6th Congress, Beijing, ChinaMay 5-7, 2012
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General Information
Welcome to the AOHUPO 6th Congress. All congress activities and exhibit booths are in the Convention Area of the China National Convention Center.
Registration and InformationThe registration desk is located on the 4th floor of the Convention Area (Entrance C1 of the CNCC).
Opening Time:May 4 08:30 - 21:00May 5 08:30 - 18:50May 6 08:30 - 17:40 May 7 08:30 - 18:20
Registered Delegates are Entitled to:Opening Ceremony, Welcome Reception/Banquet and Closing CeremonyAttendance to SessionsEntrance to ExhibitionAll Congress DocumentsCoffee BreaksForbidden City Tour
Name Badges and TicketsFor security purposes, delegates and exhibitors must wear their name badges at all times during the congress. Entrance to the meeting room will be limited to badge holders only. Tickets for social events and excursions will be issued to delegates who have booked for these events. Please present your tickets at these events and excursions.
AbstractsThe abstracts are available on a USB stick which is included in the registration package for registered delegates.
Program ChangesThe organisers cannot accept liability for any changes in the program due to external or unforeseen circumstances.
Oral PresentationsOnly LCD computer projectors are used for oral sessions. The congress session computers are running Windows XP and PowerPoint 2007. Speakers must go to the Speaker Ready Room at least one day prior to their talks to load their powerpoints onto the congress computers. The Speaker Ready Room is Room 409, 4th Floor. The room will keep opening with a technician present during the following time slots:May 4 14:30 - 17:30May 5 08:30 - 18:50May 6 08:30 - 17:40May 7 08:30 - 12:10
Poster PresentationsRefer to the poster numbers in this program for board assignments. Authors are expected to supply scotch tape to mount
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their posters. Posters must be in place by 16:30 on May 5 at the Poster Area and removed at 17:40 on May 7. To assure all attendees to have time for viewing posters, please do not remove posters ahead of the designed time. All the posters have the opportunities to join the competition of the AOHUPO 2012 Excellent Poster Award. 30 posters will be awarded in the Closing Ceremony. Each award will equal RMB 500. Poster presentation time:May 6 12:10 - 14:00 May 7 12:10 - 14:00
Duplication, RecordingWithout permission from authors, taking photographs, audio-taping, video-recording, digital taping and any other form of duplication are strictly prohibited in the session rooms and poster areas.
Mobile PhonesParticipants are kindly requested to turn off their cell phones or keep the cell phones in vibration state when entering the congress rooms and in the poster area.
Smoking PolicyIn the China National Convention Center, smoking is prohibited. Smoking is only permitted in a few designated areas outside the building.
Internet AccessA free Internet room will be opened during the congress hours in the Plenary Hall A-Po.
CateringSome specified meal tickets are included in the registration package for registered delegates. Please refer to the table below for the location and times. Please note that our generous sponsors will also provide meals at the Industry Workshops on May 6-7 with pre-assignment at their booths.
May 5 May 6 May 7
Lunch At delegates’ own expense
Exhibition Hall 6, B1 Floor Exhibition Hall 5, B1 Floor 12:10 - 13:30 12:10 - 13:30
Dinner
Ballroom A, 1st Floor Nine Dynasty Restaurant At delegates’ own expense
19:00 - 21:00 17:40 - 20:00 (Invited)
L4 Lobby, 4th Floor L4 Lobby, 4th Floor Coffee Break --- 09:50 - 10:10 09:50 - 10:10 16:00 - 16:20 16:00 - 16:20
STAFF BrigadeA team of enthusiastic students will be at your service. During the congress hours, they will provide hospitality support and steward services. They will also serve in most of the meeting rooms as technical assistants and can be easily recognized by their shirts of STAFF.
TimeBeijing is 8 hours ahead of Greenwich Mean Time.
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6th Congress, Beijing, ChinaMay 5-7, 2012
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Weather May is the best month for weather condition in Beijing. Typically, it is neither hot nor cold – just the perfect time to stay and visit in Beijing and elsewhere in China. The average temperature in Beijing in May is 20℃.The average highest temperature is 25℃and the average lowest temperature is 17℃.
Water It is not recommended to directly drink the water from the tap in your hotel room or at the congress area. If you want to drink cold water, it is best to order or buy bottled water, mineral or distilled water. Hotels generally provide an electrically heated kettle to boil water from the tap in your room. Some hotels also provide a special tap in the lavatory that delivers a flow of purified water for drinking.This advice also applies to your pre-congress or post-congress travel in other cities in China.
Voltage, Socket and PlugsThe electrical current in China is 220-volts, 50HzA/C. Hotels generally provide wall sockets in every room, accommodating both the standard “Flat blade attachment plug (Type A)”and common “Oblique flat blades with ground(inverted V) plug (Type I)”as well as the not-so-common “Round pin attachment plug (Type C)”as shown in following photographs.
CurrencyThe local currency is the RMB. Visa and MasterCard are accepted at the Registration Desk. Foreign currency will not be accepted. You are requested to pay with cash in RMB or credit card. The amount debited from your account will vary due to fluctuations in the exchange rate. There is normally a 4% additional bank charge. Participants can exchange their currencies at airports, major hotels and banks in China. The exchange rate will be given daily by the Bank of China. Currently, 1USD can be exchanged for about 6.3 RMB yuan. All currency exchange receipts should be saved in case participants want to exchange RMB back to their own currency. Banks may demand to see the original exchange receipt.
EmergenciesIf you or any other delegate is unwell, an accident or any other emergency occurs, while at the China National Convention Center, please contact the Registration Desk or any staff member.
Lost PropertyIf you see any unattended parcel, please report to one of the congress staff members. If you lose anything at the China National Convention Center, please enquire at the Registration Desk.
InsuranceThe congress organisers recommend participants to posses travel, property medical or other necessary insurances before coming to China. The 6th AOHUPO Congress Organisers cannot be held responsible for the costs resulting from personal accidents or property loss during the congress.
Wall socket Type A plug Type I plug Type C plug
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HotlinesPhone number110 Police114 Local Telephone Number Inquiry117 Time Inquiry119 Fire120 Ambulance121 Weather Forecast122 Traffic Police
How to Reach the China National Convention CenterAddress: No.7 Tianchen East Road, Chaoyang District, Beijing China
Subway line 8 Olympic Green direct entrance CNCC (Exit A、D、E), about 26km to Beijing Capital International Airport, 25 minutes.
Bus: 328、484、628、630、419、913、379 get off at Walinankou Station.
A) Beijing Railway Station - China National Convention Center
Subway line 2: Beijing Station-Yonghegong Lama Temple Stat ion, t ransfer l ine 5 to Huixinxijie Nankou Station, transfer line 10 to Beitucheng Station, finally transfer line 8 to Olympic Green Station.
B) Beijing West Railway Station - China National Convention Center
Subway line 1: Military Museum-Fuxinmen Station, transfer line 2 to Yonghegong Lama Temple Station, transfer line 5 to Huixinxijie Nankou Station, transfer line 10 to Beitucheng Station, finally transfer line 8 to Olympic Green Station.
C) Beijing South Railway Station - China National Convention Center
Subway line 4: Fuxinmen Station, transfer line 10 to Beitucheng Station, finally transfer line 8 to Olympic Green Station.
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6th Congress, Beijing, ChinaMay 5-7, 2012
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Please take me to the China National Convention Center Grand Hotel
Please take me to the InterContinental Beijing Beichen
Please take me to the China National Convention Center
Place Card
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Congress Agenda
Time Program Venue
May 4, 2012 08:30-21:00 Registration L4 Olympic Green Foyer
08:30-17:20 International Interactome Initiative (I3) Workshop Room 401
May 5, 2012 08:00-09:50 2nd AOHUPO hESC-MPI Workshop Room 401
08:30-16:30 Registration L4 Olympic Green Foyer
09:15-16:15 5th C-HPP Consortium Workshop Room 402AB
10:00-16:15 Education & Training Workshop Room 301AB
16:30-17:00 Opening Ceremony
17:00-18:20 Plenary Lecture Plenary Hall A
18:20-18:50 10th Anniversary for CNHUPO & Release of Special Book “Liver Proteome”
19:00-21:00 Welcome Reception/Banquet Ballroom A
May 6, 2012 08:30-09:50 Plenary Lecture Plenary Hall A
09:50-10:10 Coffee Break L4 Lobby
10:10-12:10 Plenary Lecture Plenary Hall A
Industrial Workshop: ThermoFisher Auditorium
The Impact of High-Performance Mass Spectrometry in Biology Research
12:10-14:00
Posters Plenary Hall A-Po
Exhibitions L4 Lobby
12:30-13:30 AOHUPO Council Meeting Room 401
Parallel Sessions
Session 1: Advancement of Biomarkers Research for Disease and Drugs Plenary Hall A
14:00-16:00 Session 2: Biomarkers of Disease and Personalized Medicine Auditorium
Session 3: Proteomics of Model Organisms and Other Plants & Microorganisms Room 402AB
Session 4: Chemical Proteomics and Drug Discovery Room 301AB
16:00-16:20 Coffee Break L4 Lobby
16:20-17:40 Plenary Lecture Plenary Hall A
17:40-20:00 Expert Hospitality Dinner (INVITED ONLY) Nine Dynasty Restaurant
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Time Program Venue
May 7, 2012 08:30-09:50 Plenary Lecture Plenary Hall A
09:50-10:10 Coffee Break L4 Lobby
Parallel Sessions
10:10-12:10
Session 5: Post-translational Modifications Plenary Hall A
Session 6: Glycoproteins and Glycans: Structure, Function and Applications Auditorium
Session 7: Proteomics and Clinical Application Room 402AB
Industrial Workshop: AB SCIEX Auditorum
Pushing the Limits in Proteomics Workflows
12:10-14:00
Posters Plenary Hall A-Po
Exhibitions L4 Lobby
Parallel Sessions
14:00-16:00 Session 8: Quantitative and Targeted Proteomics and System Biology Plenary Hall A
Session 9: Proteomics: New Approaches and Novel Techniques Auditorium
14:00-16:05
Session 10: Bioinformatics: Databases, Post-translation Modifications, Room 402AB
Quantification and Validation
16:00-16:20 Coffee Break L4 Lobby
16:20-17:40 Plenary Lecture Plenary Hall A
17:40-18:10 Closing Ceremony
May 8, 2012
08:30-12:10 Tour Forbidden City
Congress Agenda
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Plenary Lecture Program
Time Speaker and Title
May 5, 2012Chair: Fuchu He, Beijing Proteome Research Center; Beijing Institute of Radiation Medicine, China
17:00-17:40 Aaron Ciechanover
Faculty of Medicine, Technion-Israel Institute of Technology, Israel
Title: Why Our Proteins Have to Die so We shall Live or the Ubiquitin Proteolytic System - From
Basic Mechanisms thru Human Diseases and onto Drug Development
17:40-18:20 Xiaodong Wang
National Institute of Biological Sciences, China
Title: Understanding Cell Death
May 6, 2012
Chair: Kazuyuki Nakamura, Yamaguchi University Graduate School of Medicine, Japan
08:30-09:10 Daniel W. Chan
Johns Hopkins Medical Institutions, USA
Title: Translating Proteomics into the Clinical Laboratory: The Future Is Now
09:10-09:50 Kunliang Guan
Fudan University, China; University of California, San Diego, USA
Title: Protein Lysine Acetylation in Metabolism Regulation
Chair: Yukui Zhang, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, China
10:10-10:50 Leroy Hood
Institute for Systems Biology, USA
Title: Systems Biology, Transformational Technologies and the Emergence of Proactive P4 Medicine
10:50-11:30 Ruedi Aebersold
ETH Zurich and University of Zurich, Switzerland
Title: Mass Spectrometry Based Proteomics and Systems Biology
11:30-12:10 Pierre Legrain
Ecole Polytechnique, France
Title: From Genes and Proteins to Human Being: Can We Revisit the Role of Heredity?
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Time Speaker and Title
May 6, 2012
Chair: Richard J. Simpson, La Trobe University, Australia
16:20-17:00 Gilbert S. Omenn
University of Michigan, USA
Title: Role of the HUPO Human Proteome Project in Advancing the Field of Proteomics
17:00-17:40 Young-Ki Paik
Yonsei Proteome Research Center, Korea
Title: A Chromosome-Centric Human Proteome Project to Characterize the Sets of Proteins
Encoded in the Genome
May 7, 2012Chair: Zihe Rao, Tsinghua University, China
08:30-09:10 Tom L. Blundell
University of Cambridge, UK
Title: The Structural Proteome and Drug Discovery: Chemical Tools for Targeting Protein Networks
09:10-09:50 John R. Yates
The Scripps Research Institute, USA
Title: Protein Quantitation Using Stable Isotope Labeling in Mammals
Chair: Young-Ki Paik, Yonsei Proteome Research Center, Korea
16:20-17:00 Guangbiao Zhou
Institute of Zoology, Chinese Academy of Sciences, China
Zhu Chen
Shanghai Jiao Tong University School of Medicine; Minister of Health, China
Title: Synergistic Targeting Therapies against Oncoproteins for Acute Myeloid Leukemia
17:00-17:40 Denis Hochstrasser
Geneva University Hospital, Switzerland
Title: Clinical Mass Spectrometry & Proteomics
Plenary Lecture Program
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Parallel Session Programs
14:00-16:00, May 6, 2012Plenary Hall A
Session 1: Advancement of Biomarkers Research for Disease and DrugsChairs: Maxey C.M. Chung & Terence C.W. Poon
Time Speaker and Title14:00-14:20 Maxey C.M. Chung
National University of Singapore, Singapore
Title: Mining the Gastric Fluid and Gastric Secretome for Potential Diagnostic Markers for the
Detection of Early Gastric Cancer
14:20-14:40 György Marko-Varga
Lund University, Sweden
Title: Biomarker Diagnostics Developments for Targeted Drug Treatments
14:40-15:00 Terence C.W. Poon
The Chinese University of Hong Kong, Hong Kong SAR, China
Title: Serum N-Glycomic Fingerprint for the Diagnosis of Liver Fibrosis and Liver Cirrhosis in
Patients with Chronic Hepatitis B Infection before and after Antiviral Treatment
15:00-15:20 Siqi Liu
Beijing Institute of Genomics, Chinese Academy of Sciences, China
Title: The Cascade Changes of Functional Molecules in Gastric Cancer Cells: Mutation Linkage of
Genomics and Proteomics
15:20-15:40 Chan-Wha Kim
Korea University, Korea
Title: Transgelin Promotes Migration and Invasion of Cancer Stem Cells
15:40-16:00 Canhua Huang
West China Hospital, Sichuan University, China
Title: Proteomic Annotation of the Metabolic and Oxidative Stresses in Tumor Initiation and
Progression
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Parallel Session Programs
14:00-16:00, May 6, 2012Auditorium
Session 2: Biomarkers of Disease and Personalized MedicineChairs: Mark Baker & Jisnuson Svasti
Time Speaker and Title14:00-14:20 Mark Baker
Macquarie University, Australia
Title: Membrane Proteomics: Peeking into the Pandora’s Box of Cancer Metastasis
14:20-14:40 Xuemin Zhang
National Center of Biomedical Analysis, China
Title: The Mechanistic Linkage between Inflammation and Tumorigenesis
14:40-15:00 Kazuyuki Nakamura
Yamaguchi University Graduate School of Medicine, Japan
Title: Disease Biomarker Discovery: HSP27 for Diagnostics and Therapeutics of Pancreatic Cancer
15:00-15:20 Dacheng He
Beijing Normal University, China
Title: Chronological Protein Expression in Liver Regeneration
15:20-15:40 Guangyan Cai
Chinese PLA General Hospital, China
Title: Characterization of Glomerular Diseases Using Proteomic Analysis Methods
15:40-16:00 Xianchun Wang
Hunan Normal University, China
Title: Identification and Validation of Rab3A as a New Interacting Partner of Synaptotagmin I:
Implications in the Regulation of Synaptic Vesicle Exocytosis
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14:00-16:00, May 6, 2012 Room 402AB
Session 3: Proteomics of Model Organisms and Other Plants & MicroorganismsChairs: Ravi Sirdeshmukh & Ghasem Hosseini Salekdeh
Time Speaker and Title14:00-14:20 Ghasem Hosseini Salekdeh
Royan Institute for Stem Cell Biology and Technology, Iran
Title: Quantitative Proteome and Transcriptome Analysis of Human Embryonic Stem Cells
Differentiation to Neural Cells
14:20-14:40 Yhong-Hee Shim
Konkuk University, Korea
Title: Proteomic Analysis of Sperm Proteins Controlled by IFE-1, A germline-specific Isoform of
eIF4E, in C. elegans
14:40-15:00 Xuanxian Peng
Yat-sen Sun University, China
Title: Proteomics Mechanisms of Bacterial Antibiotic Resistances
15:00-15:20 Vengatesen Thiyagarajan
The University of Hong Kong, Hong Kong SAR, China
Title: Marine Environmental Proteomics and Its Applications for Climate Change
15:20-15:40 Jahanbakhsh-Godehkahriz
University of MohagheghArdabili, Iran
Title: Proteomic Analysis of Porphobilinogen (PBG) Deaminase& 3-oxoacyl-[acyl-carrier-protein]
Synthase I (KAS I) in Cheyenne Winter Wheat under Prolonged Low temperature
15:40-16:00 Yingchun Wang
Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, China
Title: Proteomic Identification of Slr0110-regulated Proteins that are Necessary for Heterotrophic
Growth of Synechocystis sp. PCC6803
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Parallel Session Programs
14:00-16:00, May 6, 2012Room 301AB
Session 4: Chemical Proteomics and Drug DiscoveryChairs: Ho Jeong Kwon & Qingyu He
Time Speaker and Title14:00-14:25 Guoqiang Chen
Shanghai Jiao Tong University School of Medicine, China
Title: Natural Product Adenanthin Specifically Targets Peroxiredoxin I/II for Its Anti-leukemic
Activities
14:25-14:50 Ho Jeong Kwon
Yonsei University, Korea
Title: Chemical Proteomics Based Target Identification of a Natural Anti-angiogenic Small Molecule
14:50-15:15 Qingyu He
College of Life Science and Technology, Jinan University, China
Title: Mitochondria Are a Major Target of the Anti-Cancer Agents Derived from Traditional
Chinese Medicine (TCM)
15:15-15:30 Lixin Zhang
Institute of Microbiology, Chinese Academy of Sciences, China
Title: Bioprospecting Natural Products for Potential Anti-Infective Drugs
15:30-15:45 Lianghai Hu
College of Life Science, Jilin University, China
Title: Chemical Proteomics-based Approach for Drug Target Discovery in Living Systems
15:45-16:00 Fuyi Wang
Institute of Chemistry, Chinese Academy of Sciences, China
Title: Organometallic Ruthenium Complexes Inhibit the Enzymatic Activity of Protein Tyrosine
Phosphatase 1B via Coordination to and Subsequently Induced Oxidation of the Active Thiols
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10:10-12:10, May 7, 2012Plenary Hall A
Session 5: Post-translational ModificationsChairs: Hisashi Hirano & Jun Qin
Time Speaker and Title10:10-10:30 Hisashi Hirano
Yokohama City University, Japan
Title: Functional Analysis of Co- and Post-translational Modifications in Large Protein Complexes
10:30-10:50 Jun Qin
Beijing Proteome Research Center, China
Title: Building a Proteomics Research Facility in China
10:50-11:10 Peipei Ping
University of California at Los Angeles, USA
Title: PTM Analyses of Functional Proteomes: Linking Molecular Modifications to Cardiac
Phenotypes
11:10-11:30 Jiarui Wu
Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, China
Title: Molecular Bases for Population Variation: from SNP to SAP
11:30-11:50 Yu-Ju Chen
Institute of Chemistry, Academia Sinica, Chinese Taipei
Title: A Simple Label-free Strategy towards Comprehensive Tissue Membrane Proteomics and
Post-translational Modificome
11:50-12:10 Shimin Zhao
Fudan University, China
Title: Meatbolites Regulate Epigenetics and Signaling
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Parallel Session Programs
10:10-12:10, May 7, 2012Auditorium
Session 6: Glycoproteins and Glycans: Structure, Function and ApplicationsChairs: Hisashi Narimatsu & Haojie Lu
Time Speaker and Title10:10-10:30 Hisashi Narimatsu
Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and
Technology, Japan
Title: Large-scale Identification of N-glycosylated Proteins of Mouse Tissues and Construction
of a Glycoprotein Database, GlycoProtDB
10:30-10:50 Hyun Joo An
ChungNam National University, Korea
Title: Human Cell Surface Glycan Mapping Using Mass Spectrometry
10:50-11:10 Kay-Hooi Khoo
Institute of Biological Chemistry, Academia Sinica, Chinese Taipei
Title: Technical Developments towards Realizing Shotgun Glycoproteomics for Protein Site-specific
Glycosylation Mapping
11:10-11:30 Yinkun Liu
Fudan University, China
Title: Glyco-biomarker Screening and Further Application in Hepatopathy
11:30-11:50 Wonryeon Cho
Wonkwang University, Korea
Title: Targeted Glycoproteomics for Cancer Biomarker Discovery
11:50-12:10 Wan Huang
The Fourth Military Medical University, China
Title: Modulation of the CD147-Induced Matrix Metalloproteinases Activity: The Role of CD147
N-Glycosylation
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10:10-12:10, May 7, 2012Room 402AB
Session 7: Proteomics and Clinical ApplicationChairs: William S. Hancock & Zhinan Chen
Time Speaker and Title10:10-10:35 William S. Hancock
Northeastern University, USA
Title: Chromosome 17 as Part of the C-HPP Initiative and the Study of Oncogene (ERBB2 and EGFR)
Driven Cancer
10:35-11:00 Zhinan Chen
The Fourth Military Medical University, China
Title: Biosignatures Network and Its Novel Target Drugs
11:00-11:25 Nikhat Ahmed Siddiqui
University of Karachi, Pakistan
Title: Alzheimer’s Disease Proteomics---at the Crossroads between Promises and Problems
11:25-11:40 Tadashi Kondo
National Cancer Center Research Institute, Japan
Title: Proteomics for Biomarker Development to Personalized Medicine
11:40-11:55 Archakov Alexander
Russian Academy of Medical Sciences, Russia
Title: Three Bottlenecks in Proteomics
11:55-12:10 Jau-Song Yu
Chang Gung University, Chinese Taipei
Title: Multiplexed Quantification of 63 Proteins in Human Urine by Multiple Reaction Monitoring-
based Mass Spectrometry for Discovery of Potential Bladder Cancer Biomarkers
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Parallel Session Programs
14:00-16:00, May 7, 2012Plenary Hall A
Session 8: Quantitative and Targeted Proteomics and System BiologyChairs: Visith Thongboonkerd & Xiaohong Qian
Time Speaker and Title14:00-14:20 Catherine Costello
Boston University School of Medicine, USA
Title: Determination of Differential Phosphorylation and Biological Responses to EGF and Nucleotides
14:20-14:40 Xiaohong Qian
Beijing Proteome Research Center; Beijing Institute of Radiation Medicine, China
Title: Biological Mass Spectrometry Based Strategies for Qualitative and Quantitative Analysis of
Core Fucosylated Glycoproteins
14:40-15:00 Visith Thongboonkerd
Mahidol University, Thailand
Title: Applications of Proteomics to Kidney Stone Disease
15:00-15:20 Hanfa Zou
Dalian Institute of Chemical Physics, Chinese Academy of Sciences, China
Title: Method Development for Qualitative and Quantitative Phosphoproteome
15:20-15:40 Peng Xie
Chongqing Medical University, China
Title: The Proteomics and Metabonomics Research of Major Depressive Disorder
15:40-16:00 Jianke Li
Chinese Academy of Agricultural Sciences, China
Title: Comparative Analysis of Nuclear Proteomes between Honeybee (Apis Mellifera L.) Queen and
Worker Larvae
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14:00-16:00, May 7, 2012Auditorium
Session 9: Proteomics: New Approaches and Novel TechniquesChairs: Bill Jordan & Ajay Kohli
Time Speaker and Title14:00-14:20 Bill Jordan
Victoria University of Wellington, New Zealand
Title: Membrane Proteomes: Analysis and Metabolic Functions
14:20-14:40 Richard J. Simpson
La Trobe University, Australia
Title: Purification and Characterisation of Two Discrete Exosome Populations from the Human
Colon Cancer LIM1863 Cell Line
14:40-15:00 Yukui Zhang
Dalian Institute of Chemical Physics, Chinese Academy of Sciences, China
Title: Novel Materials, Methods and Platforms for Separation, Identification and Quantitation of
Proteomes
15:00-15:20 Eugene N. Nikolaev
Institute for Energy Problems of Chemical Physics, Russian Academy of Sciences, Russia
Title: The New Possibilities of FT ICR in Very High Resolution Mass Spectrometry of Peptides and
Proteins. Fine Structure of Peptides Mass Spectra and Isotopic Resolution of Near 200kDa Proteins
15:20-15:40 Mengqiu Dong
National Institute of Biological Sciences, China
Title: An Integrated High-throughput Workflow for Identification of Crosslinked Peptides from
Complex Samples
15:40-16:00 Rao V. L. Papineni
Carestream Health, Inc., USA
Title: Non Invasive Functional Molecular Imaging-Illuminate the Myeloperoxidase Enzyme Activity
During Ovarian Cancer Mouse Model Tumorigenesis
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14:00-16:05, May 7, 2012Room 402AB
Session 10: Bioinformatics: Databases, Post-translation Modifications, Quantification and Validation
Chairs: Pierre-Alain Binz & Weimin Zhu
Time Speaker and Title14:00-14:25 Pierre-Alain Binz
Swiss Institute of Bioinformatics, Switzerland
Title: Believe in Proteomics Results: On the Need for Data and Information Sharing
14:25-14:50 Weimin Zhu
Taicang Institute of Life Science Information, China
Title: Stories of Peptide/Protein Sequences – Protein Annotations
14:50-15:05 Lisitsa Andrey
Institute of Biomedical Chemistry, Russia
Title: Knowledgebase for Single Chromosome Proteins
15:05-15:20 Hongwei Xie
National University of Defense Technology, China
Title: Share the ppb Level Accuracy in Common LC-MS Analysis
15:20-15:35 Juan Pablo Albar
National Center for Biotechnology – CSIC, Spain
Title: Automatic Reporting and Reproducibility Analysis Using the ProteoRed “MIAPE extractor” Tool
15:35-15:50 Dong Li
Beijing Proteome Research Center, China
Title: Bioinformatics for Interactomics: Knowledge Mining from Large-scale Protein-protein
Interaction Networks
15:50-16:05 Will Dracup
Nonlinear Dynamics Ltd., UK
Title: A Radical New Approach to Proteomic Experiment Design and Execution that Maximises the
Likelihood of Clinical Impact
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Workshop Programs
International Interactome Initiative (I3) Workshop
Time: 08:30-17:20, May 4, 2012
Venue: Room 401, China National Convention Center
Chairs: Benoit Coulombe, Xiaoming Yang and Jun Qin
Schedule:
08:30-08:35 Greetings from the Local Host: Jun Qin, BPRC, China
08:35-08:45 Introduction to International Interactome Initiative (I3) on Cardiometabolic Diseases Benoit Coulombe, Institut de Recherches Cliniques de Montréal, Canada
Part 1 Chair: Benoit Coulombe08:45-09:10 Mapping and Systematic Monitoring of the Protein Interactome Underlying Cardiometabolic Diseases to Accelerate Biomarker Discovery and Personalized Drug Treatment —Global introduction and experimental approach to interactome mapping Benoit Coulombe, Institut de Recherches Cliniques de Montréal, Canada
09:10-09:35 Bioinformatics and Computational Analysis of Protein Interaction Data Mathieu Blanchette, McGill University, Canada
09:35-10:00 Mass Spectrometry-SRM of Biomarkers in Clinical Samples Denis Faubert, Institut de Recherches Cliniques de Montréal, Canada
10:00-10:25 Clinical Aspects of Biomarker Discovery in Type 2 Diabetes Marie-Soleil Gauthier, Institut de Recherches Cliniques de Montréal, Canada
10:25-10:35 Coffee Break
Part 2 Chair: Xiaoming Yang10:35-11:00 Analysis of Mammalian Endogenous Complexome Jun Qin, Beijing Proteome Research Center, China
11:00-11:25 Protein-protein Interactions between Host and Yersinia pestis Ruifu Yang, Beijing Institute of Microbiology and Epidemiology, China
11:25-11:50 Study on Mitochondrial Intermembrane Space Protein Network Miao Yu, Beijing Institute of Radiation Medicine, China
11:50-13:00 Lunch and Rest
13:00-13:25 Transcription Factor Interactome Network in Human Hematopoietic Stem Cell Changyan Li, Beijing Institute of Radiation Medicine, China
13:25-13:50 Functional Research of Human Liver Protein-protein Interaction Network Jian Wang, Beijing Proteome Research Center, China
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6th Congress, Beijing, ChinaMay 5-7, 2012
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Part 3 Chair: Jun Qin13:50-14:15 Protein Interactome Analysis Reveals HIP-55/14-3-3 Complex as a Potential Regulator of Tumorigenesis in Non-small Cell Lung Cancer Zijian Li, Peking University Third Hospital, China
14:15-14:40 MeCP2 Is Regulated by Phosphorylation and Does Not Stably Associate with SWI/SNF Chromatin- Remodeling Complex Keping Hu, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences, China
14:40-15:05 A Novel Histone H4 Binding Activity and Transcriptional Regulatory Function for Signal Recognition Particle Subunits SRP68 and SRP72 Jiemin Weng, East China Normal University, China
15:05-15:30 Protein Phosphorylation and Regulatory Swith Yixue Li, Shanghai Information Center for Life Science, CAS, China
15:30-15:55 Bioinformatics for I3: Construction, Data Management and Knowledge Mmining for the Large-scale Protein- protein Interaction Datasets Dong Li, Beijing Proteome Research Center, China
15:55-16:20 High-Performance Mass Spectrometry as a Tool for Modular Cell Biology Andreas FR Huhmer, Thermo Fisher Scientific
16:20-16:35 Coffee Break
16:35-17:20 Discussion and Future Plan Chairs: Benoit Coulombe, Xiaoming Yang and Jun Qin
18:00-20:00 Dinner and Further Discussion (INVITED ONLY)
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2nd AOHUPO hESC-MPI Workshop(AOHUPO human Embryonic Stem Cell-Membrane Proteome Initiative)
Time: 08:00-09:50, May 5, 2012
Venue: Room 401, China National Convention Center
Chairs: Ghasem Hosseini Salekdeh, Yu-Ju Chen
Host: Ying Jiang
Theme: Current Status and Future Direction of AOHUPO hESC-MPI
Schedule: 08:00-08:05 Greetings from the Local Host Ying Jiang, Beijing Proteome Research Center, China
08:05-08:15 Brief Summary of the Multi-lab Data for the AOHUPO MPI Bill Jordan, Chair of AOHUPO MPI, Victoria University of Wellington, New Zealand
08:15-08:30 Proteomics of Undifferentiated & Neuronally-differentiating Huntington Disease hESCs Mark Baker, Macquarie University, Australia
08:30-08:40 Sample Preperation for Plasma Membrane Proteome Analysis by Mass Spectrometry Songping Liang, Hunan Normal University, China
08:40-08:50 An Overview of AOHUPO hESC-MPI Ghasem Hosseini Salekdeh, AOHUPO hESC-MPI, Royan Institute for Stem Cell Biology and Technology, Iran
08:50-09:05 AOHUPO hESC MPI Sample Preparation Yu-Ju Chen, Co-chair of AOHUPO hESC-MPI, Academia Sinica, Chinese Taipei
09:05-09:15 Proteomic Analysis on AOHUPO hESC MPI Sample Ying Jiang, Beijing Proteome Research Center, China
09:15-09:25 Brief Summary Report of Mitochondria Sample Run Maxey C.M. Chung, National University of Singapore, Singapore
09:25-09:35 Integration of AOHUPO hESC MPI data Yu-Ju Chen, Co-chair of AOHUPO hESC-MPI, Academia Sinica, Chinese Taipei
09:35-09:50 Discussion
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6th Congress, Beijing, ChinaMay 5-7, 2012
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5th C-HPP Consortium Workshop(The Chromosome-Centric Human Proteome Project)
Time: 09:15-16:15, May 5, 2012Venue: Room 402AB, China National Convention CenterChairs: Young-Ki Paik, William S. Hancock and György Marko-VargaHost: Fuchu HeTheme: Setting out the Standard Guidelines and the Milestones for the C-HPPGoals: Completion of the Organisation and Working Formats for the C-HPP
Schedule:09:15-09:20 Greetings from the Local Host: Fuchu He, BPRC, China
09:20-09:35 Strategic Directions for the C-HPP as Part of the Overall Human Proteome Project (HPP) Gil Omenn, Chair of HPP Consortium, University of Michigan, USA
09:35-09:45 Update on the Progress of the C-HPP Consortium Young-Ki Paik, Chair of C-HPP Consortium, YPRC, Korea
09:45-10:15 Genetic Variants from Next Generation, Whole Genome DNA Sequencing Datasets: A 1000 Genomes Perspective Charles Lee, Co-Chair of 1000 Genome Project, Harvard Medical School, USA
10:15-11:45 Key Issues on the Execution of the C-HPP Guidelines (e.g., Bioinformatics) Co-Chaired by William S. Hancock, Gil Omenn and Pierre Legrain
● Consensus on the governance and completion of the structure (Committees, WG etc.) ● Data Management (to address the questions how the data generated in the specific chromosome projects will be transferred to the three pillar databases, what quality criteria should be applied etc.) -see also C-HPP guideline paper (Paik et al., 2012, JPR, 11(4):2005-13) ● General Experimental Procedures ● Resources: Abs and Reagents (Eduardo Nice and more) ● Bioinformatics and Web Portal (Seul-Ki Jeong, Robert J. A. Goode,, more)
● Coordination with B/D-HPP, HPP Resource Pillars, and Other HUPO Initiatives (HAI, PSI etc)
11:45-13:45 Luncheon Symposium
11:45-13:45 Progress Report on Each Chromosome Team
Part I: Chair, György Marko-Varga, Co-Chair of C-HPP Consortium, Sweden
Chr 1 (China) CAPE (Chromosome-Assembled Proteome Encyclopedia) and Its Highlight with Chromosomes 1 and 8 Fuchu He, BPRC, China
Chr 2 (Switzerland) Pierre-Alain Binz, SIB, Switzerland
Chr 3 (Japan) Chromome 3 and the Disease-Related Proteins Discovered Using Laser-Microdissected (LMD) Lung- Carcinoma FFPE tissues
Toshihide Nishimura/Hiromasa Tojo/Kazuyuki Nakamura, Tokyo Medical University, Japan
Chr 7 (ANZ) Down Under Chromosome 7 Mark Baker, Macquarie University, Australia and Bill Jordan, Victoria University of Wellington, New Zealand
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Part II: Chair, Pierre Legrain, Ecole Polytechnique, France
Chr 11 (Korea) Human Proteome Project for Chromosome 11 in Human Brain Tissue Jong Shin Yoo, KBSI, Korea
Chr 12 (Thailand) Introduction of Chromosome 12 Initiative Visith Thongboonkerd, Mahidol University, Thailand
Chr 13 (Korea) Progress on Chr 13 HPP Young-Ki Paik, YPRC, Korea
Chr 16 (Spain) Spanish HPP Consortium: Current Developments on the Characterization of the Proteins Encoded by the Chromosome 16
Juan Pablo Albar, Madrid, Spain
Chr 17 (USA) Progress on Chr 17 HPP William S. Hancock, Northeastern University, USA
Part III: Chair, Fuchu He, BPRC, China
Chr-18 (Russia) Proteome of 18th Chromosome in Plasma, Liver and HepG2 Cells Investigated by SRM/MRMs Alexander Archakov, RAMS, Russia
Chr-19 (Sweden) Progress Report from Chromosome 19 György Marko-Varga, Lund University, Sweden
Chr-X (Japan) Japan Chromosome X Project (JCXP) Consortium: To Do and Done Tadashi Yamamoto, Niigata University, Japan
Chr-Y (Iran) Human Y Chromosome Proteome Project: A Genomics and Proteomics Perspective Ghasem Hosseini Salekdeh, Royan Institute for Stem Cell Biology and Technology, Iran
(Only three teams of Chr 6, 14, 21 will be missing from this workshop)
13:45-14:05 Coffee Break
14:05-14:45 Funding issues: by György Marko-Varga and Pierre Legrain Grant Situation (any granting agency for C-HPP)
14:45-15:55 Progress Reports and Publications: by William S. Hancock and Young-Ki Paik ● Progress Report Forms (standard form) (To be distributed later) ● Special Issue Publication: Jan 2013 Issue of JPR ● General guidelines for manuscript preparation and submission ● Deadline of Submission: September 30, 2012
15:55-16:15 Upcoming Boston Congress and Strategy for Session Organisation Gil Omenn, Young-Ki Paik and William S. Hancock
* Remarks: This meeting also functions as the 1st Principal Investigator Council (PIC) meeting of the C-HPP Consortium unless otherwise noted. Any decisions on the major policies and governance on the C-HPP made from this meeting would be recorded as the PIC’s decisions.
Inquiry: For Logistics and Travel Arrangement, Contact: Ping Xu, [email protected] For Programs and Presentations, Contact: Young-Ki Paik, [email protected] * This program is subject to change without notice.
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6th Congress, Beijing, ChinaMay 5-7, 2012
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Proteomics-Its Principles and ApplicationsEducation & Training Workshop
Time: 10:00-16:15, May 5, 2012Venue: Room 301AB, China National Convention Center
Chairs: Kazuyuki Nakamura, Richard Simpson
Schedule: 10:00-10:15 Introduction to IPTP Kazuyuki Nakamura, Yamaguchi University, Japan
10:15-10:30 E&T in India Ravi Sirdesmukh, Institute of Bioinformatics, ITPL, India
10:30-11:05 Genome and Proteome Siqi Liu, Beijing Institute of Genomics, CAS, China
11:05-11:40 Stem Cell Proteome Yu-Ju Chen, Institute of Chemistry, Academia Sinica, Chinese Taipei
11:40-12:15 Secretome Richard Simpson, La Trobe University, Australia
12:15-13:15 Luncheon Seminar
12:15 Software Solutions for Mining Glycoslate Proteomics Datasets David Horn, ThermoFisher
12:35 Accelerating Biomarker and Proteomics Research with TripleTOF™ 5600 System Wenhai Jin, AB SCIEX
12:55 Introducing Technologies Facilitate Biomarker Discovery and Beyond Liu Ning, Bio-Rad
13:15-14:15 Presentation by Young Scientist Travel Award Winners
13:15 Novel Strategy for Drug Target Discovery by Chemical Proteomics Approach Lianghai Hu, Jilin University, China
13:35 HollowFiber Culture System: An Alternative in Sample Preparation in Secretome Studies Qifeng Lin, National University of Singapore, Singapore
13:55 Membrane Proteomics: Opportunity for Mining Cancer Biomarkers Chia-Li Han, Institute of Chemistry, Academia Sinica, Chinese Taipei
14:15-14:50 Cancer Proteome Tadashi Kondo, National Cancer Center Research Institute, Japan
14:50-15:05 Coffee Break
15:05-15:40 Plasma Proteome Mark Baker, Macquarie University, Australia
15:40-16:15 Disease Proteomics Terence Poon, The Chinese University of Hong Kong, Hong Kong SAR, China
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10th Anniversary for CNHUPO & Release of Special Book “Liver Proteome”
Time: 18:20-18:50, May 5, 2012
Venue: Plenary Hall A, China National Convention Center
Moderator: Jun Qin
Schedule:
1. CNHUPO in a Decade
Fuchu He, Honorary President of CNHUPO, Pioneer of CNHUPO
2. Awards for the CNHUPO 10th Anniversary
Xiaohong Qian, Vice President of CNHUPO
※Distinguished Achievement Award: Fuchu He
※Distinguished Mentoring Award: Zihe Rao
※Technology Innovation Award: Yukui Zhang
※Distinguished Service Award: Pengyuan Yang
3. Introduction of “Liver Proteome – A Special Edition”
Pengyuan Yang, President of CNHUPO
4. Ceremony for the Publication of “Liver Proteome–A Special Edition”
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