDS chr15 3,223,145 1 inv

16204-HCC 16204 TG12740 Brwd1 intron 4 disrupt CDS chr16 96,291,990 1 same

16204-HCC 16204 TG12740 Cadm2 intron 1 disrupt CDS chr16 67,250,211 1 same

16204-HCC 16204 TG12740 Gbe1 3 prime 71.216 kb chr16 70,641,177 1 same

16204-HCC 16204 TG12740 Nrip1 intron 1 not disrupt CDS chr16 76,365,148 1 same

16204-HCC 16204 TG12740 Opa1 intron 5 disrupt CDS chr16 29,594,192 1 inv



16204-HCC 16204 TG12740 Ppard intron 3 disrupt CDS chr17 28,423,574 1 same

16204-HCC 16204 TG12740 Supt3h intron 3 disrupt CDS chr17 45,087,380 1 inv

16204-HCC 16204 TG12740 Synj2 intron 4 disrupt CDS chr17 5,997,312 1 inv

16204-HCC 16204 TG12740 Armc4 intron 18 disrupt CDS chr18 7,161,536 1 same


16204-HCC 16204 TG12740 Ostf1 intron 1 disrupt CDS chr19 18,680,166 1 inv

16204-HCC 16204 TG12740 Pank1 intron 2 disrupt CDS chr19 34,909,294 1 same

16204-HCC 16204 TG12740 Smarca2 intron 27 disrupt CDS chr19 26,811,053 1 same

16204-HCC 16204 TG12740 2310003L22Rik intron 10 disrupt CDS chr2 140,029,238 1 inv


16204-HCC 16204 TG12740 5430407P10Rik intron 2 disrupt CDS chr2 6,025,995 1 inv

16204-HCC 16204 TG12740 Creb3l1 5 prime 14.803 kb chr2 91,879,130 1 inv

16204-HCC 16204 TG12740 Foxa2 exon 3 not disrupt CDS chr2 147,868,637 1 same




16204-HCC 16204 TG12740 Optn intron 10 disrupt CDS chr2 4,953,394 1 inv

16204-HCC 16204 TG12740 Rab14 intron 1 not disrupt CDS chr2 35,049,377 1 same

16204-HCC 16204 TG12740 Rrbp1 intron 2 disrupt CDS chr2 143,801,562 1 same

16204-HCC 16204 TG12740 Sestd1 intron 3 disrupt CDS chr2 77,074,082 1 same

16204-HCC 16204 TG12740 Tgm3 5 prime 75.031 kb chr2 129,801,104 1 inv

16204-HCC 16204 TG12740 Ttc17 intron 19 disrupt CDS chr2 94,168,597 1 same

16204-HCC 16204 TG12740 Zbtb46 intron 2 disrupt CDS chr2 181,154,079 1 same

16204-HCC 16204 TG12740 Zfp804a intron 1 disrupt CDS chr2 81,909,310 1 same

16204-HCC 16204 TG12740 Extl2 intron 2 disrupt CDS chr3 115,722,838 1 inv

16204-HCC 16204 TG12740 Fpgt intron 3 disrupt CDS chr3 154,751,054 1 inv

16204-HCC 16204 TG12740 Hipk1 intron 14 disrupt CDS chr3 103,549,954 1 same

16204-HCC 16204 TG12740 Lphn2 intron 16 disrupt CDS chr3 148,496,497 1 same

16204-HCC 16204 TG12740 Pde4dip intron 1 disrupt CDS chr3 97,567,669 1 inv

16204-HCC 16204 TG12740 Slc7a14 intron 1 not disrupt CDS chr3 31,205,155 1 inv

16204-HCC 16204 TG12740 Tspan2 5 prime 102.690 kb chr3 102,473,525 1 same

16204-HCC 16204 TG12740 1700012H17Rik 5 prime 176.110 kb chr4 5,550,981 1 same

16204-HCC 16204 TG12740 Abca1 intron 6 disrupt CDS chr4 53,120,775 1 same

16204-HCC 16204 TG12740 Aco1 3 prime 3.206 kb chr4 40,149,248 1 inv

16204-HCC 16204 TG12740 Aof2 intron 4 disrupt CDS chr4 136,129,242 1 inv

page 40


16204-HCC 16204 TG12740 BC057079 intron 5 disrupt CDS chr4 87,808,381 1 inv

16204-HCC 16204 TG12740 Dmrta1 3 prime 86.574 kb chr4 89,448,031 1 same

16204-HCC 16204 TG12740 E130309F12Rik 5 prime 299.539 kb chr4 49,053,594 1 inv

16204-HCC 16204 TG12740 Efcbp1 intron 5 disrupt CDS chr4 14,949,135 1 same

16204-HCC 16204 TG12740 Grik3 3 prime 20.741 kb chr4 125,406,333 1 same

16204-HCC 16204 TG12740 Ift74 intron 19 disrupt CDS chr4 94,358,533 1 same





16204-HCC 16204 TG12740 Ncor2 intron 2 not disrupt CDS chr5 125,605,708 1 same

16204-HCC 16204 TG12740 Sept10 intron 8 disrupt CDS chr5 93,594,993 1 same

16204-HCC 16204 TG12740 Steap2 intron 5 disrupt CDS chr5 5,674,324 1 same


16204-HCC 16204 TG12740 Abcc9 5 prime 11.390 kb chr6 142,662,184 1 same

16204-HCC 16204 TG12740 Arhgap25 intron 4 disrupt CDS chr6 87,434,798 1 inv

16204-HCC 16204 TG12740 Loh12cr1 intron 2 disrupt CDS chr6 134,613,975 1 inv


16204-HCC 16204 TG12740 Tgoln1 exon 4 not disrupt CDS chr6 72,559,287 1 same

16204-HCC 16204 TG12740 Wnt5b intron 1 not disrupt CDS chr6 119,437,543 1 same

16204-HCC 16204 TG12740 Mef2a intron 7 disrupt CDS chr7 74,403,472 1 same

16204-HCC 16204 TG12740 Myod1 5 prime 29.398 kb chr7 53,605,067 1 same



16204-HCC 16204 TG12740 Pik3c2a intron 1 not disrupt CDS chr7 123,584,706 1 same

16204-HCC 16204 TG12740 Ccdc111 intron 6 disrupt CDS chr8 47,683,654 1 inv





16204-HCC 16204 TG12740 Psd3 5 prime 60.632 kb chr8 70,559,105 1 same

16204-HCC 16204 TG12740 Setd6 3 prime 45.043 kb chr8 98,287,947 1 inv

16204-HCC 16204 TG12740 Azi2 intron 6 disrupt CDS chr9 117,967,169 1 inv

16204-HCC 16204 TG12740 Dcun1d5 intron 4 disrupt CDS chr9 7,195,464 1 same

16204-HCC 16204 TG12740 Elovl5 intron 3 disrupt CDS chr9 77,815,147 1 same

16204-HCC 16204 TG12740 Fbxl2 intron 14 disrupt CDS chr9 113,888,177 1 inv

16204-HCC 16204 TG12740 Hmgn3 5 prime 77.392 kb chr9 83,117,604 1 same

16204-HCC 16204 TG12740 Klhl31 3 prime 53.552 kb chr9 77,561,481 1 inv

16204-HCC 16204 TG12740 Myo1e intron 25 disrupt CDS chr9 70,230,780 1 same






page 41








16204-HCC 16204 TG12740 Nck1 intron 1 not disrupt CDS chr9 100,436,912 1 same


16204-HCC 16204 TG12740 Plscr1 5 prime 38.901 kb chr9 92,127,912 1 inv

16204-HCC 16204 TG12740 Scaper intron 26 disrupt CDS chr9 55,494,196 1 same


16204-HCC 16204 TG12740 Snap91 5 prime 37.975 kb chr9 86,813,182 1 same

16204-HCC 16204 TG12740 Suhw4 3 prime 32.515 kb chr9 72,244,093 1 inv

16204-HCC 16204 TG12740 Zic1 3 prime 84.345 kb chr9 91,176,292 1 inv

16204-HCC 16204 TG12740 Lancl3 5 prime 69.473 kb chrX 8,775,738 1 inv


16204-HCC 16204 TG12740 Thoc2 intron 15 disrupt CDS chrX 39,195,794 1 inv

page 42

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Table S5. Transposon integration sites identified in SB …...2009/10/01 · Tumor ID Mouse ID...

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