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The top documents tagged [words of alignment]
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words of alignment
Heuristic Local Alignerers 1.The basic indexing & extension technique 2.Indexing: techniques to improve sensitivity Pairs of Words, Patterns 3.Systems.
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Sequence Similarity. The Viterbi algorithm for alignment Compute the following matrices (DP) M(i, j):most likely alignment of x 1 …x i with y 1 …y j.
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Evolution at the DNA level …ACGGTGCAGTTACCA… …AC----CAGTCCACCA… Mutation SEQUENCE EDITS REARRANGEMENTS Deletion Inversion Translocation Duplication.
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CS273a Lecture 8, Win07, Batzoglou Evolution at the DNA level …ACGGTGCAGTTACCA… …AC----CAGTCCACCA… Mutation SEQUENCE EDITS REARRANGEMENTS Deletion Inversion.
216 views
CS273a Lecture 11, Aut 08, Batzoglou Multiple Sequence Alignment.
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Some new sequencing technologies. Molecular Inversion Probes.
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CS273a Lecture 10, Aut 08, Batzoglou Multiple Sequence Alignment.
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CS273a Lecture 9/10, Aut 10, Batzoglou Multiple Sequence Alignment.
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Building synteny maps Recommended local aligners BLASTZ Most accurate, especially for genes Chains local alignments WU-BLAST Good tradeoff of efficiency/sensitivity.
216 views
Short Primer on Comparative Genomics Today: Special guest lecture 12pm, Alway M108 Comparative genomics of animals and plants Adam Siepel Assistant Professor.
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CS 5263 Bioinformatics
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CS 5263 Bioinformatics
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