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TribeSobralieae,describedbyPfitzer in1887,haslong been recognized as a natural group, at least inpart.Forpartofitsnomenclaturalhistoryithasbeen
known as subtribe Sobraliinae (although placed inseveral different tribes). Dressler (1981) placed hissubtribe Sobraliinae in tribe Arethuseae based on
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PRELIMINARY MOLECULAR PHYLOGENETICS OF SOBRALIA AND RELATIVES (ORCHIDACEAE: SOBRALIEAE)
Kurt M. Neubig1,2,5, W. MarK WhitteN2, Mario a. blaNco1,2,3, loreNa eNdara1,2, Norris h.WilliaMs2 & saMaNtha Koehler4
1DepartmentofBiology,UniversityofFlorida,Gainesville,Florida32611-8526,U.S.A.2FloridaMuseumofNaturalHistory,UniversityofFlorida,P.O.Box117800,Gainesville,
Florida32611-7800,U.S.A.3JardínBotánicoLankester,UniversidaddeCostaRica,Apdo.1031–7050,Cartago,CostaRica
4DepartamentoCiênciasBiológicas,UniversidadeFederaldeSãoPaulo,Diadema,SP,09972-270,Brazil
5Correspondingauthor:[email protected]
abstract. Withover200species,theorchidtribeSobralieaeisamajorconstituentoftheNeotropicalflora.Ascurrentlycircumscribed,thetribeincludesfourgenera:Elleanthus, Epilyna, Sertifera,andSobralia.Mostspeciesof thesefourgenera typicallyproduce long,cane-likestemsbutdifferdrastically inflowersizeandinflorescencestructure.DNAsequencedatasupportthemonophylyofElleanthus, Epilyna,andSertiferabutnotSobralia,whichisapolyphyleticassemblagetraditionallyplacedtogetherduetorelativelylargeflowersize.DetailsofinflorescencestructureprovidecharactersthatcaneasilydistinguishthedifferentcladesofSobralia.Themisleadingcharacteristicofflowersizeisprobablyduetoatleastseveralshiftsinpollinationsyndromewithin the tribe.Withfewexceptions,speciesofSobraliapredominantlyoffernorewardandarepollinatedbybees.ElleanthusandSertiferaaresmall-floweredandmostlypollinatedbyhummingbirdswithlegitimaterewards. Nothing is known of pollination inEpilyna. Understanding the evolution of shifts in pollinationsyndromewill requiremore empirical observations of pollinationwithin Sobralieae. In addition, increasedtaxonsamplingandimprovedphylogeneticresolutionareneededbeforegenericrealignmentsaremade.
resuMeN.Conmásde200especies,latribudeorquídeasSobralieaeesuncomponenteimportantedelariquezaflorísticadelosneotrópicos.Actualmenteestatribuestáconstituídaporcuatrogéneros:Elleanthus, Epilyna, Sertifera, y Sobralia.Lasplantasdeéstoscuatrogénerosgeneralmenteproducentalloslargoscomocañas,perodifierenenformadrásticaeneltamañodelaflorylaestructuradelasinflorescencias.DatosdeADNapoyanlamonofiliadeElleanthus, Epilyna, y Sertifera,peronodeSobralia.Sobraliaesunensamblajepolifilético,tradicionalmentecircunscritoporelgrantamañodesusflores.LosdetallesdelamorfologíafloralylaposicióndelainflorescenciaproporcionancaracteresquefácilmentepermitendistinguirlosdiferentescladosdeSobralia.Eltamañodelafloryciertasotrascaracterísticassuperficialesprobablementehansufridocambiosevolutivosenrespuestaacambiosenelsíndromedepolinizacióndentrodelatribu.LamayoríadelasespeciesdeSobralianoofrecenningunarecompensaysonpolinizadasporabejasenbuscadenéctar.Elleanthus y Sertiferatienenflorespequeñasqueaparentementesonpolinizadasporcolibríes,enestosdosgéneroslasfloresofrecennéctar.NoseconocenadasobrelapolinizacióndeEpilyna.MasobservacionesempíricasdelospolinizadoresdeSobralieaesonnecesariasparaentenderlaevolucióndelossíndromesdepolinización,yrequeriráunmayormuestreodeespeciesyunamejorresoluciónfilogenéticaantesderealizarrecircumscripcionesgenéricas.
Key Words:Orchidaceae,Sobralieae,Sobralia,phylogenetics
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symplesiomorphiessuchaspresenceofcorms,plicateleaves,andeightsoftpollinia(althoughhealsoincludedaberrantgenerasuchasArpophyllum andXerorchis).Dressler (1993) later placed subtribe Sobraliinae intribeEpidendreaebasedonthedistinctivevelamenandseedmorphology. In general, variation in taxonomicplacementofSobralieaehasbeenassociatedwithotherbasalmembersofsubfamilyEpidendroideaebasedonplesiomorphicsubfamilialcharacters.MorerecentandobjectivephylogeneticanalysesusingDNAdatahavedemonstratedthatSobralieaearebasalmembersofthesubfamily Epidendroideae, closely related to generasuch as Tropidia (Cameron et al., 1999; Cameron,2002,2004).BecausethisgroupisnotcloselyrelatedtoothertaxaintribesEpidendreaeandArethuseae,theformer subtribe Sobraliinae is now recognized as atribe(seePridgeonet al.,2005). Tribe Sobralieae consists of only four genera ofunequal species richness. Two genera, Elleanthus C.Presl. and Sobralia Ruiz & Pav., each consist ofabout 100 species, whereas the other two genera,Epilyna Schltr. and Sertifera Lindl. & Rchb.f., eachconsist of less than10 species.The tribe as awholeiswidelydistributed in tropicalAmerica.Sertifera is restrictedtorelativelyhighelevationsinthenorthernAndes.Epilyna isfoundinsouthernCentralAmericaandnorthernSouthAmerica.Elleanthus isdistributedthroughout tropicalAmerica, andSobralia is similarindistributionexceptfornotableabsenceintheWestIndies. Although some vegetative traits are useful foridentifyingspeciesorgroupswithinSobralieae,thereisamplehomoplasyinvegetativemorphologyamongdistantly related taxa. Genera have been delimitedon the basis of relatively few gross floral characters(Fig. 1).Sobralia has largely been recognized basedon relatively large flowers. The other three genera(Elleanthus, Epilyna, Sertifera) all have relativelysmall flowers. This criterion is misleading andhas been shown to result in the circumscription ofpolyphyleticgroupsbasedonhomoplasiouscharacterevolution (e.g., Johnson et al., 1998). Because therehas been such a poor understanding of genericcircumscription inSobralieae andno robustly taxon-sampled phylogenetic analysis of the tribe, weaddressedphylogeneticrelationshipswithinthetribe.Wehypothesizedthatfloralsizewouldnotbeadequate
forreciprocalmonophylyinthesegenerabecausethepolarity of such a character would make one statesymplesiomorphic.Therefore,thepurposeofthisstudywastoprovideaphylogeneticframeworkinwhichtounderstandtheevolutionofmorphologicalvariationintribeSobralieae.
Materials and methods
Taxon sampling — Specimens were obtained fromwild-collected and cultivated plants (Table 1).Sampling of Elleanthus, Epilyna, Sertifera, andSobralia included 42 species. Outgroups includedthree other genera of basal Epidendroid tribes —Neottieae (Palmorchis), Arethuseae (Bletilla), andTropidieae (Tropidia).Outgroupswere chosen basedonphylogeneticplacementofSobralia andElleanthus in previous work (Cameron et al., 1999; Cameron,2002;Chaseet al.,2003;Cameron,2004).
Extractions, amplification and sequencing –Allfreshlycollectedmaterialwaspreserved in silicagel (Chase&Hills,1991).GenomicDNAwasextractedusingamodifiedcetyl trimethylammoniumbromide (CTAB)technique (Doyle&Doyle, 1987), scaled to a 1mLvolumereaction.Approximately10mgofdriedtissuewereground in1mLofCTAB2Xbufferandeither8μLofβ-mercaptoethanolor10μLofproteinase-K.Some total DNAs were then cleaned with QiagenQIAquick PCR purification columns to remove anyinhibitorysecondarycompounds.AmplificationswereperformedusingaBiometraTgradientoranEppendorfMastercyclerEPGradientS thermocyclerandSigmabrand reagents in 25μLvolumeswith the followingreaction components for ITS: 0.5-1.0 μL templateDNA(~10-100ng),11μLwater,6.5μL5MBetaine,2.5μL10Xbuffer,3μLMgCl2(25mM),0.5μLof10μMdNTPs, 0.5 μL each of 10 μMprimers, and 0.5unitsTaq.Fortheplastidregionsthefollowingreactioncomponents were used: 0.5-1.0 μL template DNA(~10-100 ng), 16-17.5 μLwater, 2.5 μL 10X buffer,2-3μLMgCl2(25mM),0.5μLof10μMdNTPs,0.5μLeachof10μMprimers,and0.5unitsTaq. nrITS (ITS1+5.8S rDNA+ ITS2) –This regionwas amplified with a touchdown protocol using theparameters94C,2min;15X (94C,1min;76C,1min,reducing1Cpercycle;72C,1min);21X(94C,1min;59C,1min;72C,1min);72C,3minwiththe
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primers17SE(ACGAATTCATGGTCCGGTGAAGTGTTCG)and26SE(TAGAATTCCCCGGTTCGCTCGCCGTTAC)fromSunet al.(1994). trnSGCU-trnGUCC – This region was amplified withtheparameters94C,3min;33X(94C,30sec;50C,30 sec;72C,2min);72C,3min,with theprimerstrnSGCU(AGATAGGGATTCGAACCCTCGGT)and3’trnGUUC(GTAGCGGGAATCGAACCCGCATC)fromShawet al.(2005). ycf1 –Wesequencedaca.1500base-pair(bp)portionfromthe3’end(Neubiget al.,2009).Thisregionwasamplified using a “touchdown” protocol with the
parameters94C,3min;8X(94C,30sec;60-51C,1min;72C,3min);30X(94C,30sec;50C,1min;72C,3min);72C,3min,withprimers3720F(TACGTATGTAATGAACGAATGG)and5500R(GCTGTTATT GGCATCAAA CCAATA GCG). AdditionalinternalprimersintF(GATCTGGACCAATGCACATAT T) and intR (TTT GAT TGG GAT GAT CCAAGG)werealsorequiredforsequencing. PCRproductswerecleanedwithMicroclean™(TheGel Company, San Francisco, CA, USA) followingthe manufacturer’s protocols, eluted with 50 μL of10mMTris-HCl(pH8.5)andstoredat4C.Purified
Figure1.FloraldiversityoftribeSobralieae.Thereisextensivevariationinthe“core”groupofSobralia,suchasinA) S. citrea,B)S. callosa,C)S. crocea,andD)S. luerorum.VariousmembersofSobraliasect.SobraliaincludeE)S. ciliata, F)S. portillae,G)S. mandonii,andH)S. caloglossa(notsampledinthisstudy,butunpublisheddataplacethisspeciesinacladewithS. mandoniiandS. dichotoma).MostmembersofthegenusElleanthushavebrightlycoloredbractsandflowersasinI)E. caravata,butsomespecieshavesmallwhiteflowersandbrownishbractsasinJ)E. lancifolius.K)SpeciesofthegenusSertiferaallhaveflowersthatarebrightlycoloredpinkandwhite.
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table1.Speciesnamesandvoucherinformation,includingherbariumofvoucherdeposition,formaterialusedinthisstudy.
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PCR products were then cycle-sequenced using theparameters 96 C, 10 sec; 25X (96 C, 10 sec; 50 C,5 sec; 60 C, 4min), withmix of 3 μLwater, 1 μLfluorescentBigDyedideoxy terminator, 2μLBetterBuffer™(TheGelCompany),1μLtemplateand0.5μL primer. Cycle sequencing products were cleanedusing ExoSAP™ (USB Corporation, OH, USA)followingthemanufacturer’sprotocols.Purifiedcyclesequencing products were directly sequenced on anABI377,3100or3130automatedsequenceraccordingtothemanufacturer’sprotocols(AppliedBiosystems,FosterCity,CA,USA).Electropherogramswereeditedand assembledusingSequencher 4.9™ (GeneCodes,AnnArbor,MI,USA).AllsequencesweredepositedinGenBank(Table1).
Data analysis – Sequencedataweremanuallyalignedusing Se-Al v2.0a11 (Rambaut, 1996). No sequencedatawereexcludedfromanalyses.Indels(insertions/deletions) were not coded as characters. Analyseswere performed using PAUP*4.0b10 (Swofford,1999). Fitch parsimony (unordered characters withequalweights;Fitch,1971)analysesusedaheuristicsearch strategy consisted of branch swapping by
tree bisection reconnection (TBR),Deltran characteroptimization, stepwise addition with 1000 random-addition replicates holding 5 trees at each step, andsaving multiple trees (MulTrees). Levels of supportwereassessedusingthebootstrap(Felsenstein,1985).Bootstrappercentagesunderparsimonywereestimatedwith1000bootstrapreplicates,usingTBRswappingfor50 randomaddition replicates per bootstrap replicate.Formaximumlikelihood(ML),Modeltest(Posada&Crandall,1998)wasusedtodeterminetheappropriatemodel for analysis using all combined data undertheAkaike InformationCriterion.MLanalyseswereperformedusingaTrN+I+ΓmodelfortheITSdataset,aK81uf+I+Γmodelforthecombinedplastiddataset,andTIM+I+Γmodelforthecombinedthree-genedataset.Bootstrap percentages underMLwere estimatedwith100bootstrapreplicates,usingTBRswappingforonerandom-additionreplicateperbootstrapreplicate.
AllanalyseswereperformedfordatasetsincludingITS only, plastid only, and all data combined. Datacongruencewastestedusingthepartitionhomogeneitytest (HTF) in PAUP*4.0b10 (Swofford, 1999) asdescribed by Johnson and Soltis (1998). Heuristic
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searchesfortheHTFtestswereperformedusing100replicates and TBR branch-swapping. Probabilityvalueslowerthan0.05wereusedtoidentifydatasetsthatweresignificantlydifferentfromoneanother.
Results
ThealignedlengthoftheITSdatasetwas892bp.Of these, 222 were parsimonyinformative (24.9%).FitchparsimonyanalysisoftheITSregionfound100equallyparsimonious treesof798 steps (consistencyindex (CI) = 0.589, retention index (RI) = 0.753).The aligned length of the combined plastid data set(trnS-G andycf1)datasetwas2919bp.Ofthese,250wereparsimony-informative(8.6%).Fitchparsimonyanalysis of the combined plastid data set found 100equallyparsimonioustreesof1112steps(CI=0.772,RI=0.794).Thealignedlengthofthecombined(three
DNA regions) data set (ITS, trnSG, and ycf1) was3811 bp. Of these, 472 were potentially parsimony-informative (12.4%).Parsimony analysis of all threeDNAregionsfound36equallyparsimonioustreesof1926steps(CI=0.690,RI=0.767). Maximum likelihood analysis of ITS only (notpresented), plastid data only (not presented), and allthreeregions(-lnL=16599.46)yieldedtreessimilarintopologytoparsimony.Bootstrapsupportforallnodeswassimilartothatfromparsimony.TheonlyexceptionisintherelativeplacementofSobralia ciliata inplastidversusITSdata(Fig.2). Partition homogeneity tests showed mixed resultsforcongruenceamongthedifferentpartitionsofthesedata.ThetestcomparingITSandthecombinedplastiddatashowedsignificant incongruencecomparedwithrandompartitionsof thesamesize(P=0.03,α=0.05).
Figure2.ComparativephylogeneticstructureamongdatapartitionsinSobralieae.A)Fromcombinedplastiddataset(ycf1andtrnS-G).B)Fromnuclearribosomalinternaltranscribedspacer(ITS).Numbersaboveorbelowbranchesindicatemaximumlikelihoodandparsimonybootstrappercentages,respectively.Anasteriskrepresentsbootstrapsupportoflessthan50%.
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However, various combinations of each of the threeindividual data sets did not indicate significantincongruence (ITS/trnS-G P=0.10; ITS/ycf1 P=0.13;ycf1/trnS-G P=0.05).Avisualcomparisonofbootstrappercentages between the different data sets (Fig. 2)indicatesthatthereareonlyafewexamplesofstrongincongruence. For example,Sobralia ciliata is sistertothe“core”groupofSobralia accordingtoITSbutsister to the rest of the tribe in the plastid data set.Other incongruencies can be found in the relativepositionsofS. dorbignyana, S. portillae, S. mandonii, S. dichotoma, and Sertifera colombiana. All datawere combined because the partition homogeneitytest has been demonstrated to be overly sensitive(Grahamet al.,1998;Reeveset al.,2001)andbecausea total evidenceapproachyieldshighly resolvedandrelativelystronglysupportedtopology. Withlimitedoutgrouptaxonsampling,relationshipsamong the basal Epidendroideae tribes Neottieae(Palmorchis), Tropidieae (Tropidia), Arethuseae(Bletilla), and Sobralieae remain unclear. However,tribeSobralieaeismonophyleticinalldatasets. Within Sobralieae, there are many consistentfeaturesamongdifferentdatasets.The“core”groupofSobralia (seeFig.3,4),Elleanthus,andEpilyna are all consistentlymonophyletic.Becauseonlyone sampleofSertifera wasusedinthisstudy,monophylyofthegenus couldnot bedetermined. Inconsistent featuresof phylogenetic topology are centered on Sobralia species within section Sobralia: S. dichotoma, S. ciliata, S. dorbignyana, S. mandonii,andS. portillae.These species have basal positions within the trees;however, their relative position to each other variesamongdifferentdatasets.
Discussion
Morphologicalcharacterssupportingthemonophylyof Sobralieae include an elongate cane-like stemand flowers with two calli at the base of the lip.Within Sobralieae, Elleanthus and Epilyna are bothmonophyletic,butSobralia ispolyphyletic.Wesoughtmorphological features that might distinguish thevariouscladesthathavebeentaxonomicallyincludedinSobralia.Thesefeaturesarediscussedbelow.
Inflorescence structure – InflorescencesinSobralieaemay be axillary or terminal.Terminal inflorescences
are formed at the apex of a shoot and axillaryinflorescencesarebornefromaxillarybuds,basaltotheshootterminus.Thedistinctionbetweenthesetwopositionscanbeblurredinsomeplantgroups,butinSobralieae,thedifferenceisusuallyclear(seeFig.1,4forvariation in inflorescencestructure).However,in a few species (e.g.,Sobralia dorbygniana), bothterminal and axillary inflorescences are producedbecause the inflorescence is a compound panicle.Inflorescences also have bracts (leaf-derivedstructures), and these can vary in size and shape.Furthermore, the axis of an inflorescence (i.e., therachis)may be highly condensed (capitate in somespecies of Elleanthus) or elongate, branched orunbranched, erect or (less commonly)nodding, andmay have either spiral or distichous phyllotaxy.In a few species of Elleanthus, specialized shortshoots with reduced leaves bear the (terminal)inflorescences,whereasthetaller,leafyshootsdonotproduceinflorescencesatall. In Sobralieae, all of these inflorescencestructural variants exist in some combination.These differences are presented in the simplifiedillustrations ofFigure 4.As delimited inFigure 3,the“coreSobralia”isagroupdistinguishedbytwomaintypesofinflorescencemorphology.Bothtypesareterminal,but inspeciessuchasS. rosea andS. luerorum (S. sect. Racemosae) the floral displaysare strongly distichous and the rachis is fractiflex(“zigzag”) with relatively large bracts. Sobralia liliastrum also has this inflorescence morphology,andwhencombinedwithS. rosea andS. luerorum, thisassemblageisparaphyletic.Intheremainderof“core Sobralia,” the inflorescence rachis is highlycondensed, such that the internodes of the rachisare extremely short (often 1-2mm).The resultingmorphology appears acaulescent with relativelylargebracts.ThiscondensedinflorescenceispresentinmanySobralia withephemeralflowers. Inthecombinedanalysis(Fig.3,4),Sobralia ciliata issisterto“coreSobralia,”whereasS. dichotoma andS. mandonii are sister to the remainderof the tribe.These three specieshave all beenplaced inS. sect.Sobralia. In addition to the genus Sertifera, thesespecies all have axillary inflorescences thatmay ormaynotbranchtoformpaniclesaswellasrelativelysmallinflorescencebracts.Twoadditionalspeciesof
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S. sect. Sobralia (S. dorbignyana and S. portillae)have terminal inflorescences.This feature is sharedwith virtually all species ofEpilyna andElleanthus.Elleanthus has the most variable inflorescences inthe whole tribe. Elleanthus inflorescences can bedistichous or spirally arranged, capitate to looselyracemose,andcanbeorienteddownwards,upwardsorevenhorizontally(paralleltotheground). The evolutionary trends in each of the two largeclades of Sobralieae demonstrate the plesiomorphiccondition of axillary inflorescences. This apparentlysymplesiomorphic grade across both major clades
is represented by some taxa ofS. sect.Sobralia andSertifera.Theresultisthattherehasbeenindependentconvergence to terminal inflorescences across bothlargecladesinSobralieae.
Flower size – There is a great range in flower sizeof Sobralieae. Species of Elleanthus, Epilyna, andSertifera have relatively small flowers compared tothe flowers of Sobralia. Variation in floral size islikely a consequence of shifts in pollinationmode.The largeflowers ofSobralia aremostly pollinatedby large bees (e.g.Eulaema).The small flowers of
Figure3.Thesingletree(phylogram)ofSobralieaefoundinaheuristicmaximumlikelihoodsearchusingnallthreeDNAregions(ITS,trnS-G,andycf1).
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Figure 4.Bootstrap consensus tree ofSobralieae using all threeDNA regions (ITS, trnS-G, andycf1), to demonstraterelativesupportforclades.Numbersaboveorbelowbranchesindicatemaximumlikelihoodandparsimonybootstrappercentages,respectively.Coloredasterisksindicatedistributionofmajorinflorescencemorphologyamongtaxa(n.b., inflorescencesareespeciallyvariableinElleanthus,rangingfromfractiflextospiralandlooselyracemosetocapitatebutarealwaysterminalandconsistingofasingleaxisasindicatedbytheillustration).
Elleanthus and Sertifera are usually pollinated byhummingbirds. However, pollinators of Epilyna and those of smaller, white-flowered species ofElleanthus,areunknown. Variation of different pollinators and associatedfloral morphologies have been well documentedin some systems (Thomson and Wilson, 2008).However, there are also taxonomic implicationsfor shifts in pollination syndrome. Often, species
orgroupsof species thathave shifted to adifferentsyndromehavebeentraditionallyplacedindifferentgenera.Thisnomenclaturalbiastorecognizegenerabecauseofvariation ingrossfloralmorphologyhasbeen demonstrated to conflict with phylogeneticrelationshipsduetohomoplasyinpollination-relatedfloral characters. This bias is particularly apparentwithinSobralia.Sobralia callosa hasbeensegregatedas Lindsayella Ames&C.Schweinf. because of its
distinctivehummingbird-floralsyndrome,asopposedtothetypicalbee-floralsyndromethatischaracteristicofmostspeciesofSobralia.However,therecognitionofLindsayella wouldelevatethedegreeofpolyphylyin Sobralia. The floral morphology is misleadingin this example because “distinctiveness” does notconnotereciprocalmonophyly. In a larger phylogenetic context, relatively largeflowers are plesiomorphic within the tribe, andgeneric concepts should not be based primarilyon flower size. However, flower size combinedwith inflorescence position and structure arediagnostic, and we recommend that future genericrecircumscriptions be based on the combination ofthese apomorphic characters in conjunction withmolecular data. Unfortunately, the type species ofSobralia is S. dichotoma (designated byAngely inFl. Analítica São Paulo 6:1268.1973).Thisspeciesdoesnotbelongto“coreSobralia”asdefinedinthispaper.Asaresultofthisquirkofhistoryandbecauseof the polyphyly ofSobralia, there are problematicnomenclaturalissueswithtribeSobralieae.However,thisproblemisbestresolvedwithmoredataandwillbethesubjectoffutureresearch.
acKNoWledgMeNts. WethankJardínBotánicoLankester(Universidad de Costa Rica) for contributing voucheredspecimens and tissue. We are grateful to the Portillafamily of Ecuagenera Ltd. in Gualaceo, Ecuador, and toAndyPhillips ofAndy’sOrchids inEncinitas,California,for generous access to their collections. Some specimenswere generously provided by Delsy Trujillo. RobertDressler helped with identification and provision ofspecimens. Barbara Sue Carlsward provided technicalsupport.Computation timewas provided by the FLMNHPhyloinformaticsClusterforHighPerformanceComputingintheLifeSciencesfundedbygrantsfromtheU.S.NationalScience Foundation awarded to Pam and Doug Soltiswith technical assistance provided byMattGitzendanner.Wealso thankSavitaShanker andPatrickThimoteat theInterdisciplinary Center for Biotechnology Research atUniversityofFlorida.Specimencurationhasbeenprovidedprimarily byKent Perkins at the FLAS herbarium in theFloridaMuseumofNaturalHistory.PortionsofthisresearchwerefundedbytheLewisandVarinaVaughnFellowshipinOrchidBiology,theAmericanOrchidSociety’s11thWorldOrchidConferenceFellowshiptoK.Neubig,andtheU.S.NationalScienceFoundationgrantNo.DEB-234064toN.H.WilliamsandW.M.Whitten.
Literature cited
Cameron, K. M., M. W. Chase, W. M. Whitten, P. J. Kores, D. C. Jarrell, V. A. Albert, T. Yukawa, H. G. Hills, D. H. Goldman. 1999. A phylogenetic analysis of the Orchidaceae: evidence from rbcL nucleotide sequences. Amer. J. Bot. 86: 208-224.
Cameron, K. M. 2002. Molecular systematics of Orchidaceae: a literature review and an example using five plastid genes. Pp. 80-96 in: H. Nair (ed.). Proceedings of the 17th World Orchid Conference. Natural History Publications (Borneo) Sdn. Bhd., Sabah, Malaysia.
Cameron, K. M. 2004. Utility of plastid psaB gene sequences for investigating intrafamilial relationships within Orchidaceae. Molec. Phylogen. Evol. 31: 1157-1180.
Chase, M. W., J. V. Freudenstein, K. M. Cameron & R. L. Barrett. 2003. DNA data and Orchidaceae systematics: a new phylogenetic classification. Pp. 69-89 in: K. W. Dixon, S. P. Kell, R. L. Barrett & P. J. Cribb (eds.). Orchid conservation. Natural History Publications, Kota Kinabalu, Malaysia.
Chase, M. W. & H. G. Hills. 1991. Silica gel: an ideal material for field preservation of leaf samples for DNA studies. Taxon 40: 215-220.
Doyle, J. J. & J. L. Doyle. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19: 11-15.
Dressler, R. L. 1981. The orchids: natural history and classification. Harvard University Press, Cambridge, Massachusetts, USA.
Dressler, R. L. 1993. Phylogeny and classification of the orchid family. Dioscorides Press, Portland, Oregon, USA
Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
Fitch, W. M. 1971. Toward defining the course of evolution: minimum change for a specific tree topology. Syst. Zool. 20: 406-416.
Graham, S. W., J. R. Kohn, B. R. Morton, J. E. Eckenwalder & S. C. H. Barrett. 1998. Phylogenetic congruence and discordance among one morphological and three molecular data sets from Pontederiaceae. Syst. Biol. 47: 545-567.
Johnson, L. A. & D. E. Soltis. 1998. Assessing congruence: empirical examples from moleculardata. Pp. 297-348 in: D. E. Soltis, P. S. Soltis & J. J. Doyle (eds.). Molecular systematics of plants II: DNA sequencing. Kluwer Academic Publishers, Boston, Massachusetts, USA.
Johnson, S. D., H. P. Linder & K. E. Steiner. 1998. Phylogeny and radiation of pollination systems in Disa (Orchidaceae). Amer. J. Bot. 85: 402-411.
Neubig, K. M., W. M.Whitten, B. S. Carlsward, M. A. Blanco, L. Endara, N. H. Williams & M. Moore. 2009.
LANKESTERIANA 11(3), December 2011. © Universidad de Costa Rica, 2011.
316 LANKESTERIANA
Phylogenetic utility of ycf1 in orchids: a plastid gene more variable than matK. Pl. Syst. Evol. 277: 75-84.
Posada, D. & K. A. Crandall. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
Pridgeon, A. M., P. J. Cribb, M. W. Chase & F. N. Rasmussen (eds.) 2005. Genera orchidacearum, Vol. 4. Epidendroideae (Part one). Oxford University Press, UK.
Rambaut, A. 1996. Se-Al: Sequence alignment editor, v2.0a11. Oxford University, Oxford, UK. Available at website, http://evolve.zoo.ox.ac.uk/, last accessed 8 August 2002.
Reeves, G., M. W. Chase, P. Goldblatt, P. Rudall, M. F. Fay, A. V. Cox, B. Lejeune & T. Souza-Chies. 2001. Molecular systematics of Iridaceae: evidence from four plastid regions. Amer. J. Bot. 88: 2074–2087.
Shaw, J., E. B. Lickey, J. T. Beck, S. B. Farmer, W. Liu, J. Miller, K. C. Siripun, C. T. Winder, E. E. Schilling & R. L. Small. 2005. The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis. Amer. J. Bot. 92: 142-166.
Sun, Y., D. Z. Skinner, G. H. Liang, & S.H. Hulbert. 1994. Phylogenetic analysis of Sorghum and related taxa using internal transcribed spacers of nuclear ribosomal DNA. Theor. App. Genet. 89: 26-32.
Swofford, D. L. 1999. PAUP*: phylogenetic analysis using parsimony (*and other methods), version 4.0b10. Sinauer Associates, Sunderland, Massachusettts, USA.
Thomson, J. D. & P. Wilson. 2008. Explaining evolutionary shifts between bee and hummingbird pollination: convergence, divergence, and directionality. Int. J. Pl. Sc.169: 23-38.
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