+ All Categories
Home > Documents > UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of...

UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of...

Date post: 15-Aug-2020
Category:
Upload: others
View: 0 times
Download: 0 times
Share this document with a friend
45
UvA-DARE is a service provided by the library of the University of Amsterdam (http://dare.uva.nl) UvA-DARE (Digital Academic Repository) Evaluating medical tests and biomarkers In primary studies and systematic reviews Wang, J. Link to publication Creative Commons License (see https://creativecommons.org/use-remix/cc-licenses): Other Citation for published version (APA): Wang, J. (2017). Evaluating medical tests and biomarkers: In primary studies and systematic reviews. General rights It is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), other than for strictly personal, individual use, unless the work is under an open content license (like Creative Commons). Disclaimer/Complaints regulations If you believe that digital publication of certain material infringes any of your rights or (privacy) interests, please let the Library know, stating your reasons. In case of a legitimate complaint, the Library will make the material inaccessible and/or remove it from the website. Please Ask the Library: https://uba.uva.nl/en/contact, or a letter to: Library of the University of Amsterdam, Secretariat, Singel 425, 1012 WP Amsterdam, The Netherlands. You will be contacted as soon as possible. Download date: 21 Nov 2020
Transcript
Page 1: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

UvA-DARE is a service provided by the library of the University of Amsterdam (http://dare.uva.nl)

UvA-DARE (Digital Academic Repository)

Evaluating medical tests and biomarkersIn primary studies and systematic reviewsWang, J.

Link to publication

Creative Commons License (see https://creativecommons.org/use-remix/cc-licenses):Other

Citation for published version (APA):Wang, J. (2017). Evaluating medical tests and biomarkers: In primary studies and systematic reviews.

General rightsIt is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s),other than for strictly personal, individual use, unless the work is under an open content license (like Creative Commons).

Disclaimer/Complaints regulationsIf you believe that digital publication of certain material infringes any of your rights or (privacy) interests, please let the Library know, statingyour reasons. In case of a legitimate complaint, the Library will make the material inaccessible and/or remove it from the website. Please Askthe Library: https://uba.uva.nl/en/contact, or a letter to: Library of the University of Amsterdam, Secretariat, Singel 425, 1012 WP Amsterdam,The Netherlands. You will be contacted as soon as possible.

Download date: 21 Nov 2020

Page 2: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

Bibliography[1] Petra Macaskill, Constantine Gatsonis, Jonathan Deeks, Roger Harbord, and Yemisi Takwoingi. Cochrane hand-

book for systematic reviews of diagnostic test accuracy. Version 0.9. 0. London: The Cochrane Collaboration,

2010.

[2] Yemisi Takwoingi, Mariska MG Leeflang, and Jonathan J Deeks. Empirical evidence of the importance of

comparative studies of diagnostic test accuracy. Annals of internal medicine, 158(7):544–554, 2013.

[3] Frank Harrell. Regression modeling strategies: with applications to linear models, logistic and ordinal regression,

and survival analysis. Springer, 2015.

[4] Leiv M Hove. Epidemiology of scaphoid fractures in bergen, norway. Scandinavian journal of plastic and

reconstructive surgery and hand surgery, 33(4):423–426, 1999.

[5] Hey Hwee Weng Dennis, Alphonsus Chong Khin Sze, and Diarmuid Murphy. Prevalence of carpal fracture in

singapore. The Journal of hand surgery, 36(2):278–283, 2011.

[6] AB Mink van der Molen, JW Groothoff, GJP Visser, PH Robinson, and WH Eisma. Time off work due to

scaphoid fractures and other carpal injuries in the netherlands in the period 1990 to 1993. Journal of Hand

Surgery, 24(2):193–198, 1999.

[7] EBH Van Onselen, RB Karim, J Joris Hage, and MJPF Ritt. Prevalence and distribution of hand fractures.

Journal of Hand Surgery, 28(5):491–495, 2003.

[8] Richard H Gelberman and Michael S Gross. The vascularity of the wrist: Identification of arterial patterns at

risk. Clinical orthopaedics and related research, 202:40–49, 1986.

[9] Steven J Rhemrev, Daan Ootes, Frank JP Beeres, Sven AG Meylaerts, and Inger B Schipper. Current methods

of diagnosis and treatment of scaphoid fractures. International journal of emergency medicine, 4(1):4, 2011.

[10] Gregory A Merrell, Scott W Wolfe, and Joseph F Slade. Treatment of scaphoid nonunions: quantitative meta-

analysis of the literature. The Journal of hand surgery, 27(4):685–691, 2002.

[11] JJ Dias, CJ Wildin, B Bhowal, and JR Thompson. Should acute scaphoid fractures be fixed?: a randomized

controlled trial. JBJS, 87(10):2160–2168, 2005.

[12] Lauren Adey, J Sebastiaan Souer, Santiago Lozano-Calderon, William Palmer, Sang-Gil Lee, and David Ring.

Computed tomography of suspected scaphoid fractures. The Journal of hand surgery, 32(1):61–66, 2007.

[13] Santiago Lozano-Calderón, Philip Blazar, David Zurakowski, Sang-Gil Lee, and David Ring. Diagnosis of

scaphoid fracture displacement with radiography and computed tomography. JBJS, 88(12):2695–2703, 2006.

[14] Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature

review. European Journal of Emergency Medicine, 12(2):47–51, 2005.

[15] SJ Rhemrev, FJP Beeres, RH van Leerdam, M Hogervorst, and D Ring. Clinical prediction rule for suspected

scaphoid fractures: a prospective cohort study. Injury, 41(10):1026–1030, 2010.

238

Page 3: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

[16] Koray Unay, Bahadir Gokcen, Korhan Ozkan, Oguz Poyanli, and Engin Eceviz. Examination tests predictive of

bone injury in patients with clinically suspected occult scaphoid fracture. Injury, 40(12):1265–1268, 2009.

[17] Zhong-Gang Yin, Jian-Bing Zhang, Shi-Lian Kan, and Xiao-Gang Wang. Diagnosing suspected scaphoid

fractures: a systematic review and meta-analysis. Clinical Orthopaedics and Related Research®, 468(3):723–

734, 2010.

[18] Paul J Jenkins, Kate Slade, James S Huntley, and C Michael Robinson. A comparative analysis of the accuracy,

diagnostic uncertainty and cost of imaging modalities in suspected scaphoid fractures. Injury, 39(7):768–774,

2008.

[19] Wouter Mallee, Job N Doornberg, David Ring, C Niek van Dijk, Mario Maas, and J Carel Goslings. Comparison

of ct and mri for diagnosis of suspected scaphoid fractures. JBJS, 93(1):20–28, 2011.

[20] Steven J Rhemrev, Andele D de Zwart, Lucas M Kingma, Sven AG Meylaerts, Jan-Willem Arndt, Inger B

Schipper, and Frank JP Beeres. Early computed tomography compared with bone scintigraphy in suspected

scaphoid fractures. Clinical nuclear medicine, 35(12):931–934, 2010.

[21] MJ Breitenseher, S Trattnig, C Gäbler, B Happel, A Bankier, C Kukla, T Rand, and H Imhof. Mri in radiologically

occult scaphoid fractures. initial experiences with 1.0 tesla (whole body-middle field equipment) versus 0.2 tesla

(dedicated low-field equipment). Der Radiologe, 37(10):812–818, 1997.

[22] W Roolker, MMC Tiel-van Buul, MJPF Ritt, BWJM Verbeeten, FMM Griffioen, and AH Broekhuizen. Experi-

mental evaluation of scaphoid x-series, carpal box radiographs, planar tomography, computed tomography, and

magnetic resonance imaging in the diagnosis of scaphoid fracture. Journal of Trauma and Acute Care Surgery,

42(2):247–253, 1997.

[23] Jeffrey A Senall, Joseph M Failla, J Antonio Bouffard, and Marnix van Holsbeeck. Ultrasound for the early

diagnosis of clinically suspected scaphoid fracture. The Journal of hand surgery, 29(3):400–405, 2004.

[24] MM Tiel-van Buul, EJ Van Beek, AH Broekhuizen, AJ Bakker, KE Bos, and EA Van Royen. Radiography and

scintigraphy of suspected scaphoid fracture. a long-term study in 160 patients. Bone & Joint Journal, 75(1):

61–65, 1993.

[25] SD Brookes-Fazakerley, AJ Shyam Kumar, and J Oakley. Survey of the initial management and imaging protocols

for occult scaphoid fractures in uk hospitals. Skeletal radiology, 38(11):1045–1048, 2009.

[26] Ashley M Groves, Irfan Kayani, Rizwan Syed, Brian F Hutton, Philip PW Bearcroft, Adrian K Dixon, and

Peter J Ell. An international survey of hospital practice in the imaging of acute scaphoid trauma. American

Journal of Roentgenology, 187(6):1453–1456, 2006.

[27] William B Geissler, Julie E Adams, Randy R Bindra, William D Lanzinger, and David J Slutsky. Scaphoid

fractures: what¡¯s hot, what¡¯s not. JBJS, 94(2):169–181, 2012.

[28] Michael E Rettig and Keith B Raskin. Retrograde compression screw fixation of acute proximal pole scaphoid

fractures. The Journal of hand surgery, 24(6):1206–1210, 1999.

[29] Charles D Bond, Alexander Y Shin, Mark T McBride, and Khiem D Dao. Percutaneous screw fixation or cast

immobilization for nondisplaced scaphoid fractures. JBJS, 83(4):483, 2001.

239

Page 4: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

[30] Bertil Vinnars, Mihai Pietreanu, Åke Bodestedt, Fredrik Af Ekenstam, and Bengt Gerdin. Nonoperative com-

pared with operative treatment of acute scaphoid fractures: a randomized clinical trial. JBJS, 90(6):1176–1185,

2008.

[31] John R Fowler and Asif M Ilyas. Headless compression screw fixation of scaphoid fractures. Hand clinics, 26

(3):351–361, 2010.

[32] Geert A Buijze, Job N Doornberg, John S Ham, David Ring, Mohit Bhandari, and Rudolf W Poolman. Surgical

compared with conservative treatment for acute nondisplaced or minimally displaced scaphoid fractures: a

systematic review and meta-analysis of randomized controlled trials. JBJS, 92(6):1534–1544, 2010.

[33] William E Sanders. Evaluation of the humpback scaphoid by computed tomography in the longitudinal axial

plane of the scaphoid. The Journal of hand surgery, 13(2):182–187, 1988.

[34] Jennifer M Ty, Santiago Lozano-Calderon, and David Ring. Computed tomography for triage of suspected

scaphoid fracturesw. Hand, 3(2):155–158, 2008.

[35] Dushan Thavarajah, Turab Syed, Yousef Shah, and Martin Wetherill. Does scaphoid bone bruising lead to occult

fracture? a prospective study of 50 patients. Injury, 42(11):1303–1306, 2011.

[36] Debdut Biswas, Jesse E Bible, Michael Bohan, Andrew K Simpson, Peter G Whang, and Jonathan N Grauer.

Radiation exposure from musculoskeletal computerized tomographic scans. JBJS, 91(8):1882–1889, 2009.

[37] IR McDougall and RP Rieser. Scintigraphic techniques in musculoskeletal trauma. Radiologic clinics of North

America, 27(5):1003–1011, 1989.

[38] David Ring and Santiago Lozano-Calderón. Imaging for suspected scaphoid fracture. Journal of Hand Surgery,

33(6):954–957, 2008.

[39] Mazda Memarsadeghi, Martin J Breitenseher, Cornelia Schaefer-Prokop, Michael Weber, Silke Aldrian, Chris-

tian Ga?bler, and Mathias Prokop. Occult scaphoid fractures: comparison of multidetector ct and mr imag-

ing¡ªinitial experience. Radiology, 240(1):169–176, 2006.

[40] Theodore A Dorsay, Nancy M Major, and Clyde A Helms. Cost-effectiveness of immediate mr imaging versus

traditional follow-up for revealing radiographically occult scaphoid fractures. American Journal of Roentgenol-

ogy, 177(6):1257–1263, 2001.

[41] Penny Whiting, Anne WS Rutjes, Johannes B Reitsma, Patrick MM Bossuyt, and Jos Kleijnen. The development

of quadas: a tool for the quality assessment of studies of diagnostic accuracy included in systematic reviews.

BMC medical research methodology, 3(1):25, 2003.

[42] Poul T Nielsen, Jess Hedeboe, and Per Thommesen. Bone scintigraphy in the evaluation of fracture of the carpal

scaphoid bone. Acta Orthopaedica Scandinavica, 54(2):303–306, 1983.

[43] FJP Beeres, SJ Rhemrev, P Den Hollander, LM Kingma, SAG Meylaerts, S Le Cessie, KA Bartlema, JF Ham-

ming, and M Hogervorst. Early magnetic resonance imaging compared with bone scintigraphy in suspected

scaphoid fractures. Bone & Joint Journal, 90(9):1205–1209, 2008.

240

Page 5: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

[44] Andele de Zwart, Steven J Rhemrev, Sven AG Meylaerts, Jan-Willem Arndt, Inger B Schipper, Frank JP Beeres,

et al. Early ct compared with bone scintigraphy in suspected schapoid fractures. Clinical nuclear medicine, 37

(10):981, 2012.

[45] Ahmet Turan Ilica, Selahattin Ozyurek, Ozkan Kose, and Murat Durusu. Diagnostic accuracy of multidetector

computed tomography for patients with suspected scaphoid fractures and negative radiographic examinations.

Japanese journal of radiology, 29(2):98–103, 2011.

[46] PF O¡¯Carroll, J Doyle, and G Duffy. Radiography and scintigraphy in the diagnosis of carpal scaphoid fractures.

Irish journal of medical science, 151(1):211–213, 1982.

[47] A Stordahl, A Schjøth, G Woxholt, and H Fjermeros. Bone scanning of fractures of the scaphoid. The Journal

of Hand Surgery: British & European Volume, 9(2):189–190, 1984.

[48] MMC Tiel-van Buul, W Roolker, BWB Verbeeten, and AH Broekhuizen. Magnetic resonance imaging versus

bone scintigraphy in suspected scaphoid fracture. European journal of nuclear medicine, 23(8):971–975, 1996.

[49] D Lepage, L Obert, P Garbuio, Y Tropet, B Paratte, M Runge, J Verdenet, and JC Cardot. Contribution of

quantitative radio-scintigraphy to diagnosis of wrist injuries undetected on plain films: a prospective study of

154 cases. Revue de chirurgie orthopedique et reparatrice de l’appareil moteur, 90(6):542–549, 2004.

[50] Marcello Di Nisio, Alessandro Squizzato, Anne WS Rutjes, Harry R Büller, Aeilko H Zwinderman, and

Patrick MM Bossuyt. Diagnostic accuracy of d-dimer test for exclusion of venous thromboembolism: a system-

atic review. Journal of thrombosis and haemostasis, 5(2):296–304, 2007.

[51] Afina S Glas, Daphne Roos, Marije Deutekom, Aeilko H Zwinderman, Patrick MM Bossuyt, and Karl H Kurth.

Tumor markers in the diagnosis of primary bladder cancer. a systematic review. The Journal of urology, 169(6):

1975–1982, 2003.

[52] Sinan Sözen, Hasan Biri, Zafer Sınık, Bora Küpeli, Turgut Alkibay, and Ibrahim Bozkırlı. Comparison of

the nuclear matrix protein 22 with voided urine cytology and bta stat test in the diagnosis of transitional cell

carcinoma of the bladder. European urology, 36(3):225–229, 1999.

[53] Mariska MG Leeflang, Jonathan J Deeks, Yemisi Takwoingi, and Petra Macaskill. Cochrane diagnostic test

accuracy reviews. Systematic reviews, 2(1):82, 2013.

[54] Mariska MG Leeflang, Jonathan J Deeks, Constantine Gatsonis, and Patrick MM Bossuyt. Systematic reviews

of diagnostic test accuracy. Annals of internal medicine, 149(12):889–897, 2008.

[55] Tianjing Li, Milo A Puhan, Swaroop S Vedula, Sonal Singh, and Kay Dickersin. Network meta-analysis-highly

attractive but more methodological research is needed. BMC medicine, 9(1):79, 2011.

[56] Johannes B Reitsma, Afina S Glas, Anne WS Rutjes, Rob JPM Scholten, Patrick M Bossuyt, and Aeilko H Zwin-

derman. Bivariate analysis of sensitivity and specificity produces informative summary measures in diagnostic

reviews. Journal of clinical epidemiology, 58(10):982–990, 2005.

[57] Shandra Bipat, Aeilko H Zwinderman, Patrick MM Bossuyt, and Jaap Stoker. Multivariate random-effects

approach: for meta-analysis of cancer staging studies. Academic radiology, 14(8):974–984, 2007.

241

Page 6: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

[58] Taye H Hamza, Lidia R Arends, Hans C van Houwelingen, and Theo Stijnen. Multivariate random effects

meta-analysis of diagnostic tests with multiple thresholds. BMC medical research methodology, 9(1):73, 2009.

[59] Thomas A Trikalinos, David C Hoaglin, Kevin M Small, Norma Terrin, and Christopher H Schmid. Methods

for the joint meta-analysis of multiple tests. Research synthesis methods, 5(4):294–312, 2014.

[60] SG Kou and Z Ying. Asymptotics for a 2× 2 table with fixed margins. Statistica Sinica, pages 809–829, 1996.

[61] David Lunn, David Spiegelhalter, Andrew Thomas, and Nicky Best. The bugs project: evolution, critique and

future directions. Statistics in medicine, 28(25):3049–3067, 2009.

[62] Stephen P Brooks and Andrew Gelman. General methods for monitoring convergence of iterative simulations.

Journal of computational and graphical statistics, 7(4):434–455, 1998.

[63] M Plummer. Jags: Just another gibbs sampler v. 3.3. 0, 2012.

[64] Thomas Lumley. Network meta-analysis for indirect treatment comparisons. Statistics in medicine, 21(16):

2313–2324, 2002.

[65] Tullio Palmerini, Giuseppe Biondi-Zoccai, Diego Della Riva, Christoph Stettler, Diego Sangiorgi, Fabrizio

D’Ascenzo, Takeshi Kimura, Carlo Briguori, Manel Sabatè, Hyo-Soo Kim, et al. Stent thrombosis with drug-

eluting and bare-metal stents: evidence from a comprehensive network meta-analysis. The Lancet, 379(9824):

1393–1402, 2012.

[66] Fujian Song, Tengbin Xiong, Sheetal Parekh-Bhurke, Yoon K Loke, Alex J Sutton, Alison J Eastwood, Richard

Holland, Yen-Fu Chen, Anne-Marie Glenny, Jonathan J Deeks, et al. Inconsistency between direct and indirect

comparisons of competing interventions: meta-epidemiological study. Bmj, 343:d4909, 2011.

[67] Rutjes AWS Zwinderman AH Leeflang MMG, Di Nisio M and Bossuyt PMM. Adjusting for indirectness in

comparative test accuracy meta-analyses. 19th Cochrane Colloquium, 2011.

[68] Kimiko A Broeze, Brent C Opmeer, Fulco Van der Veen, Patrick M Bossuyt, Siladitya Bhattacharya, and

Ben WJ Mol. Individual patient data meta-analysis: a promising approach for evidence synthesis in reproductive

medicine, 2010.

[69] Simone L Broer, Madeleine Dólleman, Jeroen van Disseldorp, Kimiko A Broeze, Brent C Opmeer, Patrick MM

Bossuyt, Martinus JC Eijkemans, Ben Willem Mol, Frank JM Broekmans, IPD-Export Study Group, et al.

Prediction of an excessive response in in vitro fertilization from patient characteristics and ovarian reserve tests

and comparison in subgroups: an individual patient data meta-analysis. Fertility and sterility, 100(2):420–429,

2013.

[70] Padma Rekah Jirge. Ovarian reserve tests. Journal of human reproductive sciences, 4(3):108, 2011.

[71] Simone L Broer, Jeroen van Disseldorp, Kimiko A Broeze, Madeleine Dolleman, Brent C Opmeer, Patrick

Bossuyt, Marinus JC Eijkemans, Ben-Willem J Mol, Frank JM Broekmans, IMPORT Study Group, et al. Added

value of ovarian reserve testing on patient characteristics in the prediction of ovarian response and ongoing

pregnancy: an individual patient data approach. Human reproduction update, 19(1):26–36, 2013.

242

Page 7: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

[72] Patrick M Bossuyt, Johannes B Reitsma, David E Bruns, Constantine A Gatsonis, Paul P Glasziou, Les M Irwig,

Jeroen G Lijmer, David Moher, Drummond Rennie, and Henrica CW De Vet. Towards complete and accurate

reporting of studies of diagnostic accuracy: the stard initiative. Clinical chemistry and laboratory medicine, 41

(1):68–73, 2003.

[73] Kimiko A Broeze, Brent C Opmeer, Lucas M Bachmann, Frank J Broekmans, Patrick MM Bossuyt, Sjors FPJ

Coppus, Neil P Johnson, Khalid S Khan, Gerben ter Riet, Fulco van der Veen, et al. Individual patient data

meta-analysis of diagnostic and prognostic studies in obstetrics, gynaecology and reproductive medicine. BMC

medical research methodology, 9(1):22, 2009.

[74] Holly Janes and Margaret S Pepe. Adjusting for covariates in studies of diagnostic, screening, or prognostic

markers: an old concept in a new setting. American Journal of Epidemiology, 168(1):89–97, 2008.

[75] Methodological issues of confounding in analytical epidemiologic studies.

[76] Wendy Leisenring, Margaret Sullivan Pepe, and Gary Longton. A marginal regression modelling framework for

evaluating medical diagnostic tests. Statistics in medicine, 16(11):1263–1281, 1997.

[77] Aeilko H Zwinderman and Patrick M Bossuyt. We should not pool diagnostic likelihood ratios in systematic

reviews. Statistics in medicine, 27(5):687–697, 2008.

[78] Margaret Pepe, Gary Longton, and Holly Janes. Estimation and comparison of receiver operating characteristic

curves. The Stata Journal, 9(1):1, 2009.

[79] Pepe MS Janes H, Longton G. Accommodating covariates in receiver operating characteristic analysis. Stata J,

9:17–39, 2009.

[80] Xavier Robin, Natacha Turck, Alexandre Hainard, Natalia Tiberti, Frédérique Lisacek, Jean-Charles Sanchez,

and Markus Müller. proc: an open-source package for r and s+ to analyze and compare roc curves. BMC

bioinformatics, 12(1):77, 2011.

[81] Simone L Broer, Ben Willem J Mol, Dave Hendriks, and Frank JM Broekmans. The role of antimullerian

hormone in prediction of outcome after ivf: comparison with the antral follicle count. Fertility and sterility, 91

(3):705–714, 2009.

[82] Enrique F Schisterman, Neil J Perkins, Aiyi Liu, and Howard Bondell. Optimal cut-point and its corresponding

youden index to discriminate individuals using pooled blood samples. Epidemiology, 16(1):73–81, 2005.

[83] László FJMM Bancsi, Frank JM Broekmans, Ben WJ Mol, J Dik F Habbema, Egbert R te Velde, et al. Perfor-

mance of basal follicle-stimulating hormone in the prediction of poor ovarian response and failure to become

pregnant after in vitro fertilization: a meta-analysis. Fertility and sterility, 79(5):1091–1100, 2003.

[84] Dave J Hendriks, Ben-Willem J Mol, László FJMM Bancsi, Egbert R te Velde, and Frank JM Broekmans. Antral

follicle count in the prediction of poor ovarian response and pregnancy after in vitro fertilization: a meta-analysis

and comparison with basal follicle-stimulating hormone level. Fertility and sterility, 83(2):291–301, 2005.

[85] A La Marca, G Sighinolfi, D Radi, C Argento, E Baraldi, A Carducci Artenisio, G Stabile, and A Volpe. Anti-

müllerian hormone (amh) as a predictive marker in assisted reproductive technology (art). Human reproduction

update, 16(2):113–130, 2009.

243

Page 8: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

[86] F Song, I Harvey, and R Lilford. Adjusted indirect comparison may be less biased than direct comparison for

evaluating new pharmaceutical interventions. Journal of clinical epidemiology, 61(5):455–463, 2008.

[87] Patrick M Bossuyt, Les Irwig, Jonathan Craig, and Paul Glasziou. Diagnosis: Comparative accuracy: assessing

new tests against existing diagnostic pathways. BMJ: British Medical Journal, 332(7549):1089, 2006.

[88] Carolyn M Rutter and Constantine A Gatsonis. A hierarchical regression approach to meta-analysis of diagnostic

test accuracy evaluations. Statistics in medicine, 20(19):2865–2884, 2001.

[89] Haitao Chu and Stephen R Cole. Bivariate meta-analysis of sensitivity and specificity with sparse data: a

generalized linear mixed model approach. Journal of clinical epidemiology, 59(12):1331–1332, 2006.

[90] Roger M Harbord, Jonathan J Deeks, Matthias Egger, Penny Whiting, and Jonathan AC Sterne. A unification

of models for meta-analysis of diagnostic accuracy studies. Biostatistics, 8(2):239–251, 2006.

[91] SD Walter. Properties of the summary receiver operating characteristic (sroc) curve for diagnostic test data.

Statistics in medicine, 21(9):1237–1256, 2002.

[92] Sarah K McGill, Evangelos Evangelou, John PA Ioannidis, Roy M Soetikno, and Tonya Kaltenbach. Narrow

band imaging to differentiate neoplastic and non-neoplastic colorectal polyps in real time: a meta-analysis of

diagnostic operating characteristics. Gut, pages gutjnl–2012, 2013.

[93] Hiroki Watanabe, Nobuyuki Horita, Yuji Shibata, Shintaro Minegishi, Erika Ota, and Takeshi Kaneko. Diagnostic

test accuracy of d-dimer for acute aortic syndrome: systematic review and meta-analysis of 22 studies with 5000

subjects. Scientific reports, 6, 2016.

[94] Zhe Shen, Stefan Munker, Boyan Zhou, Lin Li, Chaohui Yu, and Youming Li. The accuracies of diagnosing

pancreas divisum by magnetic resonance cholangiopancreatography and endoscopic ultrasound: A systematic

review and meta-analysis. Scientific reports, 6, 2016.

[95] Yuanyuan Li, Yu Chen, and Ying Zhao. The diagnostic value of the fib-4 index for staging hepatitis b-related

fibrosis: a meta-analysis. PloS one, 9(8):e105728, 2014.

[96] Vicente Martínez-Vizcaíno, Iván Cavero-Redondo, Celia Álvarez-Bueno, and Fernando Rodríguez-Artalejo.

The accuracy of diagnostic methods for diabetic retinopathy: A systematic review and meta-analysis. PloS one,

11(4):e0154411, 2016.

[97] Javier Zamora, Victor Abraira, Alfonso Muriel, Khalid Khan, and Arri Coomarasamy. Meta-disc: a software

for meta-analysis of test accuracy data. BMC medical research methodology, 6(1):31, 2006.

[98] BA Dwamena, R Sylvester, and RC Carlos. midas: Meta-analysis of diagnostic accuracy studies. Available

at:)(Accessed on February 8, 2017) http://fmwww. bc. edu/repec/bocode/m/midas. pdf View in Article, 2009.

[99] Philipp Doebler and Heinz Holling. Meta-analysis of diagnostic accuracy with mada. Reterieved at: https://cran.

rproject. org/web/packages/mada/vignettes/mada. pdf, 2015.

[100] Lincoln E Moses, David Shapiro, and Benjamin Littenberg. Combining independent studies of a diagnostic test

into a summary roc curve: data-analytic approaches and some additional considerations. Statistics in medicine,

12(14):1293–1316, 1993.

244

Page 9: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

[101] Thomas A Lasko, Jui G Bhagwat, Kelly H Zou, and Lucila Ohno-Machado. The use of receiver operating

characteristic curves in biomedical informatics. Journal of biomedical informatics, 38(5):404–415, 2005.

[102] David G Kleinbaum and Mitchel Klein. Introduction to logistic regression. In Logistic regression. Springer,

2010.

[103] Richard D Riley, Yemisi Takwoingi, Thomas Trikalinos, Apratim Guha, Atanu Biswas, Joie Ensor, R Katie

Morris, and Jonathan J Deeks. Meta-analysis of test accuracy studies with multiple and missing thresholds: a

multivariate-normal model. J Biomed Biostat, 5:196, 2014.

[104] R Core Team. R: A language and environment for statistical computing. vienna, austria: R foundation for

statistical computing; 2014, 2014.

[105] William J Youden. Index for rating diagnostic tests. Cancer, 3(1):32–35, 1950.

[106] Xiao H Zhou. Empirical bayes combination of estimated areas under roc curves using estimating equations.

Medical Decision Making, 16(1):24–28, 1996.

[107] Guido Schwarzer. Meta: An r package for meta-analysis. R news, 7(3):40–45, 2007.

[108] Susanne Steinhauser, Martin Schumacher, and Gerta Rücker. Modelling multiple thresholds in meta-analysis of

diagnostic test accuracy studies. BMC medical research methodology, 16(1):97, 2016.

[109] SD Walter. The partial area under the summary roc curve. Statistics in medicine, 24(13):2025–2040, 2005.

[110] Kate D Williamson and Roger W Chapman. Primary sclerosing cholangitis. Digestive Diseases, 32(4):438–445,

2014.

[111] Gideon M Hirschfield, Tom H Karlsen, Keith D Lindor, and David H Adams. Primary sclerosing cholangitis.

The Lancet, 382(9904):1587–1599, 2013.

[112] Kirsten Boonstra, Rinse K Weersma, Karel J Erpecum, Erik A Rauws, BW Spanier, Alexander C Poen, Karin M

Nieuwkerk, Joost P Drenth, Ben J Witteman, Hans A Tuynman, et al. Population-based epidemiology, malig-

nancy risk, and outcome of primary sclerosing cholangitis. Hepatology, 58(6):2045–2055, 2013.

[113] Susan N Cullen and Roger W Chapman. The medical management of primary sclerosing cholangitis. In Seminars

in liver disease, volume 26, pages 052–061. Copyright© 2006 by Thieme Medical Publishers, Inc., 333 Seventh

Avenue, New York, NY 10001, USA., 2006.

[114] TH Karlsen, M Vesterhus, and KM Boberg. Controversies in the management of primary biliary cirrhosis and

primary sclerosing cholangitis. Alimentary pharmacology & therapeutics, 39(3):282–301, 2014.

[115] Albert Parés, Llorenç Caballería, and Juan Rodés. Excellent long-term survival in patients with primary biliary

cirrhosis and biochemical response to ursodeoxycholic acid. Gastroenterology, 130(3):715–720, 2006.

[116] Christophe Corpechot, Ludovico Abenavoli, Nabila Rabahi, Yves Chrétien, Tony Andréani, Catherine Johanet,

Olivier Chazouillères, and Raoul Poupon. Biochemical response to ursodeoxycholic acid and long-term prog-

nosis in primary biliary cirrhosis. Hepatology, 48(3):871–877, 2008.

245

Page 10: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

[117] Edith MM Kuiper, Bettina E Hansen, Richard A de Vries, Jannie W den Ouden-Muller, Theo JM Van Ditzhuijsen,

Els B Haagsma, Martin HMG Houben, Ben JM Witteman, Karel J van Erpecum, Henk R van Buuren, et al.

Improved prognosis of patients with primary biliary cirrhosis that have a biochemical response to ursodeoxycholic

acid. Gastroenterology, 136(4):1281–1287, 2009.

[118] Willem J Lammers, Henk R Van Buuren, Gideon M Hirschfield, Harry LA Janssen, Pietro Invernizzi, Andrew L

Mason, Cyriel Y Ponsioen, Annarosa Floreani, Christophe Corpechot, Marlyn J Mayo, et al. Levels of alkaline

phosphatase and bilirubin are surrogate end points of outcomes of patients with primary biliary cirrhosis: an

international follow-up study. Gastroenterology, 147(6):1338–1349, 2014.

[119] Roger Chapman, Johan Fevery, Anthony Kalloo, David M Nagorney, Kirsten Muri Boberg, Benjamin Shneider,

and Gregory J Gores. Diagnosis and management of primary sclerosing cholangitis. Hepatology, 51(2):660–678,

2010.

[120] Raoul Poupon. Liver alkaline phosphatase: a missing link between choleresis and biliary inflammation. Hepa-

tology, 61(6):2080–2090, 2015.

[121] Peter P Stanich, Einar Björnsson, Andrea A Gossard, Felicity Enders, Roberta Jorgensen, and Keith D Lin-

dor. Alkaline phosphatase normalization is associated with better prognosis in primary sclerosing cholangitis.

Digestive and liver disease, 43(4):309–313, 2011.

[122] Said Al Mamari, Jelena Djordjevic, John S Halliday, and Roger W Chapman. Improvement of serum alkaline

phosphatase to< 1.5 upper limit of normal predicts better outcome and reduced risk of cholangiocarcinoma in

primary sclerosing cholangitis. Journal of hepatology, 58(2):329–334, 2013.

[123] Lina Lindström, Rolf Hultcrantz, Kirsten Muri Boberg, Ingalill Friis-Liby, and Annika Bergquist. Association

between reduced levels of alkaline phosphatase and survival times of patients with primary sclerosing cholangitis.

Clinical Gastroenterology and Hepatology, 11(7):841–846, 2013.

[124] C Rupp, A Rössler, E Halibasic, P Sauer, K-H Weiss, K Friedrich, A Wannhoff, A Stiehl, W Stremmel, M Trauner,

et al. Reduction in alkaline phosphatase is associated with longer survival in primary sclerosing cholangitis,

independent of dominant stenosis. Alimentary pharmacology & therapeutics, 40(11-12):1292–1301, 2014.

[125] Hajime Uno, Tianxi Cai, Lu Tian, and LJ Wei. Evaluating prediction rules for t-year survivors with censored

regression models. Journal of the American Statistical Association, 102(478):527–537, 2007.

[126] Frank E Harrell, Kerry L Lee, and Daniel B Mark. Multivariable prognostic models: issues in developing

models, evaluating assumptions and adequacy, and measuring and reducing errors. Statistics in medicine, 15(4):

361–387, 1996.

[127] Kirsten Boonstra, Ulrich Beuers, and Cyriel Y Ponsioen. Epidemiology of primary sclerosing cholangitis and

primary biliary cirrhosis: a systematic review. Journal of hepatology, 56(5):1181–1188, 2012.

[128] Douglas G Altman, Berthold Lausen, Willi Sauerbrei, and Martin Schumacher. Dangers of using ¡°optimal¡±

cutpoints in the evaluation of prognostic factors. JNCI: Journal of the National Cancer Institute, 86(11):829–835,

1994.

246

Page 11: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

[129] Petra Buettner, Claus Garbe, and Irene Guggenmoos-Holzmann. Problems in defining cutoff points of continuous

prognostic factors: example of tumor thickness in primary cutaneous melanoma. Journal of clinical epidemiology,

50(11):1201–1210, 1997.

[130] Elisabeth MG de Vries, Joanne Verheij, Stefan G Hubscher, Mariska MG Leeflang, Kirsten Boonstra, Ulrich

Beuers, and Cyriel Y Ponsioen. Applicability and prognostic value of histologic scoring systems in primary

sclerosing cholangitis. Journal of hepatology, 63(5):1212–1219, 2015.

[131] Cyriel Y Ponsioen, Roger W Chapman, Olivier Chazouillères, Gideon M Hirschfield, Tom H Karlsen, Ansgar W

Lohse, Massimo Pinzani, Erik Schrumpf, Michael Trauner, and Gregory J Gores. Surrogate endpoints for clinical

trials in primary sclerosing cholangitis: Review and results from an international psc study group consensus

process. Hepatology, 63(4):1357–1367, 2016.

[132] Thomas R Fleming and John H Powers. Biomarkers and surrogate endpoints in clinical trials. Statistics in

medicine, 31(25):2973–2984, 2012.

[133] Tom H Karlsen and Kirsten Muri Boberg. Update on primary sclerosing cholangitis. Journal of hepatology, 59

(3):571–582, 2013.

[134] Russell H Wiesner, Patricia M Grambsch, E Rolland Dickson, Jurgen Ludwig, Robert L Maccarty, Ellen B

Hunter, Thomas R Fleming, Lloyd D Fisher, Sandra J Beaver, and Nicholas F Larusso. Primary sclerosing

cholangitis: natural history, prognostic factors and survival analysis. Hepatology, 10(4):430–436, 1989.

[135] J Mark Farrant, Karen M Hayllar, Mark L Wilkinson, John Karani, Bernard C Portmann, David Westaby, and

Roger Williams. Natural history and prognostic variables in primary sclerosing cholangitis. Gastroenterology,

100(6):1710–1717, 1991.

[136] E Rolland Dickson, Paul A Murtaugh, Russell H Wiesner, Patricia M Grambsch, Thomas R Fleming, Jurgen

Ludwig, Nicholas F LaRusso, Michael Malinchoc, Roger W Chapman, Marshall M Kaplan, et al. Primary

sclerosing cholangitis: refinement and validation of survival models. Gastroenterology, 103(6):1893–1901,

1992.

[137] U Broome, R Olsson, L Lööf, G Bodemar, R Hultcrantz, A ? Danielsson, H Prytz, H Sandberg-Gertzen,

S Wallerstedt, and G Lindberg. Natural history and prognostic factors in 305 swedish patients with primary

sclerosing cholangitis. Gut, 38(4):610–615, 1996.

[138] W Ray Kim, Terry M Therneau, Russell H Wiesner, John J Poterucha, Joanne T Benson, Michael Malinchoc,

Nicholas F Larusso, Keith D Lindor, and E Rolland Dickson. A revised natural history model for primary

sclerosing cholangitis. In Mayo Clinic Proceedings, volume 75, pages 688–694. Elsevier, 2000.

[139] Kirsten Muri Boberg, Giuseppe Rocca, Thore Egeland, Annika Bergquist, Ulrika Broomé, Llorenc Caballeria,

Roger Chapman, Rolf Hultcrantz, Stephen Mitchell, Albert Pares, et al. Time-dependent cox regression model

is superior in prediction of prognosis in primary sclerosing cholangitis. Hepatology, 35(3):652–657, 2002.

[140] CY Ponsioen, SME Vrouenraets, W Prawirodirdjo, R Rajaram, EAJ Rauws, CJJ Mulder, JB Reitsma, SH Heis-

terkamp, and GNJ Tytgat. Natural history of primary sclerosing cholangitis and prognostic value of cholangiog-

raphy in a dutch population. Gut, 51(4):562–566, 2002.

247

Page 12: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

[141] Jens JW Tischendorf, Hartmut Hecker, Martin Krüger, Michael P Manns, and Peter N Meier. Characterization,

outcome, and prognosis in 273 patients with primary sclerosing cholangitis: a single center study. The American

journal of gastroenterology, 102(1):107, 2007.

[142] CY Ponsioen, JB Reitsma, KM Boberg, L Aabakken, EAJ Rauws, and E Schrumpf. Validation of a cholangio-

graphic prognostic model in primary sclerosing cholangitis. Endoscopy, 42(09):742–747, 2010.

[143] Ulrich Beuers, Ulrich Spengler, Wolfgang Kruis, Baldur Wiebecke, Walter Heldwein, Marlene Weinzierl, Gerd R

Pape, Tilman Sauerbruch, Gustav Paumgartner, et al. Ursodeoxycholic acid for treatment of primary sclerosing

cholangitis: A placebo-controlled trial. Hepatology, 16(3):707–714, 1992.

[144] Keith D Lindor. Ursodiol for primary sclerosing cholangitis. New England Journal of Medicine, 336(10):

691–695, 1997.

[145] Stephen A Mitchell, Davinder S Bansi, Nicholas Hunt, Klaus Von Bergmann, Kenneth A Fleming, and Roger W

Chapman. A preliminary trial of high-dose ursodeoxycholic acid in primary sclerosing cholangitis. Gastroen-

terology, 121(4):900–907, 2001.

[146] European Association For The Study Of The Liver et al. Easl clinical practice guidelines: management of

cholestatic liver diseases. Journal of hepatology, 51(2):237–267, 2009.

[147] Elke M Hennes, Mikio Zeniya, Albert Czaja, Albert Parés, George N Dalekos, Edward L Krawitt, Paulo L Bit-

tencourt, Gilda Porta, Kirsten M Boberg, Harald Hofer, et al. Simplified criteria for the diagnosis of autoimmune

hepatitis. Hepatology, 48(1):169–176, 2008.

[148] JE Lennard. Classification of inflammatory bowel disease. Scandinavian Journal of Gastroenterology, 24

(sup170):2–6, 1989.

[149] Stef Buuren and Karin Groothuis-Oudshoorn. mice: Multivariate imputation by chained equations in r. Journal

of statistical software, 45(3), 2011.

[150] Noah Simon, Jerome Friedman, Trevor Hastie, and Rob Tibshirani. Regularization paths for cox¡¯s proportional

hazards model via coordinate descent. Journal of statistical software, 39(5):1, 2011.

[151] Patrick Royston and Douglas G Altman. External validation of a cox prognostic model: principles and methods.

BMC medical research methodology, 13(1):33, 2013.

[152] Donald B Rubin. Multiple imputation for nonresponse in surveys, volume 81. John Wiley & Sons, 2004.

[153] Andrea Marshall, Douglas G Altman, Roger L Holder, and Patrick Royston. Combining estimates of interest in

prognostic modelling studies after multiple imputation: current practice and guidelines. BMC medical research

methodology, 9(1):57, 2009.

[154] Ewout W Steyerberg and Yvonne Vergouwe. Towards better clinical prediction models: seven steps for devel-

opment and an abcd for validation. European heart journal, 35(29):1925–1931, 2014.

[155] Karel GM Moons, Douglas G Altman, Johannes B Reitsma, John PA Ioannidis, Petra Macaskill, Ewout W

Steyerberg, Andrew J Vickers, David F Ransohoff, and Gary S Collins. Transparent reporting of a multivariable

prediction model for individual prognosis or diagnosis (tripod): Explanation and elaborationthe tripod statement:

explanation and elaboration. Annals of internal medicine, 162(1):W1–W73, 2015.

248

Page 13: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

[156] Tobias J Weismüller, Palak J Trivedi, Annika Bergquist, Mohamad Imam, Henrike Lenzen, Cyriel Y Ponsioen,

Kristian Holm, Daniel Gotthardt, Martti A Färkkilä, Hanns-Ulrich Marschall, et al. Patient age, sex, and

inflammatory bowel disease phenotype associate with course of primary sclerosing cholangitis. Gastroenterology,

152(8):1975–1984, 2017.

[157] Elisabeth MG Vries, Junfeng Wang, Mariska MG Leeflang, Kirsten Boonstra, Rinse K Weersma, Ulrich H

Beuers, Ronald B Geskus, and Cyriel Y Ponsioen. Alkaline phosphatase at diagnosis of primary sclerosing

cholangitis and 1 year later: evaluation of prognostic value. Liver International, 36(12):1867–1875, 2016.

[158] Hans C van Houwelingen. Validation, calibration, revision and combination of prognostic survival models.

Statistics in medicine, 19(24):3401–3415, 2000.

[159] Michael Economou and Georgios Pappas. New global map of crohn’s disease: Genetic, environmental, and

socioeconomic correlations. Inflammatory bowel diseases, 14(5):709–720, 2008.

[160] TM Neri, GM Cavestro, P Seghini, PF Zanelli, A Zanetti, M Savi, M Podda, M Zuin, M Colombo, A Floreani,

et al. Novel association of hla-haplotypes with primary sclerosing cholangitis (psc) in a southern european

population. Digestive and liver disease, 35(8):571–576, 2003.

[161] A Spurkland, S Saarinen, KM Boberg, S Mitchell, U Broome, L Caballeria, E Ciusani, R Chapman, G Ercilla,

O Fausa, et al. Hla class ii haplotypes in primary sclerosing cholangitis patients from five european populations.

HLA, 53(5):459–469, 1999.

[162] PL Bittencourt, SA Palacios, ELR Cançado, FJ Carrilho, G Porta, J Kalil, and AC Goldberg. Susceptibility to

primary sclerosing cholangitis in brazil is associated with hla-drb1* 13 but not with tumour necrosis factor α-

308 promoter polymorphism. Gut, 51(4):609–610, 2002.

[163] Jonathan AC Sterne, Ian R White, John B Carlin, Michael Spratt, Patrick Royston, Michael G Kenward, Angela M

Wood, and James R Carpenter. Multiple imputation for missing data in epidemiological and clinical research:

potential and pitfalls. Bmj, 338:b2393, 2009.

[164] Ian R White, Patrick Royston, and Angela M Wood. Multiple imputation using chained equations: issues and

guidance for practice. Statistics in medicine, 30(4):377–399, 2011.

[165] Luijk R. The group lasso in the proportional hazards model with an application to multiply imputed high-

dimensional data.

[166] Y Wan, S Datta, DJ Conklin, and M Kong. Variable selection models based on multiple imputation with an

application for predicting median effective dose and maximum effect. Journal of statistical computation and

simulation, 85(9):1902–1916, 2015.

[167] Kim Solez, Flavio Vincenti, and Ronald S Filo. Histopathologic findings from 2-year protocol biopsies from a

us multicenter kidney transplant trial comparing tacrolimus versus cyclosporine: a report of the fk506 kidney

transplant study group1, 2, 7. Transplantation, 66(12):1736–1740, 1998.

[168] F Moreso, M Ibernon, M Goma, M Carrera, X Fulladosa, M Hueso, S Gil-Vernet, JM Cruzado, J Torras,

JM Grinyó, et al. Subclinical rejection associated with chronic allograft nephropathy in protocol biopsies as a

risk factor for late graft loss. American Journal of Transplantation, 6(4):747–752, 2006.

249

Page 14: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

[169] Francesc Moreso, Marta Carrera, Montse Goma, Miguel Hueso, Joana Sellares, Jaume Martorell, Josep M

Grinyó, and Daniel Serón. Early subclinical rejection as a risk factor for late chronic humoral rejection. Trans-

plantation, 93(1):41–46, 2012.

[170] David Rush, Peter Nickerson, James Gough, Rachel McKenna, Paul Grimm, Mary Cheang, Kiril Trpkov, Kim

Solez, and John Jeffery. Beneficial effects of treatment of early subclinical rejection: a randomized study. Journal

of the American Society of Nephrology, 9(11):2129–2134, 1998.

[171] J Kurtkoti, V Sakhuja, K Sud, M Minz, R Nada, HS Kohli, KL Gupta, K Joshi, and V Jha. The utility of 1-and

3-month protocol biopsies on renal allograft function: A randomized controlled study. American Journal of

Transplantation, 8(2):317–323, 2008.

[172] Mathijs van de Vrie, Jeroen K Deegens, Johan van der Vlag, and Luuk B Hilbrands. Effect of long-term storage

of urine samples on measurement of kidney injury molecule 1 (kim-1) and neutrophil gelatinase-associated

lipocalin (ngal). American Journal of Kidney Diseases, 63(4):573–576, 2014.

[173] Chirag R Parikh, Isabel Butrymowicz, Angela Yu, Vernon M Chinchilli, Meyeon Park, Chi-yuan Hsu, W Brian

Reeves, Prasad Devarajan, Paul L Kimmel, Edward D Siew, et al. Urine stability studies for novel biomarkers

of acute kidney injury. American Journal of Kidney Diseases, 63(4):567–572, 2014.

[174] Ferdau L Nauta, Stephan JL Bakker, Hiddo Lambers Heerspink, Dick de Zeeuw, Wim van Oeveren, Henk Bilo,

Paul E de Jong, and Ron T Gansevoort. Effect of frozen storage on urinary concentration of kidney damage

markers. American Journal of Kidney Diseases, 59(4):586–589, 2012.

[175] Ingrid Masson, Martin Flamant, Nicolas Maillard, Andrew D Rule, François Vrtovsnik, Marie-Noëlle Peraldi,

Lise Thibaudin, Etienne Cavalier, Emmanuelle Vidal-Petiot, Christine Bonneau, et al. Mdrd versus ckd-epi

equation to estimate glomerular filtration rate in kidney transplant recipients. Transplantation, 95(10):1211–

1217, 2013.

[176] Vanji Karthikeyan, Jolanta Karpinski, Rama C Nair, and Greg Knoll. The burden of chronic kidney disease in

renal transplant recipients. American Journal of Transplantation, 4(2):262–269, 2004.

[177] Patrick J Heagerty, Thomas Lumley, and Margaret S Pepe. Time-dependent roc curves for censored survival

data and a diagnostic marker. Biometrics, 56(2):337–344, 2000.

[178] Ian R White and Eleni Rapsomaniki. Covariate-adjusted measures of discrimination for survival data. Biometrical

Journal, 57(4):592–613, 2015.

[179] Hatem Amer and Fernando G Cosio. Significance and management of proteinuria in kidney transplant recipients.

Journal of the American Society of Nephrology, 20(12):2490–2492, 2009.

[180] Jean-Michel Halimi. Low-grade proteinuria and microalbuminuria in renal transplantation. Transplantation, 96

(2):121–130, 2013.

[181] Kathryn K Stevens, Rajan K Patel, Shona Methven, Marc J Clancy, Jonathan G Fox, Alan G Jardine, and Colin C

Geddes. Proteinuria and outcome after renal transplantation: ratios or fractions? Transplantation, 96(1):65–69,

2013.

250

Page 15: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

[182] O Schück, O Viklicky, L Voska, S Vítko, V Teplan, J Lácha, A Jabor, J Skibová, and M Stollová. Predicting the

grade of banff 97 classification of chronic allograft nephropathy based on examination of graft dysfunction (a

preliminary report). Annals of transplantation, 8(3):5–7, 2003.

[183] Ferdau L Nauta, Stephan JL Bakker, Wim van Oeveren, Gerjan Navis, Jaap J Homan van der Heide, Harry van

Goor, Paul E de Jong, and Ron T Gansevoort. Albuminuria, proteinuria, and novel urine biomarkers as predictors

of long-term allograft outcomes in kidney transplant recipients. American Journal of Kidney Diseases, 57(5):

733–743, 2011.

[184] Emilio Rodrigo, Juan C Ruiz, Gema Fernández-Fresnedo, Maria D Fernández, Celestino Piñera, Rosa Palomar,

Elena Monfá, Carlos Gómez-Alamillo, and Manuel Arias. Cystatin c and albuminuria as predictors of long-term

allograft outcomes in kidney transplant recipients. Clinical transplantation, 27(2), 2013.

[185] Norbert H Lameire, Raymond C Vanholder, and Wim A Van Biesen. How to use biomarkers efficiently in acute

kidney injury. Kidney international, 79(10):1047–1050, 2011.

[186] Robert G Fassett, Sree K Venuthurupalli, Glenda C Gobe, Jeff S Coombes, Matthew A Cooper, and Wendy E

Hoy. Biomarkers in chronic kidney disease: a review. Kidney international, 80(8):806–821, 2011.

[187] Mirjan M Van Timmeren, Vishal S Vaidya, Rutger M van Ree, Leendert H Oterdoom, Aiko PJ de Vries,

Reinold OB Gans, Harry van Goor, Coen A Stegeman, Joseph V Bonventre, and Stephan JL Bakker. High

urinary excretion of kidney injury molecule-1 is an independent predictor of graft loss in renal transplant

recipients. Transplantation, 84(12):1625, 2007.

[188] Charles J Ferro, James Hodson, Jason Moore, Mark McClure, Charles RV Tomson, Peter Nightingale, and

Richard Borrows. Bayesian analysis of glomerular filtration rate trajectories in kidney transplant recipients: a

pilot study. Transplantation, 99(3):533–539, 2015.

[189] Yohann Foucher, M Giral, JP Soulillou, and JP Daures. A flexible semi-markov model for interval-censored

data and goodness-of-fit testing. Statistical methods in medical research, 19(2):127–145, 2010.

[190] Yohann Foucher, Magali Giral, Jean-Paul Soulillou, and Jean-Pierre Daures. A semi-markov model for multistate

and interval-censored data with multiple terminal events. application in renal transplantation. Statistics in

medicine, 26(30):5381–5393, 2007.

[191] Leeflang MM. Adjusting for indirectness in comparative test accuracy meta-analyses. Methods for Evaluating

Medical Tests and Biomarkers Symposium 2016. Birmingham, UK., 2016.

[192] Xiaoye Ma. Statistical Methods for Multivariate Meta-Analysis of Diagnostic Tests. PhD thesis, University of

Minnesota, 2015.

[193] Joris Menten and Emmanuel Lesaffre. A general framework for comparative bayesian meta-analysis of diagnostic

studies. BMC medical research methodology, 15(1):70, 2015.

[194] Victoria N Nyaga, Marc Aerts, and Marc Arbyn. Anova model for network meta-analysis of diagnostic test

accuracy data. Statistical methods in medical research, page 0962280216669182, 2016.

[195] Leeflang MM Wang J. Individual patient data meta-analysis for diagnostic test accuracy studies: a review of

methods used in practice. 23st Cochrane Colloquium. Vienna, Austria., 2015.

251

Page 16: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

252

Page 17: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

Nederlandse samenvatting

Page 18: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European
Page 19: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

Dit proefschrift gaat over de evaluatie van medische tests en biomarkers, zowel

in origineel onderzoek als in systematisch literatuuronderzoek en meta-analyses. Het

beschrijft een aantal studies naar het onderscheidend vermogen van tests en merkers

en methodologische ontwikkelingen om dit type evaluaties verder te versterken.

Deel 1: Vergelijkende meta-analyse van diagnostische accu-ratesse

Bij de evaluatie van medische tests kan het gaan om de beoordeling van één enkele

test, of om een vergelijking van twee of meer tests. In hoofdstuk 2 brengen we verslag

uit van een systematisch literatuuronderzoek voor een vergelijking van diagnostische

tests. We hebben de accuratesse van drie indextests beoordeeld: computertomografie

(CT), beeldvorming op basis van magnetische resonantie (MRI) en botscintigrafie

(BS). Het klinisch probleem was het detecteren van klinische scaphoidfracturen bij

daarvan verdachte patiënten. Het systematische literatuuronderzoek omvatte zowel

studies die slechts één van de genoemde tests hadden geëvalueerd als studies die twee

tests hadden vergeleken in één en dezelfde groep patiënten en tegen één en dezelfde

referentiestandaard. Voor het maken van de uiteindelijke vergelijking werden alle

originele studies geanalyseerd, dus zowel de studies van de afzonderlijk tests als

de vergelijkende studies. We voerden daarna een gevoeligheidsanalyse uit, met

uitsluitend data uit vergelijkende studies, om na te gaan of zo’n meta-analyse met

enkel vergelijkende studies tot een ander antwoord zou leiden dan de hoofdanalyse.

De meta-analyses toonden aan dat BS een iets lagere specificiteit had, maar een veel

hogere sensitiviteit dan CT en MRI. Er werd geen bewijs gevonden voor een verschil

in accuratesse tussen CT en MRI.

In hoofdstuk 3 beschrijven we twee benaderingen voor het uitvoeren van een

vergelijkende meta-analyse van diagnostische tests. Elk van deze benaderingen

houdt rekening met de specifieke kenmerken van drie verschillende soorten studie:

studies van afzonderlijke tests, vergelijkende studies die data rapporteren voor de

255

Page 20: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

afzonderlijke tests, en vergelijkende studies die ook nog gegevens verschaffen over

de samenhang tussen de afzonderlijke indextests. De absolute accuratessebenadering

(armgebaseerd) schat eerst de gemiddelde diagnostische accuratesse van elke test

en berekent dan het verschil tussen de tests, terwijl de relatieve verschilbenader-

ing (contrastgebaseerd) eerst het verschil in accuratesse tussen diagnostische tests

berekent, in elke studie afzonderlijk, en vervolgens het gemiddelde verschil tussen

de tests schat. In beide benaderingen hebben we de testuitkomsten rechtstreeks

gemodelleerd met een multinomiale verdeling. Simulaties toonden aan dat beide

benaderingen vergelijkbare resultaten opleveren wanneer alleen data uit vergelijkend

onderzoek worden gebruikt. Het model kan worden uitgebreid met covariaten, en

ook meer dan twee tests analyseren.

Als er zowel evaluatiess van afzonderlijke tests te vinden zijn als vergelijkende

studies, rijst de vraag welke studies in een systematisch literatuuronderzoek moeten

worden betrokken: beide, of enkel de vergelijkende studies? Als we de vergelijking

willen maken op basis van afzonderlijke evaluaties is er sprake van een indirecte

vergelijking. In de studie die in hoofdstuk 4 staat beschreven onderzochten we het

verschil in resultaten tussen een meta-analyse van directe vergelijkingen versus een

meta-analyse van indirecte vergelijkingen. We deden dat met behulp van individuele

patiëntgegevens uit een aantal studies. Er zijn twee belangrijke bronnen van verteken-

ing in indirecte vergelijkingen: heterogeniteit in studieopzet, waarbij studies bij

voorbeeld een andere referentiestandaard kunnen hanteren, of een andere drempel, en

verschillen in patiëntenpopulaties. We hebben twee soorten aanpassingen voorgesteld

om te corrigeren voor de beschreven vertekeningen. Type I-aanpassingen waren

gericht op een drempeleffect en op problemen met de referentiestandaard, terwijl

Type II-aanpassingen aanvullend gericht waren op patiëntkenmerken (bijvoorbeeld

leeftijd). Deze aanpassingen bleken in onze analyse echter niet succesvol bij het

verwijderen van de vertekening uit indirecte vergelijkingen. Er bleef een verschil

bestaan tussen directe en indirecte vergelijkingen, zelfs na toepassing van deze

correcties.

256

Page 21: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

Hoofdstuk 5 bestudeert een ander aspect van meta-analyses van studies naar

de diagnostische accuratesse: de keuze van de uitkomstmaat. Bij systematisch

literatuuronderzoek wordt soms de oppervlakte onder de samenvattende ROC-curve

gerapporteerd, als maat voor de accuratesse van een test (area under the summary

ROC curve - AUSROC). Dat gebeurt nadat het bivariate model of het HSROC

model is gebruikt voor de feitelijke meta-analyse. In een simulatiestudie toonden

we aan dat het nagenoeg onmogelijk is om de juiste AUSROC te schatten vanuit een

meta-analyse van 2-bij-2 tabellen. De richting en de mate van vertekening kunnen

afhangen van de manier waarop de drempel werd bepaald in de primaire studies. De

AUSROC moet daarom niet gebruikt worden als een samenvattende maat voor de

diagnostische accuratesse van een test bij systematisch literatuuronderzoek.

Deel 2: De prognostische waarde van biomarkers en klinischevoorspelmodellen

In de studie die in hoofdstuk 6 staat beschreven evalueerden we het onderschei-

dend vermogen van alkalisch fosfatase (ALP), zowel bij de diagnose van primaire

scleroserende cholangitis als een jaar na de diagnose. In plaats van te kijken naar het

testresultaat als risicofactor in een Cox regressiemodel gebruikten we tijdsafhanke-

lijke C-maat om voorspellende waarde van ALP te beoordelen, zowel op de korte

termijn als op de lange termijn. Het onderscheidend vermogen van ALP op T0 en

op T1 en dat van de relatieve verandering werden vergeleken over de duur van de

follow-up. De optimale drempel werd bepaald op basis van de algemene C-grootheid.

We concluderen dat ALP op T1 beter presteert dan ALP op T0, maar er werd

geen formele statistische test uitgevoerd. De tijdafhankelijke C-grootheid leverde

slechts een indicatie van de prognostische waarde over de tijd. Als er geen specifiek

tijdstip van belang is, zou de vergelijking niet gebaseerd moeten worden op deze

tijdafhankelijke C-grootheid.

Ook hoofdstuk 7 gaat over de prognose van primaire scleroserende cholangitis.

257

Page 22: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

We ontwikkelden een prognostisch model op basis van meerdere biomarkers en

andere patiëntkenmerken. Er waren een groot aantal ontbrekende waarden voor

de biomarkers op het moment van diagnose, en sommige van de merkers werden

herhaaldelijk gemeten tijdens de follow-up. Het principe van meervoudige im-

putatie werd toegepast en voor verschillende typen variabelen kozen we andere

imputatiemodellen. We hebben alle datasets gecombineerd tot één grote dataset en

gebruikten de Lasso-techniek om de parameter voor sommige variabelen te laten

krimpen tot 0, waardoor ze uit het model werden gestoten. Lasso’s strafparameter

’lambda’ werd bepaald op basis van het onderscheidend vermogen van het model,

uitgedrukt als Harrell’s C-grootheid, met als rationale dat het uiteindelijke model een

klein aantal voorspellers moet bevatten, maar met een C-grootheid die niet meer dan

10% lager is dan die van het optimale model. De interne validatie werd geëntegreerd

in de ontwikkeling van het model, om zo te corrigeren voor het optimisme in de

C-grootheid. Het model werd extern gevalideerd met data die waren verzameld in een

ander cohort, uit Oxford. Een extra recalibratie werd uitgevoerd, om te compenseren

voor een teveel aan krimp. De recalibratie werd uitgevoerd op de prognostische

index, afgeleid van Lasso, maar niet op de geselecteerde variabelen, omdat we het

relatieve belang van alle variabelen wilden bewaren en de risico’s en de gevolgen

van overfitting en van een inflatie van parameters wilden vermijden.

Hoofdstuk 8 beschrijft soortgelijke analyses als die in hoofdstuk 6, maar dan

voor een andere aandoening, nierschade, en voor verscheidene biomarkers. De

prognostische waarde van een aantal merkers bij het voorspellen van chronische

nierschade werd geëvalueerd op basis van de tijdsafhankelijke C-grootheid. Een

nieuwe uitdaging in deze studie was het corrigeren voor de geschatte glomerulaire

filtratiesnelheid (eGFR) op baseline. We gebruikten een Cox-model met baseline

eGFR en met een C-grootheid die was gecorrigeerd voor deze eGFR, maar een

tijdafhankelijke C-grootheid die ook was gecorrigeerd voor deze variabele was niet

beschikbaar; het zou een onderwerp kunnen zijn voor verolgonderzoek. Zonder

deze grootheid is het niet goed mogelijk om de waarden van merkers bij patiënten in

258

Page 23: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

verschillende fasen, of met een verschillende baseline eGFR, te vergelijken. Een

patiënt in fase 1 kan een grotere kans hebben om te evolueren naar chronische

nierschade dan een patiënt met dezelfde waarde van de merker die zich in fase 2

bevindt. Een patiënt met een eGFR-waarde op baseline die zich bij de grenswaarde

bevindt loopt een groter risico op chronische nierschade.

De evaluatie van medische tests loopt achter op de evaluatie van geneesmiddelen

en die van andere medische interventies. De methoden voor het schatten van de

effectiviteit van biomarkers, van tests en van modellen op basis van meerdere

testresultaten en bevindingen zijn tot nu toe minder ver ontwikkeld; dat geldt zowel

voor origineel onderzoek als voor samenvattend onderzoek op basis van de medische

literatuur. Met het wetenschappelijk onderzoek dat in dit proefschrift staat beschreven

wilden we een bijdrage leveren aan de ontwikkeling van geschikte methoden, en aan

de toepassing ervan in klinisch relevante onderzoek. Daarmee kan de onderbouwing

voor het nemen van beslissingen over tests en teststrategieën worden versterkt, wat

uiteindelijk moet leiden tot betere uitkomsten voor de betrokken patiënten, en tot

een efficiëntere zorg.

259

Page 24: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

260

Page 25: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

List of contributing authors

Page 26: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European
Page 27: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

Fréderike J BemelmanDivision of Internal Medicine, Renal Transplant Unit and Academic Medical Center

University of Amsterdam, Amsterdam, the Netherlands

Ulrich H BeuersDepartment of Gastroenterology and Hepatology, Academic Medical Center

University of Amsterdam, Amsterdam, the Netherlands

Kirsten BoonstraDepartment of Gastroenterology and Hepatology, Academic Medical Center

University of Amsterdam, Amsterdam, the Netherlands

Patrick MM BossuytDepartment of Clinical Epidemiology, Biostatistics & Bioinformatics, Amsterdam

Public Health research institute, Academic Medical Center

University of Amsterdam, Amsterdam, the Netherlands

Frank BroekmansDepartment of Reproductive Medicine

University Medical Center Utrecht, Utrecht, the Netherlands

Simone BroerDepartment of Reproductive Medicine

University Medical Center Utrecht, Utrecht, the Netherlands

Roger W ChapmanTranslational Gastroenterology Unit

John Radcliffe Hospital, Oxford, United Kingdom

Madeleine DollemanDepartment of Reproductive Medicine

University Medical Center Utrecht, Utrecht, the Netherlands

Job N DoornbergDepartment of Orthopaedic Surgery, Academic Medical Center

University of Amsterdam, Amsterdam, the Netherlands

263

Page 28: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

Sandrine FlorquinDepartment of Pathology, Academic Medical Center

University of Amsterdam, Amsterdam, the Netherlands

Ronald B GeskusDepartment of Clinical Epidemiology, Biostatistics & Bioinformatics, Amsterdam

Public Health research institute, Academic Medical Center

University of Amsterdam, Amsterdam, the Netherlands

Afina S GlasDepartment of Urology

Zaans Medical Center, Zaandam, the Netherlands

Jesper KersDepartment of Pathology, Academic Medical Center

University of Amsterdam, Amsterdam, the Netherlands

Peter KloenDepartment of Orthopaedic Surgery

Academic Medical Center, Amsterdam, the Netherlands

Mariska MG Leeflang, Department of Clinical Epidemiology, Biostatistics &

Bioinformatics, Amsterdam Public Health research institute, Academic Medical

Center

University of Amsterdam, Amsterdam, the Netherlands

Mario MaasDepartment of Radiology, Academic Medical Center

University of Amsterdam, Amsterdam, the Netherlands

Wouter H MalleeDepartment of Orthopaedic Surgery, Academic Medical Center

University of Amsterdam, Amsterdam, the Netherlands

Laura MeyerDivision of Internal Medicine, Renal Transplant Unit and Academic Medical Center

University of Amsterdam, Amsterdam, the Netherlands

264

Page 29: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

Ben Willem MolSchool of Paediatrics and Reproductive Health

University of Adelaide, Australia

Hessel Peters-SengersDivision of Internal Medicine, Renal Transplant Unit and Academic Medical Center

University of Amsterdam, Amsterdam, the Netherlands

Cyriel Y PonsioenDepartment of Gastroenterology and Hepatology, Academic Medical Center

University of Amsterdam, Amsterdam, the Netherlands

Rudolf W PoolmanDepartment of Orthopaedic Surgery

Onze Lieve Vrouwe Gasthuis, Amsterdam, the Netherlands

Henrica CW de VetDepartment of Epidemiology and Biostatistics, EMGO Institute for Health and Care

Research

VU University Medical Center, Amsterdam, the Netherlands

Elisabeth MG de VriesDepartment of Gastroenterology and Hepatology, Academic Medical Center

University of Amsterdam, Amsterdam, the Netherlands

Rinse K WeersmaDepartment of Gastroenterology and Hepatology

University Medical Center Groningen, Groningen, the Netherlands

Kate D WilliamsonTranslational Gastroenterology Unit

John Radcliffe Hospital, Oxford, United Kingdom

Aeilko H ZwindermanDepartment of Clinical Epidemiology, Biostatistics & Bioinformatics, Amsterdam

Public Health research institute, Academic Medical Center

University of Amsterdam, Amsterdam, the Netherlands

265

Page 30: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

266

Page 31: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

PhD portfolio

Page 32: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European
Page 33: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

Training

Courses in AMC graduate school

Courses YearThe AMC World of Science 2012

Practical Biostatistics 2013

Oral Presentation 2013

Systematic Reviews 2013

Evidence Based Searching 2013

Clinical Epidemiology 2013

Advanced Topics in Clinical Epidemiology 2014

Advanced Topics in Biostatistics 2014

Computing in R 2014

Data analysis in Matlab 2014

Courses in Johns Hopkins Bloomberg School of Public HealthSummer Institutes

Courses YearAnalysis of Longitudinal Data 2015

Multilevel Models 2015

Biostatistical Analysis of Epidemiologic Data III: Semi Parametric Methods 2015

Other courses

Courses YearSystematic Reviews of Diagnostic Test Accuracy for authors, Dutch Cochrane Centre,

Amsterdam, the Netherlands

2012

Missing Data in Clinical Trials, AISECT&EAR-BC, Beijing, China 2013

Evaluation of Accuracy of Medical Devices and Biomarkers, AISECT&EAR-BC, Beijing,

China

2013

Statistical Methods for Diagnostic Test Accuracy Reviews, Systematic Reviews of Diag-

nostic Test Accuracy for authors, MEMTB 2013, Birmingham, UK

2013

Author and Reviewer Workshop, European Journal of Radiology, Amsterdam, the Nether-

lands

2014

Splines, IBS Channel Network Conference 2015, Nijmegen, the Netherlands 2015

Weekly departmental seminars 2012-

2017

269

Page 34: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

Presentations

Conferences YearDirect and Indirect Comparisons in Comparative Systematic Reviews of Diagnostic Test

Accuracy Studies, MEMTB 2013, Birmingham, UK (Oral)

2013

Direct versus Indirect Comparisons in Systematic Reviews of Test Accuracy Studies: An

IPD Case Study in Ovarian Reserve Testing, 21st Cochrane Colloquium, Qu¨¦bec City,

Canada (Poster)

2013

Novel prognostic model for primary sclerosing cholangitis: the importance of including

biochemical values, Joint Workshop on "Nonparametric Analyses of complex time to event

data" of the GR-IBS working groups Nonparametric Methodsand Statistics of Stochastic

Processes, Ulm, Germany (Oral)

2014

Individual patient data meta-analysis for diagnostic test accuracy studies: a review of

methods used in practice, IBS channel conference 2015, Nijmegen, the Netherlands (Poster)

2015

Individual patient data meta-analysis for diagnostic test accuracy studies: a review of

methods used in practice, 23st Cochrane Colloquium, Vienna, Austria (Poster)

2015

Searching Chinese biomedical databases: current practice among Cochrane reviewers, 23st

Cochrane Colloquium, Vienna, Austria (Oral)

2015

All estimates of the Area Under the HSROC curve may be biased. A simulation study,

MEMTB 2016, Birmingham, UK (Poster)

2016

Comparative Meta-Analysis of Diagnostic Studies: a Review and Comparison of Currently

Proposed Approaches, ISCB 2017, Vigo, Spain (Poster)

2017

Awards

AMC Young Talent Fund 2015

Other activities

ISCB 2015 conference assistant 2015

Peer reviewer of the Cochrane Library, Diagnostic Test Accuracy Working Group 2013-

2017

270

Page 35: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

Other publications

Reporting Diagnostic Accuracy Studies: Some Improvements after 10 Yearsof STARDDaniël A Korevaar, Junfeng Wang, W Annefloor van Enst, Mariska M Leeflang,Lotty Hooft, Nynke Smidt, Patrick M M Bossuyt.Radiology 10/2014; 274(3)

The Statue Que and the Development of Systematic Review/Meta-Analysis ofTraditional Chinese Medicine in Past Nineteen YearsJiaying Wang, Junfeng Wang, Shiqi Cheng, Guihua Tian, Yanping Wang, HongcaiShang, Yongyan Wang.Journal of Traditional Chinese Medicine (Chinese Edition), 2017, Vol. 58, No. 11

Spin: The New Challenge of the Reporting of Chinese Medicine’s ClinicalEvidenceJiaying Wang, Junfeng Wang, Hongcai ShangWorld Chinese Medicine (Chinese Edition), June 2017, Vol.12, No. 6

Should we search Chinese biomedical databases when performing systematicreviews?Jérémie F. Cohen, Daniël A. Korevaar, Junfeng Wang, René Spijker and Patrick M.Bossuyt.Systematic Reviews (2015) 4:23

Meta-Epidemiologic Study Showed Frequent Time Trends in SummaryEstimates From Meta-Analyses of Diagnostic Accuracy Studies.Jérémie F. Cohen, Daniël A. Korevaar, Junfeng Wang, Mariska M. Leeflang, PatrickM. Bossuyt.Journal of Clinical Epidemiology 2016 Sep; 77:60-7.

Galactomannan detection for invasive aspergillosis in immunocompromisedpatients.Mariska MG Leeflang, Yvette J Debets-Ossenkopp, Junfeng Wang, Caroline EVisser, Rob JPM Scholten, Lotty Hooft, Henk A Bijlmer, Johannes B Reitsma,Mingming Zhang, Patrick MM Bossuyt, Christina M Vandenbroucke-Grauls.Cochrane Database of Systematic Reviews 2015, Issue 12

271

Page 36: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

Diagnostic accuracy of minimally invasive markers for detection of airwayeosinophilia in asthma: a systematic review and meta-analysis.Daniël A Korevaar, Guus A Westerhof, Junfeng Wang, Jérémie F Cohen, RenéSpijker, Peter J Sterk, Elisabeth H Bel, Patrick M M Bossuyt.The Lancet. Respiratory medicine 03/2015; 3(4)

Biomarkers to identify sputum eosinophilia in different adultasthmaphenotypes.Guus A. Westerhof, Daniël A. Korevaar, Marijke Amelink, Selma B. de Nijs,Jantina C. de Groot, Junfeng Wang, Els J. Weersink, Anneke ten Brinke, Patrick M.Bossuyt, Elisabeth H. Bel.Eur Respir J 2015; 46: 688¨C696

Low interobserver agreement among endoscopists in differentiatingdysplastic from non- dysplastic lesions during inflammatory bowel diseasecolitis surveillance.Linda K. Wanders, Erik Mooiweer, Junfeng Wang, Raf Bisschops, G. JohanOfferhaus, Peter D. Siersema, Geert R. D’Haens, Bas Oldenburg, Evelien Dekker.Scandinavian Journal of Gastroenterology. 2015; 50: 1011¨C1017.

Optical diagnosis of malignant colorectal polyps: is it feasible?Manon van der Vlugt, Sascha C van Doorn, Junfeng Wang, Barbara A Bastiaansen,Lodewijk A Brosens, Paul Fockens, Evelien Dekker.Endoscopy International Open, 4(7), E778¨CE783

Development and Validation of the WASP-Classification System for OpticalDiagnosis of Adenomas, Hyperplastic Polyps and Sessile SerratedAdenomas/Polyps.Joep E G IJspeert, Barbara A J Bastiaansen, Monique E van Leerdam, Gerrit AMeijer, Susanne van Eeden, Silvia Sanduleanu, Erik J Schoon, Tanya M Bisseling,Manon Cw Spaander, Niels van Lelyveld, Marloes Bargeman, Junfeng Wang,Evelien Dekker.Gut 03/2015; 81(5).

272

Page 37: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

Curriculum vitae

Page 38: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European
Page 39: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

Junfeng Wang was born on 4th March 1986

in Harbin, Heilongjiang, China, and grew up

there.

After finishing his secondary education in

Harbin No. 3 High School in 2004, he went to

study Statistics at Renmin University of China,

Beijing. Upon completing his Bachelor degree

in June 2008, he joined Deloitte China as a con-

sultant in Risk Advisory and worked there for

two years. During this period, he was involved

in several projects on credit risk model develop-

ment in leading Chinese banks, and he developed

an interest in predictive modelling.

In 2010, he proceeded to the Netherlands

to pursue a Master degree in Quantitative Fi-

nance and Actuarial Science at Tilburg Universi-

ty. After graduation, he continued his career in

financial risk management in ING Bank, Model

Validation team, in Amsterdam.

In November 2012, he began his PhD study

in Biostatistics, at the department of Clinical

Epidemiology, Biostatistics and Bioinformatics,

Academic Medical Center, University of Ams-

terdam, in the Biomarker and Test Evaluation

(BiTE) group lead by Prof. dr. Patrick Bossuyt.

His research was focused on statistical methods

in evaluating medical tests, biomarkers and pre-

diction models, as presented in this PhD thesis.

In the forth year of his PhD (2016), he got

an opportunity to work one year for Rabobank,

in Utrecht, to keep his knowledge in finance and

risk management up-to-date.

275

Page 40: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

276

Page 41: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

Acknowledgements

Page 42: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European
Page 43: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

I would like to express my sincere gratitude to:

My supervisors:My promotor, Patrick Bossuyt: For your trust and encouragement. This

accomplishment would not happen without you.

My promotor, Koos Zwinderman: For your insight advice on my research,

especially on the statistical methods.

My co-promotor, Mariska Leeflang: For your consideration and lots of help in

daily supervision.

My co-promotor, Ronald Geskus: For your criticalness and challenges. I really

learnt a lot during our broad discussion.

My PhD committee members: For your time in reading my thesis and the positive

feedbacks.

Dear Corien Meijer: Thank you for helping me with the preparation of my PhD

defence and all the helps during my stay with BiTE.

My paranymphs, Yue Li and Weiluan Chen: For all your advice and kind help

in preparing my PhD defence, reception and the party. Special thanks to Weiluan,

for your intelligence, in designing my thesis cover. I have had the idea for a long

time but never expected the complicated design could come true, until you made it

perfectly reflecting what’s in my mind.

My collaborator, Liesbeth de Vries: For our valuable collaboration. As co-first au-

thor on two of the chapters, you made an important contribution to the development of

this thesis. Also thanks for the memorable "PSC model dinner", I felt really "gezellig".

279

Page 44: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

Members and former members of BiTE group, Miranda Langendam, JérémieCohen, Daniël Korevaar, Annefloor van Enst, Parvin Tajik, Gowri Gopalakr-ishna, Eleanor Ochodo, Nina Steutel, Erik van Werkhoven, Mona Ghannad,Maria Olsen, and all my dear colleagues in KEBB: It was a great pleasure

working with all of you. I enjoyed the five years in KEBB.

AMC Young Talent Fund and Louise Gunning Public Health Study Fund:Thanks for supporting me to attend the summer school courses in Johns Hopkins

Bloomberg School of Public Health in Baltimore, USA.

My friends in the Netherlands: I have made many friends during my 7 years stay

in the Netherlands. Some of you are still in the Netherlands, and some of you have

left for the next adventure. Thanks you for your company and friendship.

Some very important friends:Xuelai Wang: Thanks for orienting me to the field of public health, and your advice

and help during my application and interview of this PhD position.

Jiaying Wang: Thanks for letting me be grateful for everything happened to me

and our close collaboration.

My dear parents, Hongying Kong and Shengchao Wang: Thanks for your

unconditional support, on every decision I made. This thesis is dedicated to you.

280

Page 45: UvA-DARE (Digital Academic Repository) Evaluating …[14]Anand Pillai and Manav Jain. Management of clinical fractures of the scaphoid: results of an audit and literature review. European

Recommended