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Unit III - Biochemistry
Hierarchy of OrganizationEcosystem Community Population Organism Organ System Organ Tissue Cell Organelle Molecule Atom
Why is water so important to life?What does it do that is so important?
Water allows for easier transport…
Water allows chemical reactions to occur…■ Most reactions require dissolved chemicals
Water holds heat very well…■ Aquatic organisms do not have wild temp change
■ Coastal habitats have less temp fluctuation■ Your body temp does not fluctuate wildly
Frozen water floats on liquid water…■ Aquatic life is insulated from cold
temperatures when the top layer is frozen
Why water? Why is it so special?
Electronegativity!(how hard atoms pull on electrons)
Remember this?
Atoms need 8 electrons on outer shell (or a full outer shell) to be “happy”
Atoms need 8 electrons on outer shell (or a full outer shell) to be “happy”
Atoms need 8 electrons on outer shell (or a full outer shell) to be “happy”
Atoms need 8 electrons on outer shell (or a full outer shell) to be “happy”
Who wants those electrons more – H or O?
Atoms need 8 electrons on outer shell (or a full outer shell) to be “happy”
This POLARITY
is the reason why water is so
special!
Do you remember these from yesterday?
WaterWhy is Water Important
to Organisms?❑ Bathes cells❑ Needed for chemical
reactions❑ Used for transport❑ Holds/transfers heat
WaterWhy is water so special? …it has POLARITY
occurs because O pulls electrons harder than H’s pull…makes each have a slight charge
WaterWater’s charged sides attract to other molecules
with charges (it’s kinda “sticky”)❑ These are called hydrogen bonds❑ Are weaker than ionic/covalent, but they add up!
hydro- water
Water■ Water has many special properties, most of
which occur because of the hydrogen bonding
■ As you go through each of the properties be sure to look for 3 things:❑ Definition of the property❑ Why the property happens❑ Why the property is important to organisms
WaterSpecial properties:ADHESION - attraction btwn water & another type
of molecule- where did you see that on your mini-lab?
COHESION - water sticks to itself- where did you see that on your mini-lab?
WHY does it happen? Polar (sticky ends) grab each other
co - together
WaterA special type of adhesion…
capillarity: water “climbs” up thin tubes
Ex: water moves thru tubes in plants and animals (veins, etc)
WaterA special type of cohesion…
surface tension: forms strong layer; beads up
WHY? hydrogen-bonds make water stick to itselfEx: bugs on water surfaces; dew droplets gather
on leaves
co - together
WaterSpecial properties:
high specific heat: - water holds its heat very well (hard to change its temp)
- must break a lot of H-bonds before energy can be used to raise temp
- Ex: coastal/aquatic ecosystems & individual organisms are protected from wild temp changes, Costal
towns are more humid in temps
WaterSpecial properties:
high heat of vaporization: - lots of heat is removed as water goes from liquid to gas
WHY? The hottest molecules leave first & fastest (lowers the average temperature)
- Ex: sweating
WaterSpecial properties: ice floats on water:
- solid H2O is less DENSE than liquid water
WHY? the H-bonds hold molecules far apart (more VOLUME)
- Ex: lakes freeze from top down… insulates aquatic life below
WaterSpecial properties:universal solvent: water dissolves many substances - water will dissolve things that have charges (ionic & polar covalent compounds) - Ex: most chemical reactions require aqueous solutions
(dissolved substances)
pH – a measure of H+ ions scale is 0 - 14
■ acids❑ pH < 7 ❑ tend to start with “H”; ex: HCl
■ bases❑ pH >7❑ tend to end in “OH”; ex: NaOH
pH – a measure of H+ ions Scale is 0 - 14❑ each pH level is 10 times more than next❑ pH 3 is 10x more acidic than pH 4❑ pH 3 is 100x more acidic than pH 5
■ Why pH matters to life –❑ Chemical rxns require specific pH levels❑ Acid rain affects ecosystems❑ Some enzymes are broken by extreme pH
■ Buffers - ❑ What? - Chemicals that keep pH stable❑ Why? - Reactions may not work if at wrong pH
pH – a measure of H+ ions
Bell Ringer
■Finish your reflections❑Pre-AP= 10-12 sentences on why water is
important to life, and list and describe the water properties
❑Biology= 6-8 sentences on why water is important to life, and list (briefly describe) the water properties
Organic Compounds■ Organic compounds come from organisms■ They include 4 major groups:
❑ carbohydrates, lipids, nucleic acids, & proteins■ All are very large molecules built from small units■ Monomer = building block■ Polymer = large molecule
mono - onepoly - many
Organic Compounds■ Monomers can be joined to each other to make
polymers ■ They are joined by removing water
❑ Called dehydration synthesis (or condensation) “to make by removing water”
hydr – watersyn - together
Organic Compounds■ Polymers can be broken apart into monomers
❑ This process breaks larger molecule by adding water❑ Called hydrolysis “to break with water”
hydr – waterlys - burst
Organic CompoundsCarbohydrates (C,H,O)
■ Structuremonosaccharide:
polysaccharide: (monomer) (polymer)
mono- onepoly- manysacchar- sugar
Organic Compounds
CarbohydratesExamples of Simple Sugars
❑ Glucose (simple sugar) - cell energy
❑ Others: fructose, dextrose, … (end in “ose”
Organic Compounds
CarbohydratesExamples of Polysaccharides
❑ Starch – how plants store extra glucose
❑ Glycogen – how animals store extra glucose
❑ Cellulose – makes up cell walls of plants; dietary fiber
❑ Chitin – makes up cell walls of fungi/insect exoskeletons
Organic CompoundsLipids (C,H,O)
Structure – nonpolar (do not like water) monomer is the fatty acid chain
Organic CompoundsLipids
Types: ■ saturated fats – hold as much H as possible;
solid at room temp; animal fats
Organic CompoundsLipids
■ Types:■ unsaturated fats – missing H due to multiple
bonds; liquid at room temp; plant oils
Organic CompoundsLipids
Examples – ❑ Triglycerides – fats & oils used for long-term energy storage
tri- threeglyc- sugar
Organic CompoundsLipids
Examples – phospholipids: have polar side & nonpolar side; make up cell membrane
steroids: ringed molecules; hormones (cholesterol, testosterone, estrogen)
Organic CompoundsNucleic Acids (C,H,O,N,P,S)
Monomer is the nucleotide:
Examples: DNA, RNA (genetic material- hereditary info)
Organic CompoundsProteins
(C,H,O,N,S)Monomer is the amino acid:
Organic CompoundsProteins
Examples: numerous! ❑ Collagen❑ Hemoglobin❑ Insulin❑ Enzymes (pepsin, etc)
Functions – build structures, enzymes, hormones
Organic CompoundsProteins
Structure – simple proteins: complex proteins:
On page 31- testing unknowns■Carbohydrate test❑BENEDICT’S TEST❑IODINE TEST
■Lipids test❑PAPER TOWEL TEST
Results from testingBenedicts and Iodine Lipids
Biuret test (proteins)
Bell Ringer Activity Page 30
■In your table group, you will be working on your COMPARING BIOMOLECULES sheet.
■This is for a grade, and you will see this on your quiz tomorrow as well as your test next week
Enzymes (Special Proteins!)■ Enzymes are needed in order to SPEED UP
reactions■ The enzyme does NOT get USED in the reaction
■ https://www.youtube.com/watch?v=CZD5xsOKres
Enzymes (Special Proteins!)■ Enzymes are very SPECIFIC – they only work with one reaction
■ Every chemical reaction has at least ONE enzyme■ If an enzyme is missing, a DEFECT will result
❑ Ex: ALBINOS are missing enzyme for melanin…lactose-intolerant people are missing LACTASE
Enzymes (Special Proteins!)■ NAMING ENZYMES❑ Usually end in “ase” (name usually linked to
substrate)❑ Note: enzymes do NOT always break down
things…they work for building reactions too!
SUBSTANCES A B PRODUCT AB
ENZYME ENZYME
Naming Enzymes
■Usually ends with ase
■ Lactase breaks down lactose■Sucrase breaks down sucrose■Peptidase/pepsin breaks down protein■Catalase breaks down water based
compounds (fat soluble, polarity etc)■Amylase breaks down starch
III.Enzymes (Special Proteins!)■ Enzymes must be in the correct SHAPE or their
substrates will not fit in with them■ Unfolding of an enzyme is called DENATURATION
❑ May be caused by BOILING (high heat), or strong acids/bases (extreme pH’s)
Self-Quiz – Chemistry■ 1. Water moving thru tiny tubes is -
A. capillarity C. cohesion B. surface tension D. specific heat■ 2. Which of the following is the weakest?
A. ionic bonds C. hydrogen bondsB. electrovalent bonds D. covalent bonds
Self-Quiz – Chemistry■ 3. Most of water’s special properties are due
to the fact that it is –A. polar B. neutral C. covalent D. nonpolar
■ 4. Weak attractions between water molecules are - A. covalent bonds C. Ionic bondsB. H-bonds D. nonpolar bonds
Self-Quiz – Chemistry■ 5. To build polymers,
A. monomers are hydrolyzed C. water is addedB. monomers are broken down D. water is removed
■ 6. Hydrolysis -A. builds muscle tissue C. is used in digestionB. creates water D. produces polymers
Self-Quiz – Chemistry■ 7. Crabs in a lake don’t worry about wild temperature
changes in their home because water has -A. less density as a solid C. high specific heatB. capillarity D. high surface tension
■ 8. Water forms droplets due to its -A. covalent bonding C. high heat of vaporizationB. cohesion D. hydrolization
Self-Quiz – Chemistry■ 9. What does “polarity” actually mean?■ 10. What is a “monomer”?■ 11. What is the monomer for carbohydrates called?■ 12. Name 2 food sources high in carbs.
The End
Lab – Enzyme Reactions■ I. Purpose: How does a strong acid and high
temperature affect enzyme activity?■ II. Background: Enzymes make chemical reactions
go faster.■ III. Hypothesis: Strong acid will make an enzyme
reaction go ___. High temp will make an enzyme reaction go ___.
■ IV. Procedure: (draw picture)
Lab – Enzyme Rate of ReactionI. Purpose: How does the level of ___ affect the rate of reaction involving the enzyme catalase & hydrogen peroxide?
II. Background: state what you know about the question (what you know about enzymes, substrate, the variable tested, etc)
III. Hypothesis: An increase in ___ will cause the rate of reaction to ___.
IV. Procedure: (sketch & label your design)
Lab – Enzyme Rate of ReactionIV. Procedure: (sketch & label your design)
V. Data: (create your data table and graph axes here)
VI. Conclusion: (must be complete sentences for credit!)
- data summary - support or not - SoE - how to fix
Lab - Denaturation■ V. Data Describe what happened.■ VI. Conclusion Strong acid causes enzyme reactions to… High temp causes enzyme reactions to… This effect is called ____________.
Solid water floats…solid oil sinks!