My Lab Human or Mouse Affymetrix Gene Expression Experiments
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Affymetrix Human Genome U133 Plus 2.0 ArrayAffymetrix Human Genome U133A ArrayAffymetrix HT Human Genome U133A ArrayAffymetrix Mouse Genome 430 2.0 ArrayAffymetrix Mouse Genome 430A 2.0 Array
Supported Platforms
Samples annotation
Raw data on hard drive
Raw data and samples annotation securely stored and well organized
Step 1 — Safe Storage: your raw files and sample annotation on InSilico DB, recover them when you want
- 100% web-based- Firefox- Chrome- Safari- IE8 and higher
InSilicoDB.com Requirements Grant or removeaccess to collaborators
Store all your data in oneplace online
You can always easily retrieve your data back
Normalization Data Formatting
fRMA:
Modern version of classic/standardRMA algorithm that improves comparison across studies
Data StorageMake Compatible with tools that need no programming
GENE-E
Make Compatible with tools for people who program
Step 2 — Raw data is compiled into a dataset: preprocessed, formatted ready for analysis, sharing, editing sample annotation
Below Process Automatically Performed behind the scenes
Step 3 – Pay 50 € / per sample to activate for analytics
Use “1MONTHTRIAL”coupon and activate for free
You now have accessto the best analysis toolsright from InSilico DBduring one month
Click on activateto unclock the integration with visualization and analyticsthrid-party, free open-source tools
Requirements:- Sign up to GENE-E- Java- Authentication with
InSilico DB username and password
- No installation required
Capabilities- Heatmaps- Differential
expression analysis- Venn Diagrams- Hierarchical
Clustering- Publication grade
figures
Secure Export
Requirements:- Sign up to
Genepattern- No installation
required- Web based
Capabilities- Hundreds of analysis
Modules developed by Broad Institute and
GenePattern comunnity
GENE-E
Secure Export
Step 4 — Analyze and Discover – The best analysis tools are at your fingertips
GSEA
VennDiagrams
Differential Expression Heatmaps
Third-party Analysis Tools are tightly and securely integrated with InSilico DB and require no installation:- They are web-based, eg,
GenePattern- They are run through Java
Web start, which automatically runs a java application on your machine