Toxic Compounds in Natural Water
- A Case for Laccase -
Water pollution through microcontaminants
2
Water pollution is one of the main environmental worries of our society
Test of water quality:
• Approx. 250 human and veterinarian pharmaceuticals found
• Sufficient information available for only 70 of them
• No defined limit value for most of them
Committee on the Environment,
Public Health and Food Safety
Ibuprofen
Estradiol Estrone
Ethinyl estradiol
Diclofenac
Naproxen
Anthracene Naphthalene
Acenaphthene
Phenanthrene
Water pollution through microcontaminants
3
Lindane
Estradiol Estrone
Ethinyl estradiol
• Most important female sexual hormones
• Ethinyl estradiol is much slower
metabolized and thus more effective
Estrogens
4
Ethinyl estradiol
Impact of Estrogens
5
• Sewage plants are not able to degrade
estrogen derivates
• Hormone active substances in the water body
Influence on the Environment:
• Feminization of fish
• Feminization of birds
Suspected Influence on Humans:
• Decreasing sperm count
• Testicular cancer
6
Laccase
7
• polyphenol-oxidase (EC 1.10.3.2)
• ubiquitous enzyme found in many
plants, fungi and microorganisms
• broad range of substrates,
mainly phenolic compounds
Laccase from T. versicolor, created with Jmol
with data from www.rcsb.org
Overview
8
Overview
9
The following laccases were produced successfully:
organism name of
protein
name given by
iGEM team used chassis
Bacillus pumilus DSM 27 CotA BPUL E. coli KRX
Escherichia coli BL21(DE3) CueO ECOL E. coli KRX
Thermus thermophilus HB27 TthL TTHL E. coli Rosetta-Gami 2
Bacillus halodurans C-125 Lbh1 BHAL E. coli Rosetta-Gami 2
Trametes versicolor Lcc1 TVEL0
Establishment of methods with TVEL0, a laccase from Trametes versicolor
Cultivation and Purification
10
Overview
11
Activity Assay
12
Oxidation of ABTS measured at 420 nm
H2O
O2
Laccase
Laccaseox
ABTS
ABTSox
Field et al., 1998 (modified)
Absorb
ance [
-]
Wavelength [nm]
1
0.5
0
1.5
200 300 400
ABTS ABTSox
Reaction:
ABTS - artificial substrate
2,2'-azino-bis(3-ethylbenzothiazoline-6-sulphonic acid)
Activity Assay
13
0 1 2 3 4 50
10
20
30
40
50
60
ECOL
BPUL
BHAL
TTHL
AB
TS
ox [
µM
]
Time [h] n = 4ECOL BPUL BHAL TTHL
0.0
0.2
0.4
0.6
Sp
ec.
en
zym
e a
ctivity [
U m
g-1]
n = 4
1 U = 1 µmol ABTSox formed per minute
Comparison of four different laccases
Activity Assay
14
Assay of pH and temperature effects
pH 1 pH 3 pH 5 pH 7 pH 90.0
0.1
0.2
0.3
0.4
Sp
ec.
en
zym
e a
ctivity [
U m
g-1] ECOL
BPUL
n = 4
1 U = 1 µmol ABTSox formed per minute
10 °C 25 °C0.0
0.2
0.4
0.6
Sp
ec.
en
zym
e a
ctivity [
U m
g-1] ECOL
BPUL
n = 4
Activity Assay - Summary
15
Four active laccases (~0.5 U mg-1)
Activity optimum at pH 5
Activity at low temperatures
ECOL BPUL BHAL TTHL0.0
0.2
0.4
0.6
Sp
ec.
en
zym
e a
ctivity [
U m
g-1]
n = 4
pH 1 pH 3 pH 5 pH 7 pH 90.0
0.1
0.2
0.3
0.4
Sp
ec.
en
zym
e a
ctivity [
U m
g-1] ECOL
BPUL
n = 4
10 °C 25 °C0.0
0.2
0.4
0.6
Sp
ec.
en
zym
e a
ctivity [
U m
g-1] ECOL
BPUL
n = 4
Overview
16
Substrate Analysis
17
Without laccase TVEL0 With laccase TVEL0
Can laccases degrade ethinyl estradiol?
Substrate Analysis
18
without
laccase
BPUL ECOL TVEL00
20
40
60
80
100
Estr
ad
iol d
eg
rad
atio
n [
%]
Degradation of estradiol after 3 hours
Substrate Analysis
19
without
laccase
BPUL ECOL TVEL00
20
40
60
80
100
Eth
inyl e
str
adio
l deg
radation [%
]
without
laccase
BPUL ECOL TVEL00
20
40
60
80
100
Eth
inyl e
str
adio
l deg
radation [%
]
Degradation of ethinyl estradiol,
after 3 hours
Degradation of ethinyl estradiol using
ABTS as mediator, after 10 minutes
Substrate Analysis - Summary
20
Produced bacterial laccases degrade estradiol without ABTS
TVEL0 laccase degrades ethinyl estradiol
Produced bacterial laccases degrade ethinyl estradiol
with ABTS
without
laccase
BPUL ECOL TVEL00
20
40
60
80
100
Eth
inyl e
str
ad
iol d
eg
rad
atio
n [
%]
without
laccase
BPUL ECOL TVEL00
20
40
60
80
100
Eth
inyl e
str
adio
l deg
radation [%
]
without
laccase
BPUL ECOL TVEL00
20
40
60
80
100
Estr
ad
iol d
eg
rad
atio
n [
%]
Overview
21
Immobilization
22
CPC = Controlled Pore Carrier
Immobilization
23
TVEL0 BPUL ECOL0
20
40
60
80
100
Perc
enta
ge
of b
oun
d p
rote
in [
%]
n = 3
Percentage of immobilized laccases
relative to initial concentration
BPUL ECOL0
20
40
60
80
100
Rela
tive s
pec.
activity [%
]
n = 3
Relative specific activity of immobilized
laccases
Immobilization - Summary
24
Immobilization of produced laccases with a
binding capacity > 98%
Immobilized BPUL active
TVEL0 BPUL ECOL0
20
40
60
80
100
Perc
enta
ge
of b
oun
d p
rote
in [
%]
n = 3
BPUL ECOL0
20
40
60
80
100
Rela
tive s
pec.
activity [%
]
n = 3
Overview
25
Human Practice - Overview
26
Human Practice - Overview
27
Interview with an expert of the
Institute of Fisheries Ecology
taken from wikipedia
First CeBiTec Student Academy
SynBioDay Germany,
Street Science in Bielefeld
Human Practice - Overview
28
Strategy process „Biotechnologie 2020+“
CAS conference for Synthetic Biology
Meeting with a member
of the german parliament
Feasibility studies with two
sewage treatment plants
Human Practice – Real world application
29
Goal: Real world application using existing structures within treatment plants
Cooperation with two sewage treatment plants to identify potential operation sites
Best suited location: Flocculation filtration
Human Practice – Real world application
30
Taken and modified from sewage treatmant plant Obere Lutter
Human Practice – Real world application
31
Taken and modified from sewage treatmant plant Obere Lutter
Model
32
Simulation of ABTS oxidation using laccase from B. pumilus (BPUL) according to
the conditions in the sewage treatment plant
Assumptions
• 80 % of substrate degraded
• Substrate concentration << KM
• Values of a typical german sewage plant
Overview
33
Achievements
34
We successfully…
generated four well characterized laccases for the community
produced four purified and active laccases
immobilized two of our produced laccases and measured their activities
improved a BioBrick by clarifying its true function
created a database for the community to organize their samples
conducted a feasibility study of our project with sewage plant experts
created a model which simulates the usability of our own laccases in an
actual treatment plant
did an extending outreach work
did collaborations with SDU-Denmark and UCL
constructed a shuttle vector for site directed integration in P. pastoris
Outlook
35
The expression of eukaryotic laccases in P. pastoris using our own
shuttle vector
Measurement of other substrates with HPLC and screening for
degradation products with LC-MS
Optimizing the immobilization conditions of ECOL and analyzing
those for BHAL and TTHL
Cellulose binding domain as an alternative immobilization
strategy for sewage treatment
Testing our degradation system in lab scale and sewage plants
Acknowledgements
36
Thank You!
WG Fermentation Engineering
WG Microbial Genomics and Biotechnology
Prof. Dr. Alfred Pühler
Prof. Dr. Erwin Flaschel
Dr. Jörn Kalinowski
Dr. Christian Rückert
Nils-Christian Lübke
Timo Wolf
Dr. Marcus Persicke
Dr. Thomas Hug
Dominik Cholewa