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The three infrastructure crises in science

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These are the slides for a talk I gave at Forschungszentrum Borstel on Nov. 6, 2012.
59
What’s wrong with scholarly publishing today? Björn Brembs Universität Regensburg http://brembs.net
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Page 1: The three infrastructure crises in science

What’s wrong with scholarly publishing today?

Björn BrembsUniversität Regensburg

http://brembs.net

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What is the problem?

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An antiquated scientific infrastructure

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A technically easy solution…

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..but with numerous political roadblocks

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Example of a major political roadblock

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The three infrastructure crises of science

Björn BrembsUniversität Regensburg

http://brembs.net

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CRISIS I

Dysfunctional scholarly literature

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Literature

• Limited access

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Literature

• Limited access• No global search

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Literature

• Limited access• No global search• No hyperlinks

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Literature

• Limited access• No global search• No hyperlinks• No data visualization

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Literature

• Limited access• No global search• No hyperlinks• No data visualization• No submission

standards

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Literature

• Limited access• No global search• No hyperlinks• No data visualization• No submission

standards• (Almost) no statistics

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Literature

• Limited access• No global search• No hyperlinks• No data visualization• No submission

standards• (Almost) no statistics• No text/data-mining

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Literature

• Limited access• No global search• No hyperlinks• No data visualization• No submission

standards• (Almost) no statistics• No text/data-mining• No effective way to sort,

filter and discover

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Literature

• Limited access• No global search• No hyperlinks• No data visualization• No submission

standards• (Almost) no statistics• No text/data-mining• No effective way to sort,

filter and discover• No scientific impact

analysis• No networking feature• etc.

…it’s like the web in 1995!

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CRISIS II

Scientific data in peril

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CRISIS III

Non-existent software archives

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My Digital Utopia:

• No more corporate publishers – libraries archive everything and make it publicly accessible according to a world-wide standard

• Single semantic, decentralized database of literature, data and software

Technically feasible today (almost)

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More scientists, more publications

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JournalRank

• Thomson Reuters: Impact Factor• Eigenfactor (now Thomson Reuters)• ScImago JournalRank (SJR)• Scopus: SNIP, SJR

Source Normalized Impact per Paper

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JournalRank

Only read publications from high-ranking journals

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Job applications

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Job application instructions

Publikationstätigkeit(vollständige Publikationsliste, darunter Originalarbeiten als Erstautor/in, Seniorautor/in, Impact-Punkte insgesamt und in den letzten 5 Jahren, darunter jeweils gesondert ausgewiesen als Erst- und Seniorautor/in, persönlicher Scientific Citations Index (SCI, h-Index nach Web of Science) über alle Arbeiten)

Publications:Complete list of publications, including original research papers as first author, senior author, impact points total and in the last 5 years, with marked first and last-authorships, personal Scientific Citations Index (SCI, h-Index according to Web of Science) for all publications.

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JournalRank

Only read publications from high-ranking journals

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JournalRank

Only publish in high-ranking journals

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METRICS

Lies, damn lies and bibliometrics

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Show of hands:

• Who knows what the IF is?• Who uses the IF to pick a journal

(rate a candidate, etc.)?• Who knows how the IF is calculated

and from what data?

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The Impact Factor

A1 A2

C12

time

citationspublished

articlespublished

year 1 year 2 year 3

𝐼𝐹 (𝑦𝑒𝑎𝑟 3)=C12

A1+A2

Introduced in 1950’s by Eugene Garfield: ISI

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The Impact Factor

40 60

100

time

citationspublished

articlespublished

year 1 year 2 year 3

𝐼𝐹 (𝑦𝑒𝑎𝑟 3)=100

4 0+60=1

Introduced in 1950’s by Eugene Garfield: ISI

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The Impact Factor

Journal X IF 2010=

All citations from TR indexed journals in 2012 to papers in journal X

Number of citable articles published in journal X in 20010/11

€30,000-130,000/year subscription ratesCovers ~11,500 journals (Scopus covers ~16,500)

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Main Problems with the IF

• Negotiable

• Irreproducible

• Mathematically

unsound

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Negotiable

• PLoS Medicine, IF 2-11 (8.4)(The PLoS Medicine Editors (2006) The Impact Factor Game. PLoS Med 3(6): e291. http://www.plosmedicine.org/article/info:doi/10.1371%2Fjournal.pmed.0030291)

• Current Biology IF from 7 to 11 in 2003– Bought by Cell Press (Elsevier) in 2001…

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Not Reproducible

• Rockefeller University Press bought their data from Thomson Reuters

• Up to 19% deviation from published records• Second dataset still not correct

Rossner M, van Epps H, Hill E (2007): Show me the data. The Journal of Cell Biology, Vol. 179, No. 6, 1091-1092 http://jcb.rupress.org/cgi/content/full/179/6/1091

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Not Mathematically Sound

• Left-skewed distributions• Weak correlation of individual article citation

rate with journal IF

Seglen PO (1997): Why the impact factor of journals should not be used for evaluating research. BMJ 1997;314(7079):497 (15 February)http://www.bmj.com/cgi/content/full/314/7079/497

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Journal rank and unreliability

Munafò, M., Stothart, G., & Flint, J. (2009). Bias in genetic association studies and impact factor Molecular Psychiatry, 14 (2), 119-120 DOI: 10.1038/mp.2008.77

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Data from: Fang, F., & Casadevall, A. (2011). RETRACTED SCIENCE AND THE RETRACTION INDEX Infection and Immunity DOI: 10.1128/IAI.05661-11

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Journal rank and fraud/error

Fang et al. (2012): Misconduct accounts for the majority of retracted scientific publications. PNAS 109 no. 42 17028-17033

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ALBERT EINSTEIN

"Not everything that can be counted counts, and not everything that counts can be counted."

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Job applications

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MESSAGE:

Where you publish is more important to us than what you publish!

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Think…

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MONEY?

Corporate publishers‘ profits can easily finance all reforms

Image source: http://www.flickr.com/photos/wakingtiger/3156791383/sizes/m/in/photostream/

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Subscription Pricing

KIT Library10 Most expensive journal subscriptions 2010/11

Journal Price [€/a] PublisherBiochimica et Biophysica Acta 19,130.53 Elsevier

Chemical Physics Letters 15,577.06 Elsevier

Journal of Organometallic Chemistry 13,664.97 Elsevier

Journal of Radioanalytical and Nuclear Chemistry 13,381.07 Springer

Nuclear Instruments & Methods in Physics Research / A 11,958.32 Elsevier

Surface Science 11,796.75 Elsevier

Inorganica Chimica Acta 10,703.21 Elsevier

Journal of Mathematical Analysis and Applications 10,692.75 Elsevier

Journal of Coordination Chemistry 10,314.92 Taylor & Francis

Journal of Magnetism and Magnetic Materials 10,047.30 Elsevier

Total top ten: 127,266.88

http://www.bibliothek.kit.edu/cms/teuerste-zeitschriften.php

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Elsevier Profits

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Corporate profits

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4b € per year for 10,000 university libraries: 400,000 € per year per

library


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