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Common Background Contamination Ions in Mass Spectrometry · Common Observed and Predicted...

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Visit eu.fishersci.com/go/fisher-chemical Solvents Formula Accurate Mass Acetic acid C 2 H 4 O 2 60.0211 Acetone C 3 H 6 O 58.0419 Acetonitrile C 2 H 3 N 41.0265 Benzene C6H6 78.0470 Butanone (2-) C 4 H 8 O 72.0575 Carbon disulfide CS 2 75.9441 Chloroform CHCl 3 117.9144 Dichloromethane CH 2 Cl 2 83.9534 Diethyl ether C 4 H 10 O 74.0732 Diisopropyl ether C 6 H 14 O 102.1045 Dimethylformamide C 3 H 7 NO 73.0528 Dimethyl sulfoxide C 2 H 6 OS 78.0139 Ethanol C 2 H 6 O 46.0419 Ethyl acetate C 4 H 8 O 2 88.0524 Formic acid CH 2 O 2 46.0055 Glycerol C 3 H 8 O 3 92.0473 Hexane C 6 H 14 86.1096 Isopropanol C 3 H 8 O 60.0575 Methanol CH 4 O 32.0262 Propanol C 3 H 8 O 60.0575 Pyridine C 5 H 5 N 79.0422 Tetrachlorocarbon CCl 4 151.8754 Tetrachloroethylene C 2 Cl 4 163.8754 Tetrahydrofuran C 4 H 8 O 72.0575 Toluene C 7 H 8 92.0626 Trichloroethylene C 2 HCl 3 129.9144 Trifluoroacetic acid C 2 F 3 O 2 H 113.9929 Triethylamine C 6 H 15 N 101.1204 Tripropylamine C 9 H 21 N 143.1674 Xylene C 8 H 10 106.0783 Water H 2 O 18.0106 Table 1. Accurate Mass of Organic Solvents Table 2. Accurate Mass of Proton, Electron and Selected Elements Element Abbreviation Atomic Masses Electron e- 0.000549 Proton H + 1.007276 Carbon-12 C-12 12.000000 Carbon-13 C-13 13.003355 Hydrogen H 1.007825 Deuterium D 2.014101 Oxygen O 15.994915 Oxygen-18 O-18 17.999160 Nitrogen-14 N-14 14.003074 Nitrogen-15 N-15 15.000109 Sulfur-32 S-32 31.972071 Sulfur-34 S-34 33.967867 Phosphorus P 30.973762 Silicon Si 27.976927 Sodium Na 22.989769 Potassium K 38.963706 Chlorine-35 Cl-35 34.968853 Chlorine-37 Cl-37 36.965903 Bromine-79 Br-79 78.918337 Bromine-81 Br-81 80.916291 Iodine I 126.904473 Fluorine F 18.998403 Iron-54 Fe-54 53.939611 Iron-56 Fe-56 55.934938 Lithium-6 Li-6 6.015123 Lithium-7 Li-7 7.016005 Boron-10 B-10 10.012937 Boron-11 B-11 11.009305 Copper-63 Cu-63 62.929601 Copper-65 Cu-65 64.927794 Silver-107 Ag-107 106.905094 Silver-109 Ag-109 108.904756 Tin-120 Sn-120 119.902199 Cesium Cs-133 132.905450 Solvents Accurate Mass (M+H) + M+1.007276 (M+NH 4 ) + M+18.03383 M+Na) + M+22.98977 (M+K) + M+38.96371 (M+CH 3 OH+H) + M+33.03349 (M+ACN+H) + M+42.03383 (M+ACN+Na) + M+64.01632 (M+DMSO+H) + M+79.02118 (M+2ACN+H) + M+83.06037 Table 3. Common Adduct Ions in ESI Positive Mode Compounds or Species Formula [M+H] + [M+NH 4 ] + [M+Na] + [M+K] + Methanol clusters CH 3 OH 33.0335 50.0600 55.0154 70.9894 (CH 3 OH) 2 65.0597 82.0863 87.0417 103.0156 (CH 3 OH) 3 97.0859 114.1125 119.0679 135.0418 Acetonitrile clusters CH 3 CN 42.0338 59.0604 64.0158 79.9897 (CH 3 CN) 2 83.0604 100.0869 105.0423 121.0163 (CH 3 CN) 3 124.0869 141.1135 146.0689 162.0428 MeOH + H 2 O clusters (CH 3 OH)(H 2 O) 51.0446 68.0712 73.0265 89.0005 (CH 3 OH) 2 (H 2 O) 2 101.0808 118.1074 123.0628 139.0367 (CH 3 OH) 3 (H 2 O) 2 133.1071 150.1336 155.0890 171.0629 Acetonitrile + Methanol clusters (CH 3 CN)(CH 3 OH) 74.0600 91.0866 96.0420 112.0159 (CH 3 CN) 2 (CH 3 OH) 2 147.1128 164.1394 169.0947 185.0687 Dimethylformamide C 3 H 7 NO 74.0600 91.0866 96.0420 112.0159 DMSO C 2 H 6 OS 79.0212 96.0478 101.0032 116.9771 (C 2 H 6 OS) 2 157.0351 174.0617 179.0171 194.9910 (C 2 H 6 OS) 3 235.0491 252.0756 257.0310 273.0050 Acetonitrile/Formic acid (CH 3 CN)(HCOOH) 88.0393 105.0659 110.0212 125.9952 Acetonitrile/Acetic acid (CH 3 CN)(CH 3 COOH) 102.0550 119.0815 124.0369 140.0108 Acetonitrile/Dimethylformamide (CH 3 CN)(C 3 H 7 NO) 115.0866 132.1131 137.0685 153.0425 DMSO+MeCN clusters [C 2 H 6 OS+CH 3 CN] 120.0478 137.0743 142.0297 158.0036 Sodium formate CH 2 O 2 Na 90.9766 Sodium acetate C 2 H 3 O 2 Na 104.9923 (N-Methyl-2-pyrrolidone) C 5 H 10 NO 100.0757 117.1022 122.0576 138.0316 Triethylamine (TEA) C 6 H 15 N 102.1277 119.1543 124.1097 140.0836 TRIS C 4 H 11 NO 3 122.0812 139.1077 144.0631 160.0371 Dimethylaminopyridine C 7 H 10 N 2 123.0917 140.1182 145.0736 161.0476 Diisopropylethylamine C 8 H 19 N 130.1590 147.1856 152.1410 168.1149 Tripropylamine C 9 H 21 N 144.1747 161.2012 166.1566 182.1306 Phthalic anhydride C 8 H 4 O 3 149.0233 166.0499 171.0053 186.9792 Phenyldiethylamine C 10 H 15 N 150.1277 167.1543 172.1097 188.0836 1,8-Diazabicyclo[5.4.0]undec-7-ene (DBU) C 9 H 16 N 2 153.1386 170.1652 175.1206 191.0945 NaTFA C 2 F 3 O 2 Na 158.9640 Diethylene glycol monobutyl ether C 8 H 18 O 3 163.1329 180.1594 185.1148 201.0888 (C 8 H 18 O 3 ) 2 325.2585 342.2850 347.2404 363.2143 -Cyano-4-hydroxycinnamic acid (4-HCCA)-H 2 O C 8 H 5 NO 3 172.0393 189.0659 194.0212 209.9952 -Cyano-4-hydroxycinnamic acid (4-HCCA) C 10 H 7 NO 3 190.0499 207.0764 212.0318 228.0058 (C 10 H 7 NO 3 ) 2 379.0925 396.1190 401.0744 417.0483 (C 10 H 7 NO 3 ) 3 568.1351 585.1616 590.1170 606.0909 Butylated hydroxyanisole C 11 H 16 O 2 181.1223 198.1489 203.1043 219.0782 Diphenyl ketone C 13 H 10 O 183.0804 200.1070 205.0624 221.0363 Glycol ether C 8 H 18 O 3 185.1148 202.1414 207.0968 223.0707 Tributylamine C 12 H 27 N 186.2216 203.2482 208.2036 224.1775 n-Butyl benzenesulfonamide C 10 H 15 NO 2 S 214.0896 231.1162 236.0716 252.0455 Butylated hydroxytoluene C 15 H 24 O 221.1900 238.2165 243.1719 259.1459 N,N'-Dicyclohexylurea C 13 H 24 N 2 O 225.1961 242.2227 247.1781 263.1520 (C 13 H 24 N 2 O) 2 449.3850 466.4116 471.3669 487.3409 TEA.HCl 35 C 6 H 15 N.HCl 239.2249 256.2514 261.2068 277.1807 TEA.HCl 37 C 6 H 15 N.HCl 241.2219 258.2485 263.2038 279.1778 Tetrabutylammonium C 16 H 36 N 242.2842 Tributylphosphate C 12 H 27 O 4 P 267.1720 284.1985 289.1539 305.1279 Monomethoxytrityl cation C 20 H 17 O 273.1274 Triphenylphosphine oxide C 18 H 15 OP 279.0933 296.1199 301.0753 317.0492 Oleamide C 18 H 35 NO 282.2791 299.3057 304.2611 320.2350 Stearamide C 18 H 37 NO 284.2948 301.3213 306.2767 322.2507 n,n-bis(2-hydroxyethyl) dodecanamide C 16 H 33 NO 3 288.2533 305.2799 310.2353 326.2092 Oleamide C 18 H 35 NO 304.2611 321.2876 326.2430 342.2170 Dibutyl sebacate C 18 H 34 O 4 315.2530 332.2795 337.2349 353.2089 Diethylene glycol monobutyl ether C 8 H 18 O 3 325.2585 342.2850 347.2404 363.2143 Triphenyl phosphate C 18 H 15 O 4 P 327.0781 344.1046 349.0600 365.0340 Tributyl tin formate C 13 H 28 O 2 Sn 337.1184 354.1450 359.1003 375.0743 Erucamide C 22 H 43 NO 338.3417 355.3683 360.3237 376.2976 Palmitamidopropyl-trimonium chloride C 22 H 47 N 2 OCl 355.3683 372.3948 377.3502 393.3242 Behentrimonium chloride (BTAC-228) C 25 H 54 NCl 368.4251 Bis(2-ethylhexyl) adipate C 22 H 42 O 4 371.3156 388.3421 393.2975 409.2715 Dioctyl adipate C 22 H 42 O 4 371.3156 388.3421 393.2975 409.2715 Dipalmityldimethylammonium chloride C 34 H 72 NCl 494.5659 Didodecyl 3,3 -thiodipropionate C 30 H 58 O 4 S 515.4129 532.4394 537.3948 553.3687 Stearyl-palmityldimethylammonium chloride C 36 H 76 NCl 522.5972 Didodecyl 3,3 -thiodipropionate oxidized to sulfoxide C 30 H 58 O 5 S 531.4078 548.4343 553.3897 569.3637 Irganox C 35 H 62 O 3 531.4772 548.5037 553.4591 569.4331 Acetic acid-Fe-O- complex [C 2 H 4 O 2 ) 6 -6H+3Fe+O] 537.8790 554.9056 559.8610 575.8349 Didodecyl 3,3 -thiodipropionate oxidized to sulfone C 30 H 58 O 6 S 547.4027 564.4292 569.3846 585.3586 Distearyldimethylammonium chloride C 38 H 80 NCl 550.6285 Acetic acid-Fe-O- complex [(C 2 H 4 O 2 ) 6 -6H+H 2 O+3Fe+O] 555.8896 Acetic acid-Fe-O- complex [(C 2 H 4 O 2 ) 7 -6H+3Fe+O] 597.9001 3-[(3-Cholamidopropyl)dimethylammonio] -1-propanesulfonate C 32 H 58 N 2 O 7 S 615.4038 632.4303 637.3857 653.3596 Propionic acid Fe-O complex [(C 3 H 6 O 2 ) 6 -6H+3Fe+O] 621.9729 Nylon C 24 H 44 N 4 O 4 453.3435 470.3701 475.3255 491.2994 C 36 H 66 N 6 O 6 679.5117 696.5382 701.4936 717.4675 C 48 H 88 N 8 O 8 905.6798 922.7063 927.6617 943.6357 Table 4. Common Observed and Predicted Background Ions in ESI Positive Mode Compounds and Species Ions Mass of ions Fragment from acetonitrile CN - 26.0036 Formic acid HCOO - 44.9982 Acetic acid CH 3 COO - 59.0139 Phosphoric acid, and oligonucleotides or phosphopeptides PO 3 - 78.9591 Sulfuric acid and other sulfated materials SO 3 - 79.9574 Methanesulfuric acid CH 3 SO 3 - 94.9808 Sulfuric acid HSO 4 - 96.9601 Phosphoric acid, and oligonucleotides or phosphopeptides H 2 PO 4 - 96.9696 Trifluoroacetic acid, TFA CF 3 COO - 112.9856 Formic acid dimer sodiated anion [(HCOOH) 2 +Na-2H] - 112.9856 Iodine anion (Iodide) I - 126.9050 Pentafluoropropionic acid CF 3 CF 2 COO - 162.9824 n-Butyl benzenesulfonamide C 10 H 14 NO 2 S - 212.0751 Trifluoroacetic acid dimer CF 3 COOHCF 3 COO - 226.9785 Trifluoroacetic acid dimer sodiated anion [(CF 3 COOH) 2 +Na-2H] - 248.9604 Polyethylene Glycol Polypropylene Glycol Repeating Units [M+H] + [M+Na] + [M+K] + [M+H] + [M+Na] + [M+K] + 1 63.0441 85.026 100.9999 77.0597 99.0417 115.0156 2 107.0703 129.0522 145.0261 135.1016 157.0835 173.0575 3 151.0965 173.0784 189.0523 193.1434 215.1254 231.0993 4 195.1227 217.1046 233.0785 251.1853 273.1672 289.1412 5 239.1490 261.1309 277.1048 309.2272 331.2091 347.1830 6 283.1752 305.1571 321.1310 367.2690 389.2510 405.2249 7 327.2014 349.1833 365.1572 425.3109 447.2928 463.2668 8 371.2276 393.2095 409.1834 483.3528 505.3347 521.3086 9 415.2538 437.2357 453.2096 541.3946 563.3766 579.3505 10 459.2800 481.2619 497.2358 599.4365 621.4184 637.3924 11 503.3062 525.2881 541.2620 657.4784 679.4603 695.4342 12 547.3325 569.3144 585.2883 715.5202 737.5022 753.4761 13 591.3587 613.3406 629.3145 773.5621 795.5440 811.5180 14 635.3849 657.3668 673.3407 831.6039 853.5859 869.5598 15 679.4111 701.3930 717.3669 889.6458 911.6278 927.6017 16 723.4373 745.4192 761.3931 947.6877 969.6696 985.6436 17 767.4635 789.4454 805.4193 1005.7295 1027.7115 1043.6854 18 811.4897 833.4716 849.4455 1063.7714 1085.7534 1101.7273 19 855.5160 877.4979 893.4718 1121.8133 1143.7952 1159.7692 20 899.5422 921.5241 937.4980 1179.8551 1201.8371 1217.8110 Table 6. Potential Contaminant Ions from Polyethylene Glycol, H(OCH 2 CH 2 ) n OH and Polypropylene Glycol, H(OCH 2 CH 2 CH 2 ) n OH in ESI Positive Mode Compounds and Species Formula [M+H] + [M+NH 4 ] + [M+Na] + [M+K] + Dimethyl phthalate (DMP) C 10 H 10 O 4 195.0652 212.0917 217.0471 233.0211 Diethyl phthalate (DEP) C 12 H 14 O 4 223.0965 240.1230 245.0784 261.0524 Diallyl phthalate (DAP) C 14 H 14 O 4 247.0965 264.1230 269.0784 285.0524 Di-n-propyl phthalate (DPP) C 14 H 18 O 4 251.1278 268.1543 273.1097 289.0837 Di-n-butyl phthalate (DBP) C 16 H 22 O 4 279.1591 296.1856 301.1410 317.1150 Diisobutyl phthalate (DIBP) C 16 H 22 O 4 279.1591 296.1856 301.1410 317.1150 Butyl cyclohexyl phthalate (BCP) C 18 H 24 O 4 305.1747 322.2012 327.1566 343.1306 Di-n-pentyl phthalate (DNPP) C 18 H 26 O 4 307.1904 324.2169 329.1723 345.1463 Dicyclohexyl phthalate (DCP) C 20 H 26 O 4 331.1904 348.2169 353.1723 369.1463 Butyl benzyl phthalate (BBP) C 19 H 20 O 4 313.1434 330.1699 335.1253 351.0993 Di-n-hexyl phthalate (DNHP) C 20 H 30 O 4 335.2217 352.2482 357.2036 373.1776 Diisohexyl phthalate (DIHxP) C 20 H 30 O 4 335.2217 352.2482 357.2036 373.1776 Diisoheptyl phthalate (DIHpP) C 22 H 34 O 4 363.2530 380.2795 385.2349 401.2089 Butyl decyl phthalate (BDP) C 22 H 34 O 4 363.2530 380.2795 385.2349 401.2089 Di(2-ethylhexyl) phthalate (DEHP) C 24 H 38 O 4 391.2843 408.3108 413.2662 429.2402 Di(n-octyl) phthalate (DNOP) C 24 H 38 O 4 391.2843 408.3108 413.2662 429.2402 Diisooctyl phthalate (DIOP) C 24 H 38 O 4 391.2843 408.3108 413.2662 429.2402 n-Octyl n-decyl phthalate (ODP) C 26 H 42 O 4 419.3156 436.3421 441.2975 457.2715 Diisononyl phthalate (DINP) C 26 H 42 O 4 419.3156 436.3421 441.2975 457.2715 Diisodecyl phthalate ( DIDP) C 28 H 46 O 4 447.3469 464.3734 469.3288 485.3028 Diundecyl phthalate ( DUP) C 30 H 50 O 4 475.3782 492.4047 497.3601 513.3341 Diisoundecyl phthalate( DIUP) C 30 H 50 O 4 475.3782 492.4047 497.3601 513.3341 Ditridecyl phthalate (DTDP) C 34 H 58 O 4 531.4408 548.4673 553.4227 569.3967 Diisotridecyl phthalate (DITP) C 34 H 58 O 4 531.4408 548.4673 553.4227 569.3967 Table 7. Potential Contaminant Ions from Phthalates in ESI Positive Mode, Some Phthalates Form Dimer Ions. Table 5. Common Background Ions in ESI Negative Mode Triton Reduced Form of Triton Repeating Units [M+H] + [M+Na] + [M+K] + [M+H] + [M+Na] + [M+K] + 1 251.2006 273.1825 289.1565 257.2476 279.2295 295.2034 2 295.2268 317.2087 333.1827 301.2738 323.2557 339.2296 3 339.2530 361.2349 377.2089 345.3000 367.2819 383.2558 4 383.2792 405.2611 421.2351 389.3262 411.3081 427.2820 5 427.3054 449.2873 465.2613 433.3524 455.3343 471.3082 6 471.3316 493.3135 509.2875 477.3786 499.3605 515.3344 7 515.3578 537.3397 553.3137 521.4048 543.3867 559.3606 8 559.3840 581.3659 597.3399 565.4310 587.4129 603.3868 9 603.4102 625.3921 641.3661 609.4572 631.4391 647.4130 10 647.4364 669.4183 685.3923 653.4834 675.4653 691.4392 11 691.4626 713.4445 729.4185 697.5096 719.4915 735.4654 12 735.4888 757.4707 773.4447 741.5358 763.5177 779.4916 13 779.5150 801.4969 817.4709 785.5620 807.5439 823.5178 14 823.5412 845.5231 861.4971 829.5882 851.5701 867.5440 15 867.5674 889.5493 905.5233 873.6144 895.5963 911.5702 16 911.5936 933.5755 949.5495 917.6406 939.6225 955.5964 17 955.6198 977.6017 993.5757 961.6668 983.6487 999.6226 18 999.6460 1021.6279 1037.6019 1005.6930 1027.6749 1043.6488 19 1043.6722 1065.6541 1081.6281 1049.7192 1071.7011 1087.6750 20 1087.6984 1109.6803 1125.6543 1093.7454 1115.7273 1131.7012 Table 8. Potential Contaminant Ions from X-100, Triton X-114, Triton X-405, Triton X-45 C 14 H 22 O(C 2 H 4 O) n and Their Reduced Forms C 14 H 28 O(C 2 H 4 O) n in ESI Positive Mode Triton Reduced Form of Triton Repeating Units [M+H] + [M+Na] + [M+K] + [M+H] + [M+Na] + [M+K] + 1 265.2163 287.1982 303.1721 271.2632 293.2451 309.2191 2 309.2425 331.2244 347.1983 315.2894 337.2713 353.2453 3 353.2687 375.2506 391.2245 359.3156 381.2975 397.2715 4 397.2949 419.2768 435.2507 403.3418 425.3237 441.2977 5 441.3211 463.3030 479.2769 447.3680 469.3499 485.3239 6 485.3473 507.3292 523.3031 491.3942 513.3761 529.3501 7 529.3735 551.3554 567.3293 535.4204 557.4023 573.3763 8 573.3997 595.3816 611.3555 579.4466 601.4285 617.4025 9 617.4259 639.4078 655.3817 623.4728 645.4547 661.4287 10 661.4521 683.4340 699.4079 667.4990 689.4809 705.4549 11 705.4783 727.4602 743.4341 711.5252 733.5071 749.4811 12 749.5045 771.4864 787.4603 755.5514 777.5333 793.5073 13 793.5307 815.5126 831.4865 799.5776 821.5595 837.5335 14 837.5569 859.5388 875.5127 843.6038 865.5857 881.5597 15 881.5831 903.5650 919.5389 887.6300 909.6119 925.5859 16 925.6093 947.5912 963.5651 931.6562 953.6381 969.6121 17 969.6355 991.6174 1007.5913 975.6824 997.6643 1013.6383 18 1013.6617 1035.6436 1051.6175 1019.7086 1041.6905 1057.6645 19 1057.6879 1079.6698 1095.6437 1063.7348 1085.7167 1101.6907 20 1101.7141 1123.6960 1139.6699 1107.7610 1129.7429 1145.7169 Table 9. Potential Contaminant Ions from Triton X-101, C 15 H 24 O(C 2 H 4 O) n and Triton X-101R, C 15 H 30 O(C 2 H 4 O) n in ESI Positive Mode Repeating Units [M+H-CH 4 ] + [M+H] + [M+NH 4 ] + 1 58.9947 75.0260 92.0526 2 133.0135 149.0448 166.0714 3 207.0323 223.0636 240.0902 4 281.0511 297.0824 314.1090 5 355.0699 371.1012 388.1278 6 429.0887 445.1200 462.1466 7 503.1075 519.1388 536.1654 8 577.1263 593.1576 610.1842 9 651.1451 667.1764 684.2030 10 725.1639 741.1952 758.2217 11 799.1827 815.2140 832.2405 12 873.2015 889.2328 906.2593 13 947.2203 963.2516 980.2781 14 1021.2391 1037.2704 1054.2969 15 1095.2579 1111.2892 1128.3157 16 1169.2766 1185.3079 1202.3345 17 1243.2954 1259.3267 1276.3533 18 1317.3142 1333.3455 1350.3721 19 1391.3330 1407.3643 1424.3909 20 1465.3518 1481.3831 1498.4097 Table 10. Potential Contaminant Ions from Polysiloxane, (C 2 H 6 SiO) n Tween 20 Tween 40 Tween 60 Tween 80 Repeating Units [M+Na] + [M+Na] + [M+Na] + [M+Na] + 10 809.4869 865.5495 893.5808 891.5652 11 853.5131 909.5757 937.6070 935.5914 12 897.5393 953.6019 981.6332 979.6176 13 941.5656 997.6282 1025.6595 1023.6438 14 985.5918 1041.6544 1069.6857 1067.6700 15 1029.6180 1085.6806 1113.7119 1111.6962 16 1073.6442 1129.7068 1157.7381 1155.7225 17 1117.6704 1173.7330 1201.7643 1199.7487 18 1161.6966 1217.7592 1245.7905 1243.7749 19 1205.7228 1261.7854 1289.8167 1287.8011 20 1249.7491 1305.8117 1333.8430 1331.8273 21 1293.7753 1349.8379 1377.8692 1375.8535 22 1337.8015 1393.8641 1421.8954 1419.8797 23 1381.8277 1437.8903 1465.9216 1463.9060 24 1425.8539 1481.9165 1509.9478 1507.9322 25 1469.8801 1525.9427 1553.9740 1551.9584 26 1513.9064 1569.9690 1598.0003 1595.9846 27 1557.9326 1613.9952 1642.0265 1640.0108 28 1601.9588 1658.0214 1686.0527 1684.0370 29 1645.9850 1702.0476 1730.0789 1728.0632 30 1690.0112 1746.0738 1774.1051 1772.0895 31 1734.0374 1790.1000 1818.1313 1816.1157 32 1778.0636 1834.1262 1862.1575 1860.1419 Table 11. Potential Sodium Ions of Tween 20 [C 18 H 34 O 6 ][C 2 H 4 O] n Tween 40 [C 22 H 42 O 6 ][C 2 H 4 O]n Tween 60 [C 24 H 46 O 6 ][C 2 H 4 O] n and Tween 80 [C 24 H 44 O 6 ][C 2 H 4 O] n in ESI Positive Mode. Compounds and Species Structural Formula Lipid Numbers (M-H) - Decanoic acid C 10 H 20 O 2 C10:0 171.1391 Undecanoic acid C 11 H 22 O 2 C11:0 185.1547 Dodecanoic acid C 12 H 24 O 2 C12:0 199.1704 Tridecanoic acid C 13 H 26 O 2 C13:0 213.1860 Tetradecanoic acid C 14 H 28 O 2 C14:0 227.2017 Pentadecanoic acid C 15 H 30 O 2 C15:0 241.2173 Tetradecanoic acid C 16 H 32 O 2 C16:0 255.2330 Heptadecanoic acid C 17 H 34 O 2 C17:0 269.2486 Octadecanoic acid C 18 H 36 O 2 C18:0 283.2643 Nonadecanoic acid C 19 H 38 O 2 C19:0 297.2799 Eicosanoic acid C 20 H 40 O 2 C20:0 311.2956 Heneicosanoic acid C 21 H 42 O 2 C21:0 325.3112 Docosanoic acid C 22 H 44 O 2 C22:0 339.3269 Tricosanoic acid C 23 H 46 O 2 C23:0 353.3425 Tetracosanoic acid C 24 H 48 O 2 C24:0 367.3582 Caproleic acid C 10 H 18 O 2 C10:1 169.1234 Lauroleic acid C 12 H 22 O 2 C12:1 197.1547 Myristoleic acid C 14 H 26 O 2 C14:1 225.1860 Palmitoleic acid C 16 H 30 O 2 C16:1 253.2173 Oleic acid C 18 H 34 O 2 C18:1 281.2486 Gadoleic acid C 20 H 38 O 2 C20:1 309.2799 Erucic acid C 22 H 42 O 2 C22:1 337.3112 Nervonic acid C 24 H 46 O 2 C24:1 365.3425 Linoleic acid (LA) C 18 H 32 O 2 C18:2 279.2330 Linolenic acid (ALA) C 18 H 30 O 2 C18:3 277.2173 Stearidonic acid C 18 H 28 O 2 C18:4 275.2017 Mead acid C 20 H 34 O 2 C20:3 305.2486 Arachidonic acid C 20 H 32 O 2 C20:4 303.2330 Eicosapentaenoic acid (EPA) C 20 H 30 O 2 C20:5 301.2173 Docosapentaenoic acid (DPA) C 22 H 34 O 2 C22:5 329.2486 Docosahexaenoic acid (DHA) C 22 H 32 O 2 C22:6 327.2330 Table 12. Potential Contaminant Ions from Fatty Acids in ESI Negative Mode References 1. Keller, B. O.; Sui, J; Young A. B.; Whittal, R. M. Interferences and contaminants encountered in modern mass spectrometry. Analytica Chimica Acta 627 (2008) 71-81 2. Tong, H.; Bell, D.; Tabei, K.; Siegel, M.M. Automated Data Massaging, Interpretation, and E-Mailing Modules for High Throughput Open Access Mass Spectrometry. J. Am. Soc. Mass Spectrom. 10 (1999) 1174 3. http://www.newobjective.com/downloads/technotes/PV-3.pdf 4. https://www.fishersci.com/us/en/products.html Figure 1. Typical Chromatogram and Spectrum Profile of Blank Sample With Water and Methanol Gradient Acquired by Q Exactive Focus Orbitrap MS in ESI Positive Mode Figure 2. Chromatogram and Spectrum of Potential Fatty Acid Contamination in Blank Methanol Acquired in ESI Negative Mode Using Triple Quadruple Mass Spectrometry Figure 3. Potential Contaminant Ions in Organic Solvents Detected by Q Exactive Plus Orbitrap Mass Spectrometer in ESI Positive Mode Common Background Contamination Ions in Mass Spectrometry Common background contamination ions encountered in mass spectrometers are polyethylene glycol, polypropylene glycol, phthalates, organic solvent clusters, solvent modifiers, fatty acids, metal ions, tritons, tweens and siloxanes. Metal ions form adducts with varying numbers of substrates to give characteristic ESI + ions. In this poster, the accurate mass of elements, organic solvents and all potential contaminant ions observed in mass spectrometry are listed in the tables below to help troubleshoot potential contamination in LC-MS systems. 5. Mahn, B. Thermo Fisher Scientific technical support 6. Guo, X.; Bruins, A. P.; Covey, T. R. Characterization of typical chemical background interferences in atmospheric pressure ionization liquid chromatography-mass spectrometry. Rapid Commun. Mass Spectrom. 20 (2006) 3145–3150 7. http://www.proteomicsresource.washington.edu/protocols05/esi_background_ions_repeat_units.php 8. http://www.waters.com/webassets/cms/support/docs/bkgrnd_ion_mstr_list.pdf 9. John C.; Tran J. C.; Doucette A. A. Cyclic Polyamide Oligomers Extracted from Nylon 66 Membrane Filter Disks as a Source of Contamination in Liquid Chromatography/Mass Spectrometry. J Am Soc. Mass Spectrom. 17 (2006), 652– 656
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Page 1: Common Background Contamination Ions in Mass Spectrometry · Common Observed and Predicted Background Ions in ESI Positive Mode Compounds and Species Ions Mass of ions Fragment from

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Solvents Formula Accurate MassAcetic acid C2H4O2 60.0211Acetone C3H6O 58.0419Acetonitrile C2H3N 41.0265Benzene C6H6 78.0470Butanone (2-) C4H8O 72.0575Carbon disul� de CS2 75.9441Chloroform CHCl3 117.9144Dichloromethane CH2Cl2 83.9534Diethyl ether C4H10O 74.0732Diisopropyl ether C6H14O 102.1045Dimethylformamide C3H7NO 73.0528Dimethyl sulfoxide C2H6OS 78.0139Ethanol C2H6O 46.0419Ethyl acetate C4H8O2 88.0524Formic acid CH2O2 46.0055Glycerol C3H8O3 92.0473Hexane C6H14 86.1096Isopropanol C3H8O 60.0575Methanol CH4O 32.0262Propanol C3H8O 60.0575Pyridine C5H5N 79.0422Tetrachlorocarbon CCl4 151.8754Tetrachloroethylene C2Cl4 163.8754Tetrahydrofuran C4H8O 72.0575Toluene C7H8 92.0626Trichloroethylene C2HCl3 129.9144Tri� uoroacetic acid C2F3O2H 113.9929Triethylamine C6H15N 101.1204Tripropylamine C9H21N 143.1674Xylene C8H10 106.0783Water H2O 18.0106

Table 1. Accurate Mass of Organic Solvents

Table 2. Accurate Mass of Proton, Electronand Selected Elements

Element Abbreviation Atomic Masses Electron e- 0.000549Proton H+ 1.007276Carbon-12 C-12 12.000000Carbon-13 C-13 13.003355Hydrogen H 1.007825Deuterium D 2.014101Oxygen O 15.994915Oxygen-18 O-18 17.999160Nitrogen-14 N-14 14.003074Nitrogen-15 N-15 15.000109Sulfur-32 S-32 31.972071Sulfur-34 S-34 33.967867Phosphorus P 30.973762Silicon Si 27.976927Sodium Na 22.989769Potassium K 38.963706Chlorine-35 Cl-35 34.968853Chlorine-37 Cl-37 36.965903Bromine-79 Br-79 78.918337Bromine-81 Br-81 80.916291Iodine I 126.904473Fluorine F 18.998403Iron-54 Fe-54 53.939611Iron-56 Fe-56 55.934938Lithium-6 Li-6 6.015123Lithium-7 Li-7 7.016005Boron-10 B-10 10.012937Boron-11 B-11 11.009305Copper-63 Cu-63 62.929601Copper-65 Cu-65 64.927794Silver-107 Ag-107 106.905094Silver-109 Ag-109 108.904756Tin-120 Sn-120 119.902199Cesium Cs-133 132.905450

Solvents Accurate Mass(M+H)+ M+1.007276(M+NH4)+ M+18.03383M+Na)+ M+22.98977(M+K)+ M+38.96371(M+CH3OH+H)+ M+33.03349(M+ACN+H)+ M+42.03383(M+ACN+Na)+ M+64.01632(M+DMSO+H)+ M+79.02118(M+2ACN+H)+ M+83.06037

Table 3. Common Adduct Ions in ESI Positive Mode

Compounds or Species Formula [M+H]+ [M+NH4]+ [M+Na]+ [M+K]+

Methanol clusters CH3OH 33.0335 50.0600 55.0154 70.9894(CH3OH)2 65.0597 82.0863 87.0417 103.0156(CH3OH)3 97.0859 114.1125 119.0679 135.0418

Acetonitrile clustersCH3CN 42.0338 59.0604 64.0158 79.9897(CH3CN)2 83.0604 100.0869 105.0423 121.0163(CH3CN)3 124.0869 141.1135 146.0689 162.0428

MeOH + H2O clusters(CH3OH)(H2O) 51.0446 68.0712 73.0265 89.0005(CH3OH)2(H2O)2 101.0808 118.1074 123.0628 139.0367(CH3OH)3(H2O)2 133.1071 150.1336 155.0890 171.0629

Acetonitrile + Methanol clusters(CH3CN)(CH3OH) 74.0600 91.0866 96.0420 112.0159(CH3CN)2(CH3OH)2 147.1128 164.1394 169.0947 185.0687

Dimethylformamide C3H7NO 74.0600 91.0866 96.0420 112.0159

DMSO C2H6OS 79.0212 96.0478 101.0032 116.9771(C2H6OS)2 157.0351 174.0617 179.0171 194.9910(C2H6OS)3 235.0491 252.0756 257.0310 273.0050

Acetonitrile/Formic acid (CH3CN)(HCOOH) 88.0393 105.0659 110.0212 125.9952Acetonitrile/Acetic acid (CH3CN)(CH3COOH) 102.0550 119.0815 124.0369 140.0108Acetonitrile/Dimethylformamide (CH3CN)(C3H7NO) 115.0866 132.1131 137.0685 153.0425DMSO+MeCN clusters [C2H6OS+CH3CN] 120.0478 137.0743 142.0297 158.0036Sodium formate CH2O2Na 90.9766 Sodium acetate C2H3O2Na 104.9923 (N-Methyl-2-pyrrolidone) C5H10NO 100.0757 117.1022 122.0576 138.0316Triethylamine (TEA) C6H15N 102.1277 119.1543 124.1097 140.0836TRIS C4H11NO3 122.0812 139.1077 144.0631 160.0371Dimethylaminopyridine C7H10N2 123.0917 140.1182 145.0736 161.0476Diisopropylethylamine C8H19N 130.1590 147.1856 152.1410 168.1149Tripropylamine C9H21N 144.1747 161.2012 166.1566 182.1306Phthalic anhydride C8H4O3 149.0233 166.0499 171.0053 186.9792Phenyldiethylamine C10H15N 150.1277 167.1543 172.1097 188.08361,8-Diazabicyclo[5.4.0]undec-7-ene (DBU) C9H16N2 153.1386 170.1652 175.1206 191.0945NaTFA C2F3O2Na 158.9640

Diethylene glycol monobutyl etherC8H18O3 163.1329 180.1594 185.1148 201.0888(C8H18O3)2 325.2585 342.2850 347.2404 363.2143

-Cyano-4-hydroxycinnamic acid (4-HCCA)-H2O C8H5NO3 172.0393 189.0659 194.0212 209.9952

-Cyano-4-hydroxycinnamic acid (4-HCCA)C10H7NO3 190.0499 207.0764 212.0318 228.0058(C10H7NO3)2 379.0925 396.1190 401.0744 417.0483(C10H7NO3)3 568.1351 585.1616 590.1170 606.0909

Butylated hydroxyanisole C11H16O2 181.1223 198.1489 203.1043 219.0782Diphenyl ketone C13H10O 183.0804 200.1070 205.0624 221.0363Glycol ether C8H18O3 185.1148 202.1414 207.0968 223.0707Tributylamine C12H27N 186.2216 203.2482 208.2036 224.1775n-Butyl benzenesulfonamide C10H15NO2S 214.0896 231.1162 236.0716 252.0455Butylated hydroxytoluene C15H24O 221.1900 238.2165 243.1719 259.1459

N,N'-DicyclohexylureaC13H24N2O 225.1961 242.2227 247.1781 263.1520(C13H24N2O)2 449.3850 466.4116 471.3669 487.3409

TEA.HCl35 C6H15N.HCl 239.2249 256.2514 261.2068 277.1807TEA.HCl37 C6H15N.HCl 241.2219 258.2485 263.2038 279.1778Tetrabutylammonium C16H36N 242.2842Tributylphosphate C12H27O4P 267.1720 284.1985 289.1539 305.1279Monomethoxytrityl cation C20H17O 273.1274Triphenylphosphine oxide C18H15OP 279.0933 296.1199 301.0753 317.0492Oleamide C18H35NO 282.2791 299.3057 304.2611 320.2350Stearamide C18H37NO 284.2948 301.3213 306.2767 322.2507n,n-bis(2-hydroxyethyl) dodecanamide C16H33NO3 288.2533 305.2799 310.2353 326.2092Oleamide C18H35NO 304.2611 321.2876 326.2430 342.2170Dibutyl sebacate C18H34O4 315.2530 332.2795 337.2349 353.2089Diethylene glycol monobutyl ether C8H18O3 325.2585 342.2850 347.2404 363.2143Triphenyl phosphate C18H15O4P 327.0781 344.1046 349.0600 365.0340Tributyl tin formate C13H28O2Sn 337.1184 354.1450 359.1003 375.0743Erucamide C22H43NO 338.3417 355.3683 360.3237 376.2976Palmitamidopropyl-trimonium chloride C22H47N2OCl 355.3683 372.3948 377.3502 393.3242Behentrimonium chloride (BTAC-228) C25H54NCl 368.4251Bis(2-ethylhexyl) adipate C22H42O4 371.3156 388.3421 393.2975 409.2715Dioctyl adipate C22H42O4 371.3156 388.3421 393.2975 409.2715Dipalmityldimethylammonium chloride C34H72NCl 494.5659Didodecyl 3,3 -thiodipropionate C30H58O4S 515.4129 532.4394 537.3948 553.3687Stearyl-palmityldimethylammonium chloride C36H76NCl 522.5972Didodecyl 3,3 -thiodipropionate oxidized to sulfoxide C30H58O5S 531.4078 548.4343 553.3897 569.3637Irganox C35H62O3 531.4772 548.5037 553.4591 569.4331Acetic acid-Fe-O- complex [C2H4O2)6-6H+3Fe+O] 537.8790 554.9056 559.8610 575.8349Didodecyl 3,3 -thiodipropionate oxidized to sulfone C30H58O6S 547.4027 564.4292 569.3846 585.3586Distearyldimethylammonium chloride C38H80NCl 550.6285Acetic acid-Fe-O- complex [(C2H4O2)6-6H+H2O+3Fe+O] 555.8896 Acetic acid-Fe-O- complex [(C2H4O2)7-6H+3Fe+O] 597.9001

3-[(3-Cholamidopropyl)dimethylammonio]-1-propanesulfonate C32H58N2O7S 615.4038 632.4303 637.3857 653.3596

Propionic acid Fe-O complex [(C3H6O2)6-6H+3Fe+O] 621.9729

NylonC24H44N4O4 453.3435 470.3701 475.3255 491.2994C36H66N6O6 679.5117 696.5382 701.4936 717.4675C48H88N8O8 905.6798 922.7063 927.6617 943.6357

Table 4. Common Observed and Predicted Background Ions in ESI Positive Mode

Compounds and Species Ions Mass of ionsFragment from acetonitrile CN- 26.0036Formic acid HCOO- 44.9982Acetic acid CH3COO- 59.0139Phosphoric acid, and oligonucleotides or phosphopeptides PO3

- 78.9591Sulfuric acid and other sulfated materials SO3

- 79.9574Methanesulfuric acid CH3SO3

- 94.9808Sulfuric acid HSO4

- 96.9601Phosphoric acid, and oligonucleotides or phosphopeptides H2PO4

- 96.9696Tri� uoroacetic acid, TFA CF3COO- 112.9856Formic acid dimer sodiated anion [(HCOOH)2+Na-2H]- 112.9856Iodine anion (Iodide) I- 126.9050Penta� uoropropionic acid CF3CF2COO- 162.9824n-Butyl benzenesulfonamide C10H14NO2S- 212.0751Tri� uoroacetic acid dimer CF3COOHCF3COO- 226.9785Tri� uoroacetic acid dimer sodiated anion [(CF3COOH)2+Na-2H]- 248.9604

Polyethylene Glycol Polypropylene Glycol

Repeating Units [M+H]+ [M+Na]+ [M+K]+ [M+H]+ [M+Na]+ [M+K]+

1 63.0441 85.026 100.9999 77.0597 99.0417 115.01562 107.0703 129.0522 145.0261 135.1016 157.0835 173.05753 151.0965 173.0784 189.0523 193.1434 215.1254 231.09934 195.1227 217.1046 233.0785 251.1853 273.1672 289.14125 239.1490 261.1309 277.1048 309.2272 331.2091 347.18306 283.1752 305.1571 321.1310 367.2690 389.2510 405.22497 327.2014 349.1833 365.1572 425.3109 447.2928 463.26688 371.2276 393.2095 409.1834 483.3528 505.3347 521.30869 415.2538 437.2357 453.2096 541.3946 563.3766 579.350510 459.2800 481.2619 497.2358 599.4365 621.4184 637.392411 503.3062 525.2881 541.2620 657.4784 679.4603 695.434212 547.3325 569.3144 585.2883 715.5202 737.5022 753.476113 591.3587 613.3406 629.3145 773.5621 795.5440 811.518014 635.3849 657.3668 673.3407 831.6039 853.5859 869.559815 679.4111 701.3930 717.3669 889.6458 911.6278 927.601716 723.4373 745.4192 761.3931 947.6877 969.6696 985.643617 767.4635 789.4454 805.4193 1005.7295 1027.7115 1043.685418 811.4897 833.4716 849.4455 1063.7714 1085.7534 1101.727319 855.5160 877.4979 893.4718 1121.8133 1143.7952 1159.769220 899.5422 921.5241 937.4980 1179.8551 1201.8371 1217.8110

Table 6. Potential Contaminant Ions from Polyethylene Glycol, H(OCH2CH2)nOH and Polypropylene Glycol, H(OCH2CH2CH2)nOH in ESI Positive Mode

Compounds and Species Formula [M+H]+ [M+NH4]+ [M+Na]+ [M+K]+

Dimethyl phthalate (DMP) C10H10O4 195.0652 212.0917 217.0471 233.0211Diethyl phthalate (DEP) C12H14O4 223.0965 240.1230 245.0784 261.0524Diallyl phthalate (DAP) C14H14O4 247.0965 264.1230 269.0784 285.0524Di-n-propyl phthalate (DPP) C14H18O4 251.1278 268.1543 273.1097 289.0837Di-n-butyl phthalate (DBP) C16H22O4 279.1591 296.1856 301.1410 317.1150Diisobutyl phthalate (DIBP) C16H22O4 279.1591 296.1856 301.1410 317.1150Butyl cyclohexyl phthalate (BCP) C18H24O4 305.1747 322.2012 327.1566 343.1306Di-n-pentyl phthalate (DNPP) C18H26O4 307.1904 324.2169 329.1723 345.1463Dicyclohexyl phthalate (DCP) C20H26O4 331.1904 348.2169 353.1723 369.1463Butyl benzyl phthalate (BBP) C19H20O4 313.1434 330.1699 335.1253 351.0993Di-n-hexyl phthalate (DNHP) C20H30O4 335.2217 352.2482 357.2036 373.1776Diisohexyl phthalate (DIHxP) C20H30O4 335.2217 352.2482 357.2036 373.1776Diisoheptyl phthalate (DIHpP) C22H34O4 363.2530 380.2795 385.2349 401.2089Butyl decyl phthalate (BDP) C22H34O4 363.2530 380.2795 385.2349 401.2089Di(2-ethylhexyl) phthalate (DEHP) C24H38O4 391.2843 408.3108 413.2662 429.2402Di(n-octyl) phthalate (DNOP) C24H38O4 391.2843 408.3108 413.2662 429.2402Diisooctyl phthalate (DIOP) C24H38O4 391.2843 408.3108 413.2662 429.2402n-Octyl n-decyl phthalate (ODP) C26H42O4 419.3156 436.3421 441.2975 457.2715Diisononyl phthalate (DINP) C26H42O4 419.3156 436.3421 441.2975 457.2715Diisodecyl phthalate ( DIDP) C28H46O4 447.3469 464.3734 469.3288 485.3028Diundecyl phthalate ( DUP) C30H50O4 475.3782 492.4047 497.3601 513.3341Diisoundecyl phthalate( DIUP) C30H50O4 475.3782 492.4047 497.3601 513.3341Ditridecyl phthalate (DTDP) C34H58O4 531.4408 548.4673 553.4227 569.3967Diisotridecyl phthalate (DITP) C34H58O4 531.4408 548.4673 553.4227 569.3967

Table 7. Potential Contaminant Ions from Phthalates in ESI Positive Mode, Some Phthalates Form Dimer Ions.

Table 5. Common Background Ions in ESI Negative Mode

Triton Reduced Form of Triton

Repeating Units [M+H]+ [M+Na]+ [M+K]+ [M+H]+ [M+Na]+ [M+K]+

1 251.2006 273.1825 289.1565 257.2476 279.2295 295.20342 295.2268 317.2087 333.1827 301.2738 323.2557 339.22963 339.2530 361.2349 377.2089 345.3000 367.2819 383.25584 383.2792 405.2611 421.2351 389.3262 411.3081 427.28205 427.3054 449.2873 465.2613 433.3524 455.3343 471.30826 471.3316 493.3135 509.2875 477.3786 499.3605 515.33447 515.3578 537.3397 553.3137 521.4048 543.3867 559.36068 559.3840 581.3659 597.3399 565.4310 587.4129 603.38689 603.4102 625.3921 641.3661 609.4572 631.4391 647.413010 647.4364 669.4183 685.3923 653.4834 675.4653 691.439211 691.4626 713.4445 729.4185 697.5096 719.4915 735.465412 735.4888 757.4707 773.4447 741.5358 763.5177 779.491613 779.5150 801.4969 817.4709 785.5620 807.5439 823.517814 823.5412 845.5231 861.4971 829.5882 851.5701 867.544015 867.5674 889.5493 905.5233 873.6144 895.5963 911.570216 911.5936 933.5755 949.5495 917.6406 939.6225 955.596417 955.6198 977.6017 993.5757 961.6668 983.6487 999.622618 999.6460 1021.6279 1037.6019 1005.6930 1027.6749 1043.648819 1043.6722 1065.6541 1081.6281 1049.7192 1071.7011 1087.675020 1087.6984 1109.6803 1125.6543 1093.7454 1115.7273 1131.7012

Table 8. Potential Contaminant Ions from X-100, Triton X-114, Triton X-405, Triton X-45 C14H22O(C2H4O)n and Their Reduced Forms C14H28O(C2H4O)n in ESI Positive Mode

Triton Reduced Form of Triton

Repeating Units [M+H]+ [M+Na]+ [M+K]+ [M+H]+ [M+Na]+ [M+K]+

1 265.2163 287.1982 303.1721 271.2632 293.2451 309.21912 309.2425 331.2244 347.1983 315.2894 337.2713 353.24533 353.2687 375.2506 391.2245 359.3156 381.2975 397.27154 397.2949 419.2768 435.2507 403.3418 425.3237 441.29775 441.3211 463.3030 479.2769 447.3680 469.3499 485.32396 485.3473 507.3292 523.3031 491.3942 513.3761 529.35017 529.3735 551.3554 567.3293 535.4204 557.4023 573.37638 573.3997 595.3816 611.3555 579.4466 601.4285 617.40259 617.4259 639.4078 655.3817 623.4728 645.4547 661.428710 661.4521 683.4340 699.4079 667.4990 689.4809 705.454911 705.4783 727.4602 743.4341 711.5252 733.5071 749.481112 749.5045 771.4864 787.4603 755.5514 777.5333 793.507313 793.5307 815.5126 831.4865 799.5776 821.5595 837.533514 837.5569 859.5388 875.5127 843.6038 865.5857 881.559715 881.5831 903.5650 919.5389 887.6300 909.6119 925.585916 925.6093 947.5912 963.5651 931.6562 953.6381 969.612117 969.6355 991.6174 1007.5913 975.6824 997.6643 1013.638318 1013.6617 1035.6436 1051.6175 1019.7086 1041.6905 1057.664519 1057.6879 1079.6698 1095.6437 1063.7348 1085.7167 1101.690720 1101.7141 1123.6960 1139.6699 1107.7610 1129.7429 1145.7169

Table 9. Potential Contaminant Ions from Triton X-101, C15H24O(C2H4O)n and Triton X-101R, C15H30O(C2H4O)n in ESI Positive Mode

Repeating Units [M+H-CH4]+ [M+H]+ [M+NH4]+

1 58.9947 75.0260 92.05262 133.0135 149.0448 166.07143 207.0323 223.0636 240.09024 281.0511 297.0824 314.10905 355.0699 371.1012 388.12786 429.0887 445.1200 462.14667 503.1075 519.1388 536.16548 577.1263 593.1576 610.18429 651.1451 667.1764 684.203010 725.1639 741.1952 758.221711 799.1827 815.2140 832.240512 873.2015 889.2328 906.259313 947.2203 963.2516 980.278114 1021.2391 1037.2704 1054.296915 1095.2579 1111.2892 1128.315716 1169.2766 1185.3079 1202.334517 1243.2954 1259.3267 1276.353318 1317.3142 1333.3455 1350.372119 1391.3330 1407.3643 1424.390920 1465.3518 1481.3831 1498.4097

Table 10. Potential Contaminant Ions from Polysiloxane, (C2H6SiO)n

Tween 20 Tween 40 Tween 60 Tween 80

Repeating Units [M+Na]+ [M+Na]+ [M+Na]+ [M+Na]+

10 809.4869 865.5495 893.5808 891.565211 853.5131 909.5757 937.6070 935.591412 897.5393 953.6019 981.6332 979.617613 941.5656 997.6282 1025.6595 1023.643814 985.5918 1041.6544 1069.6857 1067.670015 1029.6180 1085.6806 1113.7119 1111.696216 1073.6442 1129.7068 1157.7381 1155.722517 1117.6704 1173.7330 1201.7643 1199.748718 1161.6966 1217.7592 1245.7905 1243.774919 1205.7228 1261.7854 1289.8167 1287.801120 1249.7491 1305.8117 1333.8430 1331.827321 1293.7753 1349.8379 1377.8692 1375.853522 1337.8015 1393.8641 1421.8954 1419.879723 1381.8277 1437.8903 1465.9216 1463.906024 1425.8539 1481.9165 1509.9478 1507.932225 1469.8801 1525.9427 1553.9740 1551.958426 1513.9064 1569.9690 1598.0003 1595.984627 1557.9326 1613.9952 1642.0265 1640.010828 1601.9588 1658.0214 1686.0527 1684.037029 1645.9850 1702.0476 1730.0789 1728.063230 1690.0112 1746.0738 1774.1051 1772.089531 1734.0374 1790.1000 1818.1313 1816.115732 1778.0636 1834.1262 1862.1575 1860.1419

Table 11. Potential Sodium Ions of Tween 20 [C18H34O6][C2H4O]n

Tween 40 [C22H42O6][C2H4O]n Tween 60 [C24H46O6][C2H4O]n and Tween 80 [C24H44O6][C2H4O]n in ESI Positive Mode.

Compounds and Species Structural Formula Lipid Numbers (M-H)-

Decanoic acid C10 H20 O2 C10:0 171.1391Undecanoic acid C11H22O2 C11:0 185.1547Dodecanoic acid C12H24O2 C12:0 199.1704Tridecanoic acid C13H26O2 C13:0 213.1860Tetradecanoic acid C14H28O2 C14:0 227.2017Pentadecanoic acid C15H30O2 C15:0 241.2173Tetradecanoic acid C16H32O2 C16:0 255.2330Heptadecanoic acid C17H34O2 C17:0 269.2486Octadecanoic acid C18H36O2 C18:0 283.2643Nonadecanoic acid C19H38O2 C19:0 297.2799Eicosanoic acid C20H40O2 C20:0 311.2956Heneicosanoic acid C21H42O2 C21:0 325.3112Docosanoic acid C22H44O2 C22:0 339.3269Tricosanoic acid C23H46O2 C23:0 353.3425Tetracosanoic acid C24H48O2 C24:0 367.3582Caproleic acid C10H18O2 C10:1 169.1234Lauroleic acid C12H22O2 C12:1 197.1547Myristoleic acid C14H26O2 C14:1 225.1860Palmitoleic acid C16H30O2 C16:1 253.2173Oleic acid C18H34O2 C18:1 281.2486Gadoleic acid C20H38O2 C20:1 309.2799Erucic acid C22H42O2 C22:1 337.3112Nervonic acid C24H46O2 C24:1 365.3425Linoleic acid (LA) C18H32O2 C18:2 279.2330Linolenic acid (ALA) C18H30O2 C18:3 277.2173Stearidonic acid C18H28O2 C18:4 275.2017Mead acid C20H34O2 C20:3 305.2486Arachidonic acid C20H32O2 C20:4 303.2330Eicosapentaenoic acid (EPA) C20H30O2 C20:5 301.2173Docosapentaenoic acid (DPA) C22H34O2 C22:5 329.2486Docosahexaenoic acid (DHA) C22H32O2 C22:6 327.2330

Table 12. Potential Contaminant Ions from Fatty Acids in ESI Negative Mode

References1. Keller, B. O.; Sui, J; Young A. B.; Whittal, R. M. Interferences and contaminants encountered in modern mass spectrometry. Analytica Chimica Acta 627 (2008) 71-81

2. Tong, H.; Bell, D.; Tabei, K.; Siegel, M.M. Automated Data Massaging, Interpretation, and E-Mailing Modules for High Throughput Open Access Mass Spectrometry. J. Am. Soc. Mass Spectrom. 10 (1999) 1174

3. http://www.newobjective.com/downloads/technotes/PV-3.pdf

4. https://www.fi shersci.com/us/en/products.html

Figure 1. Typical Chromatogram and Spectrum Profi le of Blank Sample With Water and Methanol Gradient Acquired by Q Exactive Focus Orbitrap MS in ESI Positive Mode

Figure 2. Chromatogram and Spectrum of Potential Fatty Acid Contamination in Blank Methanol Acquired in ESI Negative Mode Using Triple Quadruple Mass Spectrometry

Figure 3. Potential Contaminant Ions in Organic Solvents Detected by Q Exactive Plus Orbitrap Mass Spectrometer in ESI Positive Mode

Common Background Contamination Ions in Mass SpectrometryCommon background contamination ions encountered in mass spectrometers are polyethylene glycol, polypropylene glycol, phthalates, organic solvent clusters, solvent modifi ers, fatty acids, metal ions, tritons, tweens and siloxanes. Metal ions form adducts with varying numbers of substrates to give characteristic ESI+ ions. In this poster, the accurate mass of elements, organic solvents and all potential contaminant ions observed in mass spectrometry are listed in the tables below to help troubleshoot potential contamination in LC-MS systems.

5. Mahn, B. Thermo Fisher Scientifi c technical support

6. Guo, X.; Bruins, A. P.; Covey, T. R. Characterization of typical chemical background interferences in atmospheric pressure ionization liquid chromatography-mass spectrometry. Rapid Commun. Mass Spectrom. 20 (2006) 3145–3150

7. http://www.proteomicsresource.washington.edu/protocols05/esi_background_ions_repeat_units.php

8. http://www.waters.com/webassets/cms/support/docs/bkgrnd_ion_mstr_list.pdf

9. John C.; Tran J. C.; Doucette A. A. Cyclic Polyamide Oligomers Extracted from Nylon 66 Membrane Filter Disks as a Source of Contamination in Liquid Chromatography/Mass Spectrometry. J Am Soc. Mass Spectrom. 17 (2006), 652– 656

Page 2: Common Background Contamination Ions in Mass Spectrometry · Common Observed and Predicted Background Ions in ESI Positive Mode Compounds and Species Ions Mass of ions Fragment from

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