1
The role of the unsaturated zone in determining nitrate leaching to
groundwater
micòl MATROCICCO1,2), nicolò COLOMBANI1,2), enzo SALEMI1), fabio VINCENZI3), giuseppe
CASTALDELLI 2,3)
1) Department of Earth Sciences, University of Ferrara, Via Saragat, 1, 44100 Ferrara, Italy 2) LT Terra&Acqua Tech, HTN Emilia-Romagna, Via L. Borsari, 46, 44100 Ferrara, Italy 3) Department of Biology and Evolution, University of Ferrara, Via L. Borsari, 46, 44100 Ferrara, Italy
Abstract
In order to identify the dominant processes affecting nitrate leaching in the Po River Delta area, field tests were
performed to determine the fate and transport of nitrogen species. Nitrogen (urea) was applied at a rate of 300
kg-N/ha/y, in both a sandy and a silty loamy sites cultivated with maize; the sandy soil was amended with
chicken manure (700 kg/ha), while the silty loamy soil never received chicken manure amendment. Each field
site was equipped with soil moisture probes, suction cups and piezometers to quantify the presence of nitrogen
and carbon dissolved species in the subsurface. Nitrate leaching was observed in the silty loamy soil, while in the
sandy soil the elevated dissolved organic matter, resulting from chicken manure decomposition, prevented the
nitrate migration towards the aquifer. Results highlight the reliability of increasing the labile organic matter in
the more permeable and intrinsically vulnerable sandy soil to prevent nitrate leaking.
1. Introduction
Nitrate (NO3-) is a pervasive inorganic pollutant often found in shallow aquifers (Galloway et al.,
2008; Rivett et al., 2008). NO3- contamination is due to agricultural fertilization and other sources, like
industrial discharges and municipal sewer systems (Wakida & Lerner, 2005). NO3- concentrations are
frequently found spatially and temporally variable in aquifers (Böhlke et al., 2002; Thayalakumaran et
al., 2008), this is usually related to variations in groundwater flow direction and nitrate attenuation
(Tesoriero et al., 2000; Almasri & Kaluarachchi, 2007). In Italy, the Po River valley is the largest and
more intensively farmed alluvial plain and is heavily impacted by NO3- groundwater contamination
(Mastrocicco et al., 2010a; Onorati et al., 2006; Cinnirella et al., 2005) and surface water
eutrophication (Provini et al., 1992; Palmieri et al., 2005). However, in agricultural practices, the
types of soils and soil tillage, different crops and irrigation techniques and different nitrogen
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fertilizers, form a variety of terms emphasizing site specificity of nitrogen load and subsequent
denitrification (Seitzinger et al., 2006). A generally well understood and quantified process of nitrogen
attenuation from surface and groundwater systems is the heterotrophic denitrification, this process
uses NO3- as electron acceptor and a carbon source as electron donor, producing nitrogen gases
(Coyne, 2008; Schipper et al., 2008).
The purpose of this research was to investigate the fluxes of NO3- from the top soil to the groundwater
in cultivated plots and to determine if the addition of chicken manure from organic farming is a viable
alternative to diminish the NO3- concentration in shallow groundwater bodies. This was tested in two
different sites with the same fertilization rates but with different soil textures, sandy and silty loamy.
In the sandy soil, chicken manure was employed to increase its low intrinsic fertility by augmenting
the soil labile organic matter (Whitmore, 2007).
2. Materials and methods
2.1. Field sites
The entire Po delta area is an intensively farmed region due to its flat topography and abundance of
surface water for irrigation; the primary agricultural land use is maize cropping. In the study area,
located in Ferrara province (Italy) at an altitude ranging from 5 to -3 m above sea level (a.s.l.), two
sites (named CCR and MON) were selected to monitor the water and nitrogen transport in the
unsaturated/saturated zone. Both the sites are cultivated under a rotation of cereals, mainly maize and
wheat, using urea as nitrogen fertilizer at an average rate of 300 kg-N/ha/y. The surface area of the
plot in each site was 1 ha, its slope was less than 0.5% (and mostly less than 0.05%). For this reason, it
was assumed surface runoff has been minimal and water movement in the unsaturated zone has been
dominantly vertical. Meteorological stations recording rainfall, wind speed, solar radiation,
temperature and humidity are located from 0.5 to 5 km far from the field sites. Data are available on-
line from meteorological regional service (www.dexter.it) and from local web service
(www.meteoveneto.com). A rain gauge was installed in each site to record daily rainfall. The linear
correlation of daily data between the rain gauges and the nearest regional weather stations (R2>0.9 for
all sites), consented to extend the data measured by the on line weather stations to the field sites.
Table 1: average meteorological parameters for the two field sites during the two monitored years.
Cumulative Rainfall
(mm)
Average Air
Temp. (°C)
Solar Radiation
(MJ/m2/d)
Humidity
(%)
Wind speed
(Km/d)
CCR 1813 13.2 1.60E-04 76 5.5
MON 999 13.6 1.66E-04 70 8.6
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To preserve natural conditions no irrigation was applied. As shown in Table 1 the average
meteorological parameters recorded in the two sites are typical of coastal plain environments, with a
sub-coastal climate characterized by cold winters and warm summers, with moderate precipitations,
elevated humidity, low wind speed, moderate daily and seasonal temperature variations.
The predominant soil textures in Ferrara province are silty loam and silty clay (68% of the territory),
while sandy soils are less common (11% of the territory). The CCR soils are in general moderately
alkaline, with the upper horizons characterized by silty clay loam texture and moderate carbonates
content; the lower horizons exhibit silty loam texture and are highly calcareous (Tab. 2). Briefly, the
hydrogeological units present in the CCR site are the unconfined aquifer composed of recent fluvial
sandy deposits with clay and silt lenses, from 0 to around 4 m below ground level (b.g.l.), and the
underlying aquiclude constituted of fluvial clay and silty sediments, from 4 to almost 14 m b.g.l..
The representative MON soil profile shows upper horizons of approximately 40-60 cm thickness
characterized by fine sand texture, with moderate carbonates content and slightly alkaline pH; while
the lower horizons exhibit alkaline pH and medium sand texture (Tab. 2). The hydrogeological units
present in the MON site are the unconfined aquifer composed of coastal plain medium and fine sandy
deposits, from 0 to around 12 m (b.g.l.), and the underlying aquiclude constituted of prodelta silt and
clay sediments, from 12 to almost 15 m b.g.l. (Stefani & Vincenzi, 2005).
Table 2: Soil characterization for the two field sites
Pedological classification Sedimentological environment Textural classification
CCR Haplic Calcisols fluvial silty loam
MON Calcaric Arenosols coastal plain sand
2.2. Analytical and field methods
To better define the site stratigraphy triplicates core logs were drilled manually with an Ejielkamp
Agrisearch auger equipment down to 2 m (b.g.l.). The soil stratification was divided in two distinct
layers: the upper one stressed by tillage, roots growth and weathering and the lower undisturbed one
(Tab. 3). In CCR site the upper layer was 0.75 m thick and in MON was 0.65 m, while the lower layer
extended until 2 m b.g.l. at both sites. From collected core samples at 0.25, 0.50, 0.75, 1 and 2 m
b.g.l., particle size curves were obtained using a settling tube for the sandy fraction and an X-ray
Micromeritics Sedigraph 5100 for the finer one. Organic matter content was measured by loss of
ignition method (Tiessen & Moir, 1993), while bulk density was determined gravimetrically.
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Table 3: average grain size distribution, bulk density and organic matter content, measured for the
upper and lower layers.
Parameter CCR
Upper Layer
CCR
Lower Layer
MON
Upper Layer
MON
Lower Layer
Grain size (%)
Sand
Silt
Clay
Bulk density (g/cm3)
Organic matter (%)
7.7
63.2
29.1
1.5
2.3
23.9
58.1
18.0
1.6
1.3
95.6
3.0
1.4
1.4
2.0
98.1
1.9
0.0
1.7
1.1
Two arrays of Watermark soil moisture probes were vertically inserted into augered holes, at the same
depths of 0.25, 0.50, 0.75 and 1 m b.g.l. in each field site. Watermark soil moisture probes were used
to monitor the soil water potential (measurement range 0-250 cbar). A copper-constantan
thermocouple was inserted adjacent to each soil moisture probe to compensate for soil temperature.
Standard Irrometer tensiometers (measurement range 0-80 cbar) were installed at 0.25 and 0.50 m
depths to monitor and correct any deviance of soil moisture probes readings.
A series of nested piezometer (2.5 cm inner diameter) screened from 1.5 to 4 m a.s.l., were installed
near the soil moisture arrays to monitor the level and quality of groundwater. Monitoring started on 27
March 2008 and is still going on. LTC M10 Levelogger Solinst dataloggers were placed in
piezometers to monitor hourly groundwater level, electrical conductivity and temperature. All the
piezometers were sampled at variable intervals, via low flow purging, for major ions and TOC/TIC
determination. Two arrays of soil solution suction samplers were installed at 0.25, 0.50, 0.75 and 1 m
b.g.l. in each site to analyze soil water in the unsaturated zone. In addition to suction sampler, the
unsaturated zone was sampled every four months by means of auger coring (from 0 to 2 m b.g.l.), and
sediments were analyzed for major anions and cations. Unsaturated zone sediment analysis consisted
of a batch with a sediment/water ratio of 1:10, using 10 g of air dried sample dispersed in 100 ml of
Milly-Q water (Millipore, US). A biological inhibitor (1 g/l phenylmercuric acetate) was added to
prevent microbial activity and the solution was stirred for 1 hour and then allowed to stand for one
day. The insoluble residue was removed by filtration and analyzed for major cations and anions. In-
well parameters were determined with the HANNA Multi 340i instrument which includes a HIcell-31
pH combined electrode with a built-in temperature sensor for pH measurements, a CellOx 325
galvanic oxygen sensor for DO measurements, a combined AgCl-Pt electrode for Eh measurement
and a HIcell-21 electrode conductivity cell for EC measurements. The major cations, anions and
oxianions (acetate and formate) were determined with isocratic dual pump ion chromatography ICS-
1000 Dionex, equipped with an AS9-HC 4 x 250 mm high capacity column and an ASRS-ULTRA
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4mm self-suppressor for anions, and a CS12A 4 x 250 mm high capacity column and a CSRS-ULTRA
4mm self-suppressor for cations. Samples were filtered through 0.22 µm Dionex vial caps. An AS-40
Dionex auto-sampler was employed to run the analyses, Quality Control (QC) samples were run every
10 samples. The standard deviation for all QC samples run was better than 4%. Charge balance errors
in all analyses were less than 5% and predominantly less than 3%. Total organic carbon (TOC) and
total inorganic carbon (TIC) were determined with a carbon analyzer (Carbon Analyzer Shimadzu
TOC-V-CSM) after acidification with one drop of 2 M HCl to remove dissolved carbonate.
3. Results and discussion
3.1 Unsaturated zone monitoring
The matric potential measured at different depth in CCR (Fig. 1) shows that during the autumn/winter
seasons the upper and the lower horizons are near the saturation state. This implies that recharge is
taking place especially during the late winter season, where the saturation state is reached in all the
measuring point concomitantly. On the contrary, from the sowing to the harvest of maize (May to
September 2009) the soil became dry in the upper horizon since the evapotranspiration was elevated
(Mastrocicco et al. 2010b).
t For crop rotation needs, in May 2010 beetroots were sowed instead of maize at CCR site and the soil
became dry also in the lower horizon, since the rooting system of the beetroot is deeper than in maize
(Christiansen et al., 2006). In addition Figure 1 shows a clear temporal shift during the wetting cycle,
from the sensor located at 0.25 m b.g.l. and the one located at 0.5 m b.g.l.; this is due to the low
permeability of these soils, which do not allow fast vertical transfer of water.
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Figure 1: rainfall and matric potential (in cbar) recorded at CCR site during the monitoring period at
different depth 0.25, 0.5, 0.75 and 1.0 m b.g.l.
Figure 2 depicts the matric potential measured at different depths in MON, here the upper soil did not
reach the values recorded in CCR because the water table was on average at 0.8 m b.g.l.. This
condition provided a continuous source of water for the maize rooting system, which did not
necessitate of irrigation during the cropping season. As a consequence, the lower horizon was always
saturated with groundwater and the elevated permeability of these sandy soils allowed fast travel times
of recharge water towards the shallow unconfined aquifer.
It is also noticeable that during the summer 2009 the soil became dry to 0.5 m b.g.l., while during the
summer 2010 only the first 0.25 m were unsaturated. This was due to the water table that was slightly
higher during summer 2010 (see Figure 6 in section 3.3).
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Figure 2: rainfall and matric potential (in cbar) recorded at MON site during the monitoring period at
different depth 0.25, 0.5, 0.75 and 1.0 m b.g.l.
3.2 Unsaturated/saturated zone profiles
Since the most intense recharge occurs during spring time, Figure 3 shows a series of NO3- profile
collected in CCR and in MON sites in April 2009 and 2010 before the fertilization. In CCR the NO3-
concentration observed in April 2009 showed a peak at 3 m a.s.l. in correspondence of the water table,
while in the saturated zone NO3- decreased rapidly to concentrations below 50 mg/l.
In April 2010 the observed NO3- profile showed very high concentration with a maximum peak below
the water table. The elevated NO3- concentration was due to a combination of factors: (i) the water
table was higher than in 2009, (ii) the temperature was lower than in 2009 and (iii) precipitation was
less intense.
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Figure 3: NO3- depth profiles at CCR (on the left) and at MON (on the right) collected in April 2009
and April 2010 (concentrations measured in solids corrected for bulk density and water content; error
bars show the standard deviation of three replicates)
The higher water table suggests that more NO3- trapped in the vadose zone can be dissolved in
groundwater, the lower temperature may decrease denitrification rate and lower rainfall contributes to
concentrate NO3-. The same trend is visible for the MON site, although NO3
- concentrations were
about five times lower and the profile appears quite different from CCR. In fact, NO3- was found only
in the upper part of the profile, while below 1 m a.s.l. NO3- was always below detection limits. Nitrate
disappearance below 1 m a.s.l. was attributed to denitrification supported by the addition of chicken
manure, in April 2008, which provided labile organic matter used as an electron donor. The process is
microbially catalyzed and can be written as an overall reaction:
5CH2O + 4NO3- → 4HCO3
- + CO2 + 2N2 + 3H2O
The process involves also nitrite as intermediate compounds that are transiently produced and then
reduced to nitrogen gas. When denitrification is not limited by organic substrate, nitrite remains at low
concentration. Otherwise, when organic substrates become limiting nitrite tends to accumulate (Nair et
al., 2007; Israel et al., 2009).; In fact, in MON site nitrite remained at very low level, always below 1
mg/l, while in CCR site concentrations up to 100 mg/l were occasionally recorded in suction cups.
This provided an evidence of incomplete denitrification due to a lack of organic substrate. Ammonium
was always observed below 2 mg/l and thus not shown.
In accordance, Figure 4 shows the TOC, acetate and TIC in both sites collected in April 2009 and
April 2010. The TOC observed in CCR site was always lower than the TOC in MON site, this can be
directly linked to chicken manure addition at MON site. Acetate concentration followed the same
trend of TOC in both sites: in fact TOC decreased with depth and also acetate, but the latter became
exhausted at shallower depths since this organic acid is quickly available as carbon source
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(Mastrocicco et al., 2011). Acetate is one of the most reactive organic acids, produced as intermediate
during organic matter degradation and thus is a good proxy to evaluate the reactivity of organic matter
(Strobel, 2001). The elevated abundance of TOC after the addition of chicken manure in MON is
another evidence of the excess of electron donors compared to nitrate. This led to a full nitrate
reduction within the first meter of soil. On the contrary, at CCR site the TOC and acetate
concentrations were not sufficient to support denitrification, leading to accumulation of nitrite. This
conceptual model was also supported by the measured dissolved oxygen at MON and CCR sites in the
piezometers: at MON oxygen was always below detection limits, while in CCR oxygen was present
between 3 to 5 mg/l. Finally, the TIC vertical distribution supports the postulated denitrification
reaction, because in MON the TIC concentration was elevated in the vadose zone, where the NO3- was
consumed. While, in CCR the TIC increased towards the bottom of the aquifer, simply following the
accumulation trend of total dissolved species (not shown).
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Figure 4: TOC, acetate and TIC depth profiles at CCR (on the left) and at MON (on the right)
collected in April 2009 and April 2010 (concentrations measured in solids corrected for bulk density
and water content; error bars show the standard deviation of three replicates)
3.3 Saturated zone monitoring
Figure 5 shows a variable groundwater table with large seasonal variations in the loamy soil , where
the groundwater flow is linked with canals level. In particular, the sharp peak recorded the 21/06/2010
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was due to a flood event that increased the level of the nearby canal of 2.5 m, but the soil moisture
sensor placed at 1m b.g.l. was not in saturation condition (Figure 1). This proves that the peak was due
to groundwater fluctuation induced by the canal and not by recharge.
Figure 5: groundwater level fluctuations of NO3- and EC trends in groundwater at CCR (loamy soil)
throughout the monitoring period.
At the CCR site nitrate mass transfer to the unconfined aquifer was slow as shown in Figure 5 and
concentrated at the end of the winter season, when the water table rose and brought in solution the
available NO3-. For comparison with NO3
- in Figure 5 is plotted also the EC, but is evident that there is
not a direct relation between these two parameters. EC was generally increasing when the water table
was rising, since the latter dissolved the salts accumulated in the vadose zone. While during the
summer seasons EC decreased because groundwater was replaced by canal water that had a lower EC.
Figure 6: groundwater level fluctuations of NO3- and EC trends in groundwater at MON site (sandy
soil) throughout the monitoring period.
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Figure 6 shows that in the MON site groundwater fluctuations were less pronounced than in CCR,
since MON site is located near the coast and the water table fluctuations are smoothed. At the MON
site, despite the fast transfer of mass induced by the elevated permeability of the soil, NO3-
concentration was very low. In fact, NO3- concentration never exceeded 2 mg/l confirming that the
denitrification process efficiently removed all the NO3- as explained above (paragraph 3.2). The EC
monitoring was less continuous due to malfunction of the EC probe, thus only the EC measured during
sampling campaigns is shown. In general the EC seems to be related to the rainfall, exhibiting
decreasing values after prolonged rainy periods although is not possible to infer clear trends with these
sparse data. Like for the CCR site, the EC trend can not be directly related to NO3- concentration in
groundwater.
4. Conclusions
The proposed approach has evidenced that in the sandy soil, the release of organic substrates from the
mineralization of manure was sufficient to prevent nitrate leaking. Therefore this study emphasizes the
importance of considering the role of labile organic matter in buffering NO3- excess via denitrification
reactions. In particular, the augmentation of the soil labile organic matter with chicken manure,
provided a source of labile organic acids, like acetate, used as substrates for the denitrification process.
On the other hand, in the unamended silty loamy soil the chronic deficiency of labile organic matter,
could not prevent nitrogen leaking towards the shallow unconfined aquifer.
According to the sustainable agricultural practices recommended by the Water Framework Directive
(2000/60 EU) to prevent groundwater pollution, this approach has demonstrated that even in the
intrinsically more vulnerable area (the sandy soil), a relatively low but constant release of organic
substrates was sufficient to prevent nitrate leaking. Nevertheless, further research should pay attention
to the kind of manure used and to the farming practices, organic or industrial. In fact, this last term
may influence organic matter transformation kinetics and nitrogen mineralization rates, because of the
presence of hormones, antibiotics and other undesired chemicals that could impact the groundwater
quality and could interfere with bacterial activities. Although in literature there is an increasing
interest on using 15N and 18O nitrate isotopes to distinguish the origin of nitrate, and numerical
modelling of nitrate leaching to quantify the mass transport; the present study was done on relatively
simple sites, where depth dependent monitoring allowed to distinguish between different flow and
reactions pathways. Nevertheless, the isotopic and numerical modelling approaches are key tools to
track the fate of nitrogen species in the subsurface.
Acknoledgments
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Dr. Umberto Tessari and Dott. Sandro Bolognesi are acknowledged for the technical and scientific
support. The Emilia–Romagna ARPA SIMC is acknowledge for the meteorological data. The work
presented in this paper was made possible and financially supported by PARC-AGRI under “Contratto
di Programma (Delib.CIPE n.202)” and by the Province of Ferrara within the EU-Water Project of the
South-East Europe Program.
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