Course Code & Title: 0230502 Techniques Used in Molecular Biology II Name of the Department / Programme: Biology MSB Semester Spring Teaching Methods Credits Theory Recite Lab. Project/Area Study/Homework Quiz Mid Term Final Total National Credit ECTS Credits II 42 - - 61 30 35 72 240 3 8 Language Turkish Grade of the Lecture College () Undergraduate () Graduate M.Sc. (X) Ph.D. () Compulsory / Elective Elective Prerequisities - Course Objectives To teach techniques used in molecular biology Developed Programme Adequaciess of the Lecture CP1, CP2, CP3, CP6, CP7 Learning Outcomes 1- To learn the basic methods which used in molecular biology 2- To learn the methods of nucleic aside hibridizations 3- To learn the methods of electrophoresis and types Learning Methods and Techniques Lecture, Question-Answer, Discussion, Presentation, Problem Solving, Simulation, Seminar, Homework, Project Assessment Criteria (X) mark Percent (%) Midterm Exams X 20 Quizzes X 5 Homeworks X 5 Projects X 10 Term Paper Laboratory Work … Final Exam X 60 Week Subjects 1 2 3 4 5 6 7 8 9 10 11 12 13 14 Nucleic acid hybridization based methods; in situ hybridization Nonradioactive probes Southern blot Northern blot Extraction of proteins, their analysis and purification of proteins Protein electrophoresis; Fixation with staining; MIDTERM EXAMS Fixation on a membrane; western blot Technical problem shooting in electrophoresis; One-dimensional electrophoresis (native and denaturing PAGE), Two-dimensional electrophoresis, membrane transfer (Western blot) Determination of enzymatic analysis and activities methods Basic principles of enzymatic analysis FINAL EXAMS Course Book & References 1. Moleküler Biyolojide Kullanılan Teknikler, Prof. Dr. Güler Temizkan, Doç. Dr. Mazlı Arda, Nobel tıp bookstore, 2004 2. Molecular Clonning, A LaboratoryManual, J. Sambrook, E. F. Fritsch, T. Maniatis 3. Pricnipals of Gene Manupulations, 2001, S. B. Primrose, R. M. Twyman and R. W. Old, sixth edition, Blackwell Science.
Transcript
Course Code & Title: 0230502 Techniques Used in Molecular Biology II Name of the Department / Programme: Biology MSB
SemesterSpring
Teaching Methods Credits
Theory Recite Lab. Project/AreaStudy/Homework Quiz Mid
Term Final Total NationalCredit
ECTSCredits
II 42 - - 61 30 35 72 240 3 8Language Turkish
Grade of the Lecture College () Undergraduate ()Graduate
M.Sc. (X) Ph.D. ()Compulsory / Elective ElectivePrerequisities -Course Objectives To teach techniques used in molecular biologyDeveloped ProgrammeAdequaciess of the Lecture CP1, CP2, CP3, CP6, CP7
Learning Outcomes1- To learn the basic methods which used in molecular biology2- To learn the methods of nucleic aside hibridizations3- To learn the methods of electrophoresis and types
Nucleic acid hybridization based methods; in situ hybridizationNonradioactive probesSouthern blotNorthern blotExtraction of proteins, their analysis and purification of proteinsProtein electrophoresis; Fixation with staining;MIDTERM EXAMSFixation on a membrane; western blotTechnical problem shooting in electrophoresis;One-dimensional electrophoresis (native and denaturing PAGE),Two-dimensional electrophoresis, membrane transfer (Western blot)Determination of enzymatic analysis and activities methodsBasic principles of enzymatic analysisFINAL EXAMS
Course Book & References
1. Moleküler Biyolojide Kullanılan Teknikler, Prof. Dr. Güler Temizkan, Doç. Dr. Mazlı Arda, Nobel tıpbookstore, 20042. Molecular Clonning, A LaboratoryManual, J. Sambrook, E. F. Fritsch, T. Maniatis3. Pricnipals of Gene Manupulations, 2001, S. B. Primrose, R. M. Twyman and R. W. Old, sixth edition,Blackwell Science.
Course Code & Title: 0230504 Microbial Biotechnology Name of the Department / Programme: Biology MSB
SemesterSpring
Teaching Methods Credits
Theory Recite Lab. Project/AreaStudy/Homework Quiz Mid
Term Final Total NationalCredit
ECTSCredits
II 42 - - 61 30 35 72 240 3 8Language Turkish
Grade of the Lecture College () Undergraduate ()Graduate
M.Sc. (X) Ph.D. ()Compulsory / Elective ElectivePrerequisities -Course Objectives To provide information about microorganisms used in industrial productions.Developed ProgrammeAdequaciess of the Lecture
CP1, CP2,CP3, CP5, CP7, CP10
Learning Outcomes
1-Will be able to defines the basic principles of biotechnology and biotechnological processes.2-Will be able to identify the importance microorganisms in biotechnology.3-Will be able to explain the technical principles of industrial microbiology and fermentation.4-Will be able to describe the basic processes of microbial biotechnology.5-Will be able to give examples of microbial bio-product.6-Will be able to apply production of microbial biomass, primary and secondary metabolites production.7-Will be able to gain experience in the production of bio-products.8-Will be able to know used for microorganisms for solution of problems.
Identification and classification of microorganismsStarter cultures in microbial biotechnologyMicrobial metabolismProduction of primary and secondary metabolitesProduction of microbial vitaminsProduction of microbial antibiotics and bacteriosinMIDTERM EXAMProduction of microbial polymers, exzopolisaccharides and alginateBiotechnological importance of microalgaeBiotechnological importance of fungiBiotechnological importance of cyanobacteriaBiotechnological importance of lichensProbiotic biotechnology Arceabacteria biotechnologyFINAL EXAM
Course Book & References 1. Beyatlı ve Aslım; Mikrobiyal Biyoteknoloji Ders Notları.2. Demain and Davies; IndustrialMicrobiology and Biotechnology.
Course Code & Title: 0230506- BIOTECHNOLOGY AND BIOSECURITY Name of the Department / Programme: BIOLOGY MSB
SemesterSpring
Teaching Methods Credits
Theory Recite Lab. Project/AreaStudy/Homework Quiz Mid
Term Final Total NationalCredit
ECTSCredits
II 42 - - 61 30 35 72 240 3 8Language Turkish
Grade of the Lecture College () Undergraduate () GraduateM.Sc. (X) Ph.D. ()
Compulsory / Elective ElectivePrerequisities -Course Objectives To examine health, ecological, economic, agricultural, the legal and ethical aspects of biosecurity.
Developed ProgrammeAdequaciess of the Lecture
CP-1CP-2CP-3CP-6CP-8CP-11
Learning Outcomes
1-Gain knowledge about biosafety issues2-Discuss biotechnological applications related to biosafety3-Identify risk groups and biosafety levels4-Gain knowledge about common methods of laboratory waste treatment and waste management plan5-Discuss regulations for Turkish and International standards6-Identify ethical theories and methods relevant to bioethics7-Interpret important ethical questions within a range of areas such as medicine, environment and genetics
Learning Methods andTechniques Expression, Answer-Question,Power Point, Discussion, Solving Problem, Seminar,Homework,Project
Assessment Criteria
(X) mark Percent (%)Midterm Exams X 20
Quizzes X 5Homeworks X 5
Projects X 10Term Paper
Laboratory Work…
Final Exam X 60Week Subjects
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Contents and concepts of bioengineeringBiotechnology and biosecurity and their interactionsThe different approaches in applications of biotechnology in the past, today and futureApplications of modern agricultural biotechnologyTransgenic applicationsGenetically modified organisms and general approaches to products of GDOMİDTERM EXAMDebate generating risks of GDO applications and analyzing different approachesSuggested risk administration system approaches about biosecurity and biodiversityBiological weaponsThe place of GDO and their products in international tradePatent rights and laws in modern biotechnology; Culture collections and their importance about biosecurityThe developments related to the researches about the construction of legal structure in biosecurity oninternational and national platformsFINAL EXAM
Course Book & References 1. Biyogüvenlik ve Biyoteknoloji, 2006,2. Lecture Notes of Prof. Dr. R. Şeminur Topal
Course Code & Title: 0230508- Plant Improvement Techniques Name of the Department / Programme: BIOLOGY MSB
SemesterSpring
Teaching Methods Credits
Theory Recite Lab. Project/AreaStudy/Homework Quiz Mid
Term Final Total NationalCredit
ECTSCredits
II 42 - - 61 30 35 72 240 3 8Language Turkish
Grade of the Lecture College () Undergraduate ()Graduate
Course Objectives Examining as compared of traditional and modern breeding methods principles in plant breeding and theimportance
Developed ProgrammeAdequaciess of the Lecture CP-1, CP-2, CP-5, CP-6, CP-8, CP-11
Learning Outcomes
1- To teach the application of genetic principles in plant breeding.2- To teach the importance of biological diversity in plant breeding and principles of usage.3- To teach the technichs whice use in plant breeding.4- To teach the usage of molecular and biotechnological methods in plant breeding
The basic genetic principals in plant genetic improvementEvolution of cultivated plants and reproductive systems in plant genetic improvement;Basic principles of hereditary mechanisms and hybrid power;incompatibility and sterility in plantsApplication of introduction, selection and hybridization methods in cross-fertilizing plants;Application of introduction, selection and hybridization methods in cross-fertilizing plants;MIDTERM EXAMSApplication of repeated selection methods in cross-fertilizing plants;Mutational improvement techniques, one of the methods applied to plants which reproduce by vegetative andto all plants;Polyploidy improvement techniques, one of the methods applied to all plants;Basic, modern plant improvement principals and important genetic material transferring methods;Basic principles of resistance improvement and mechanism and heredity of resistanceMethods of measuring resistance tests; One of the resistance improvement techniques, selection andhybridization techniques; Resistance improvement techniques, foreign gene transferFINAL EXAMS
Course Book & References
1.Bitki Islahı” Ders Kitabı, 2006., Şehirali, S. ve M. Özgen, A.Ü. Ziraat Fakültesi Yayınları, AnakaraÜniversitesiMatbaası, Ankara.
2. Genel Bitki Islahı, Prof. Dr. İbrahim DEMİR3. Bitki Islahı, Prof. Dr. Sezen ŞEHİRALİ, Yrd. Doç. Dr. Murat ÖZGEN
Course Code & Title: 0230510 Genes Name of the Department / Programme: Department of Biology
SemesterSpring
Teaching Methods Credits
Theory Recite Lab. Project/AreaStudy/Homework Quiz Mid
Term Final Total NationalCredit
ECTSCredits
II 42 - - 61 30 35 72 240 3 8Language Turkish
Grade of the Lecture College () Undergraduate ()Graduate
M.Sc. (X) Ph.D. ()Compulsory / Elective ElectivePrerequisities -Course Objectives To learn about hemimetabol insects.Developed ProgrammeAdequaciess of the Lecture CP-2, CP-6, CP-7,CP-11
Learning Outcomes 1-To learn the characteristics and classification of Hemimetabol insects2-To learn the distributed, morphology and biology of Hemimetabol insects
Hemimetabol developing insects’ ordo and classificationGeneral characteristics, morphology, distribution, biology and classification of EphemeropteraGeneral characteristics, morphology, distribution, biology and classification of OdonataGeneral characteristics, morphology, distribution of Plecoptera, EmbiopteraGeneral characteristics, morphology, distribution of Dermaptera, Notoptera
General characteristics, morphology, distribution, biology and classification of MantodeaMIDTERM EXAMGeneral characteristics, morphology, distribution, biology and classification of BlattodeaGeneral characteristics, morphology, distribution, biology and classification of BlattodeaGeneral characteristics, morphology, distribution of Phasmatodea, Isoptera. ,General characteristics, morphology, distribution of Zoraptera, PscopteraGeneral characteristics, morphology, distribution of PhthirapteraGeneral characteristics, morphology, distribution of Thysanoptera, General characteristics, morphology,distribution of HeteropteraFINAL EXAM
Course Book & References
1. Genes VII, 2000, Benjamin Lewin, Oxford University Pres2. Moleküler biyoloji, 2007, Ahmet Yıldırım, Fevzi Bardakçı, Mehmet Karataş, Bahattin Tanyolaç,Nobel Yayın Dağıtım, Ankara3. An Introduction to Genetic Analsis, 2000, Anthony J. F. Griffiths, Jeffrey H. Miller, David T.Suzuki, Richard C. Lewontin, William M. Gelbart, W. H. Freeman and Company, NY. USA4. Lecture notes
Course Code & Title: 0230512 Molecular Biology of The Genes Name of the Department / Programme: Department of Biology
SemesterSpring
Teaching Methods Credits
Theory Recite Lab. Project/AreaStudy/Homework Quiz Mid
Term Final Total NationalCredit
ECTSCredits
II 42 - - 61 30 35 72 240 3 8Language Turkish
Grade of the Lecture College () Undergraduate ()Graduate
M.Sc. (X) Ph.D. ()Compulsory / Elective ElectivePrerequisities -Course Objectives Review of the structure and organization of genes at the molecular levelDeveloped ProgrammeAdequaciess of the Lecture CP-1, CP-2, CP-3
Learning Outcomes
1- Understanding of nucleic acids convey genetic information2- Learning the structure and function of nucleic acids3- Understanding of the relationship between genetic codes and protein synthesis4- Learning of the principals of the gene regulation at different living organisms level
The Mendelian view of the worldNucleic acids convey genetic informationThe structure of DNA and RNAChromosome, chromatin and the nucleosomeThe replication of DNAThe mutability and repair of DNAMIDTERM EXAMMechanism of transcriptionRNA splicing and TranslationGenetic codesGene gerulation in prokaryotesGene regulation in eukaryotesGene regulation during developmentFINAL EXAMS
Course Book & References
1. Molecular Biology Of The Cell,1994, Bruce Alberts, Dennis Bray, Julian Lewis, Martin Raff, Keith Roberts,James D. Watson, Garland Publishing, NY. USA2. Moleküler Hücre Biyolojisi, 2006, Prof. Dr. Hasan Veys, Güneş, Kaan Kitabevi, Eskişehir3. Molecular Biology of The Gene, 2004,James D. Watson, Tania A. Baker, Stephen P. Bell,Alexander Gann, Michael Levine and Richard Losick, Pearson Benjamin Cummings-CSHL PRESS, USA4. Genes VII, 2000, Benjamin Lewin, Oxford University Pres5. Moleküler biyoloji, 2007, Ahmet Yıldırım, Fevzi Bardakçı, Mehmet Karataş, Bahattin Tanyolaç, Nobel YayınDağıtım, Ankara6. An Introduction to Genetic Analsis, 2000, Anthony J. F. Griffiths, Jeffrey H. Miller, David T. Suzuki, Richard C.Lewontin, William M. Gelbart, W. H. Freeman and Company, NY. USA
Course Code & Title: 0230514 DNA Probes Name of the Department / Programme: Biology departmant
SemesterSpring
Teaching Methods Credits
Theory Recite Lab. Project/AreaStudy/Homework Quiz Mid
Term Final Total NationalCredit
ECTSCredits
II 42 - - 61 30 35 72 240 3 8Language Turkish
Grade of the Lecture College () Undergraduate ()Graduate
M.Sc. (X) Ph.D. ()Compulsory / Elective ElectivePrerequisities -Course Objectives Derivation of probes which used in DNA analysis in molecular biologyDeveloped ProgrammeAdequaciess of the Lecture CP1, CP2, CP8
Learning Outcomes1- To teach the usage of nucleic asides in genome marking2- To teach the different marking methods3- To teach the intended use of genome marking.
Learning Methods andTechniques Expression, Answer-Question,Power Point, Discussion, Solving Problem, Seminar,Homework,Project
Assessment Criteria
(X) mark Percent (%)Midterm Exams X 20
Quizzes X 5Homeworks X 5
Projects X 10Term Paper
Laboratory Work…
Final Exam X 60Week Subjects
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General introduction to DNA probesDNA probes designUsage of DNA probesDNA probes typesMolecular hybridization technologySample preparationMIDTERM EXAMSRadioactive labeling proceduresSouthern, Nouthern and Western Blotting MethodsPurification of radiolabeled probesNon-radiolabelling proceduresHybridization formats and detection proceduresProbe and target amplification systemsFINAL EXAMS
Course Book & References 1. DNA probes, 19889, George H. Keller, Mark M. Manak, Macmillian Publishers Ltd, NY. USA
Course Code & Title: 0230516 Advenced Molecular Genetics Name of the Department / Programme: Biology MSB
SemesterSpring
Teaching Methods Credits
Theory Recite Lab. Project/AreaStudy/Homework Quiz Mid
Term Final Total NationalCredit
ECTSCredits
II 42 - - 61 30 35 72 240 3 8Language Turkish
Grade of the Lecture College () Undergraduate ()Graduate
M.Sc. (X) Ph.D. ()Compulsory / Elective ElectivePrerequisities -Course Objectives To learn the structure, properties and metabolism of genetic materialDeveloped ProgrammeAdequaciess of the Lecture
CP-1, CP-2, CP-3, CP-7
Learning Outcomes
1- DNA as the genetic material, DNA sequences, and learn about the properties of nucleic acids2- To understand the organization of prokaryotic and eukaryotic genome3- Learning the basic principles of molecular genetics4- To know the application of molecular genetics
Nukleic acids;Massbase content and base sequencesThe form and organization of genetic materialNucleic acid metabolism enzymesReplicationMIDTERM EXAMSRepairFrom gene to proteinBiochemical base of photype and genotype relationshipRegulation of gene expressionExtra chromosomal genetic elementsRecombination; MutationFINAL EXAMS
Course Book & References
1. Prof. Dr. Güler Temizkan, Genetik, II. Moleküler Genetik, i.ü. Fen Fakültesi Basımevi, İstanbul, 19992. Genetik. W. S. Klug and M.R. Cummings, Ed. Cihan Öner. Palme Yayıncılık, 2003.3. HumanMolecular Genetics 2. T. Strachan, A.P. Read. Willey and Sons Publication, 2000.4. Molecular biology of the gene. J.D.Watson, T.A. Baker, S.P. Bell, A. Gann, M. Levine, R. Losick. CSHL Press,2004.
Course Code & Title: 0230518- The Techniques Used In Biotechnology Name of the Department / Programme: BIOLOGY MSB
SemesterSpring
Teaching Methods Credits
Theory Recite Lab. Project/AreaStudy/Homework Quiz Mid
Term Final Total NationalCredit
ECTSCredits
II 42 - - 61 30 35 72 240 3 8Language Turkish
Grade of the Lecture College () Undergraduate ()Graduate
M.Sc. (X) Ph.D. ()Compulsory / Elective ElectivePrerequisities -Course Objectives To teach current techniques used in biotechnology.Developed ProgrammeAdequaciess of the Lecture CP-1, CP-3, CP-6
Learning Outcomes1- Understand the importance of bio-security in biotechnological studies2- To teach the application of Molecular techniques in the biotechnology fields3- To teach the processes which used to produce of biosystems products
Learning Methods andTechniques Expression, Answer-Question,Power Point, Discussion, Solving Problem, Seminar,Homework,Project
Assessment Criteria
(X) mark Percent (%)Midterm Exams X 20
Quizzes X 5Homeworks X 5
Projects X 10Term Paper
Laboratory Work…
Final Exam X 60Week Subjects
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Biosecurity and biotechnologyCell and enzyme mobilizationChromosomal DNA extractionPlasmid DNA extractionRNA extractionElectrophoresis techniquesMIDTERM EXAMSPurification and characterization of proteinsGenetic control of biosynthesis of secondary metabolitesGenetics of bacteriosin and biotechnological applications of lactic acid bacteriaPCR techniquesRT-PCR;Uses of computer and internet in genetic analysisFINAL EXAMS
Course Book & References 1. Manual of IndustrialMicrobiology and Biotecnology. Arnold L Demain and Julian E. Davies2. Maniatis, Sambrook, Russel, Moleculer Cloning, I, II ve III
Course Code & Title: 0230520 Entomological Museum Methods- Name of the Department / Programme: Department of Biology
SemesterSpring
Teaching Methods Credits
Theory Recite Lab. Project/AreaStudy/Homework Quiz Mid
Term Final Total NationalCredit
ECTSCredits
II 42 - - 61 30 35 72 240 3 8Language Turkish
Grade of the Lecture College () Undergraduate ()Graduate
Course Objectives introducing all instruments for create standard museum materials in insect researches, to gain for method,knowledge, skills
Developed ProgrammeAdequaciess of the Lecture CP-6, CP-7, CP-11
Learning Outcomes
1-Collect specimens from the terrestrial, aquatic and parasitic insects.2-Explain insect killing operations and killing jars.3-Explain traps and the capture of insects by attracting them.4-Transfer insects from various environments to the laboratory.5-Record information on the samples collected in the field.6-Explain the conservation and preparation operation of the samples collected.7-Explain the placement of collections and preservation of insect specimens.8-Explain the repair of the broken bodies of insect specimens.
Collection of terrestrial insectsKilling, killing bottlesKilling and preservation solutionsKilling by injectionTransport of live insectsCollection equipment, collection of aquatic insectsMIDTERM EXAMCollection of mosquitoes and parasitic insectsCatch insects with attracting and light trapsCollect dead insects, the trap pits, manure trapsCatch with female charm and help of moving trapsPreservation and storage of captured insectsPinnig in the field, Preservation and storage mediaFINAL EXAM
Course Book & References
1. Kıyak, S., Entomolojik Müze Metodları, Ankara, 2000.2. Ed. Millar, I., M., Uys, V.,M., Urban, R., P., Colecting and preserving insects and arachnids,Switzerland, 2000.3. Demirsoy, A., Yaşamın temel kuralları, Omurgasızlar/Böcekler, Entomoloji, Cilt 2-kısım 2, Ankara, 1990.4. Borror, J., D., Tiplehorn, C., A., Johnson, N., F., An introduction to the study of insects, Newyork, 1992.
Course Code & Title: 0230522 Insect Ecology Name of the Department / Programme: Biology departmant
SemesterSpring
Teaching Methods Credits
Theory Recite Lab. Project/AreaStudy/Homework Quiz Mid
Term Final Total NationalCredit
ECTSCredits
II 42 - - 61 30 35 72 240 3 8Language Turkish
Grade of the Lecture College () Undergraduate ()Graduate
M.Sc. (X) Ph.D. ()Compulsory / Elective ElectivePrerequisities -Course Objectives Elections and examination of the ecological relationships of insects living thingsDeveloped ProgrammeAdequaciess of the Lecture
CP3, CP6, CP8
Learning Outcomes
1-Understanding the impact of climate factors to development of insects2-Understanding the impact of food factors to development of insects3-Understanding the impact of population factors to development of insects4-Understanding the impact of interactions of living beings to development of insects
Learning Methods andTechniques Expression, Answer-Question,Power Point, Discussion, Solving Problem, Seminar,Homework,Project
Assessment Criteria
(X) mark Percent (%)Midterm Exams X 20
Quizzes X 5Homeworks X 5
Projects X 10Term Paper
Laboratory Work…
Final Exam X 60Week Subjects
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Life forms of insects, living environmentsHomotipic relationship of insectsInsects tend to social lifeHeterotipic relationship of insectsAnimals which enemys of insectsInsects which have illnessMİDTERM EXAMSPlant-Animal relationship, protection choice against hostile influencesPhylactic mimic, non-obvious phylakti, sematophylactic obvious mimicRelationships with inanimate environmentReproduction ability and death ratesAbiotic factors and effectsBiosonoz and abiotic factors, Insect-human relationshipFINAL EXAM
Course Book & References
1. Odum, E., P., Barrett, G., W., Basic principles of EchologyAnkara 2008.2. Demirsoy, A., Basic rules of life, Invertebrata / Insects, Entomology, Volume 2-Part 2,Ankara, 1990.3. Şişli, N., Echology-Enviroment Science, Ankara, 1996.
Course Code & Title: 0230524 Hemimetabol Insects Name of the Department / Programme: Department of Biology
SemesterSpring
Teaching Methods Credits
Theory Recite Lab. Project/AreaStudy/Homework Quiz Mid
Term Final Total NationalCredit
ECTSCredits
II 42 - - 61 30 35 72 240 3 8Language Turkish
Grade of the Lecture College () Undergraduate ()Graduate
M.Sc. (X) Ph.D. ()Compulsory / Elective ElectivePrerequisities -Course Objectives To learn about hemimetabol insects.Developed ProgrammeAdequaciess of the Lecture CP-2, CP-6, CP-7, CP-11
Learning Outcomes 1-To learn the characteristics and classification of Hemimetabol insects2-To learn the distributed, morphology and biology of Hemimetabol insects
Hemimetabol developing insects’ ordo and classificationGeneral characteristics, morphology, distribution, biology and classification of EphemeropteraGeneral characteristics, morphology, distribution, biology and classification of OdonataGeneral characteristics, morphology, distribution of Plecoptera, EmbiopteraGeneral characteristics, morphology, distribution of Dermaptera, Notoptera
General characteristics, morphology, distribution, biology and classification of MantodeaMIDTERM EXAMGeneral characteristics, morphology, distribution, biology and classification of BlattodeaGeneral characteristics, morphology, distribution of Phasmatodea, Isoptera. ,General characteristics, morphology, distribution of Zoraptera, Pscoptera
General characteristics, morphology, distribution of PhthirapteraGeneral characteristics, morphology, distribution of Thysanoptera, General characteristics, morphology,distribution of HeteropteraFINAL EXAM
Course Book & References 1. Demirsoy, A., Yaşamın temel kuralları, Omurgasızlar/Böcekler, Entomoloji, Cilt 2- kısım 2, Ankara, 1990.2. Resh, V., Carde, R., Encyclopedia of insects, 2003.
Course Code & Title: 0230526 Systematics of Odonata Name of the Department / Programme: Biology MSB
SemesterAutumn
Teaching Methods Credits
Theory Recite Lab. Project/AreaStudy/Homework Quiz Mid
Term Final Total NationalCredit
ECTSCredits
I 42 - - 61 30 35 72 240 3 8Language Turkish
Grade of the Lecture College () Undergraduate ()Graduate
M.Sc. (X) Ph.D. ()Compulsory / Elective ElectivePrerequisities -Course Objectives Identification of species of Odonata team, to have information about the diagnosis and systematic.Developed ProgrammeAdequaciess of the Lecture CP1, CP2, CP7, CP11, CP12
Learning Outcomes
1-To learn the general characteristics of the species belonging to the Ordo: Odonata.2-To learn morphology and biology of the species belonging to the Ordo: Odonata.3-Have information about systematics and identification of Odonata4-To learn species belonging to the Ordo: Odonata in Turkey.
General features of Odonata-IGeneral features of Odonata-IIMorphology of OdonataBiology of OdonataThe general characteristics of the families in the Palearctic regionMorphology of the families in the Palearctic regionMIDTERM EXAMBiology of the families in the Palearctic regionThe general characteristics of the families in TurkeyMorphology of the families in TurkeyBiology of the families in TurkeyIdentification keys for familyImportant genus of OdonataFINAL EXAM
Course Book & References1. Demirsoy, A., Yaşamın temel kuralları, Omurgasızlar/Böcekler, Entomoloji, Cilt 2-kısım 2,Ankara, 1990.2. Resh, V., Carde, R., Encyclopedia of insects, 2003.
Course Code & Title: 0230528 Ecology of Wetland Name of the Department / Programme: Biology MSB
SemesterAutumn
Teaching Methods Credits
Theory Recite Lab. Project/AreaStudy/Homework Quiz Mid
Term Final Total NationalCredit
ECTSCredits
I 42 - - 61 30 35 72 240 3 8Language Turkish
Grade of the Lecture College () Undergraduate ()Graduate
M.Sc. (X) Ph.D. ()Compulsory / Elective ElectivePrerequisities -Course Objectives To knowledge about the life and ecology of wetlands.Developed ProgrammeAdequaciess of the Lecture CP-1, CP-6
Learning Outcomes
1-to know the properties of wetlands.2-to know the role of wetlands ecosystem.3-to know the biological properties and the types of wetlands.4-to comment of Turkey's wetlands.5-to know protection of wetlands and strategies for these areas and the laws
Definition and general characteristics of wetlands IGeneral characteristics of wetlands IICompenents of wetland ecosystemsAbiotic components of wetlandBiotic components of wetlandLake ecosystemMIDTERM EXAMMarsh ecosystemStream ecosystemComponents of river pollutionComponents of lake pollutiondeclarations and agreements of wetlandsımportant wetlands in the world, projections about the history and future of wetlands in our countryFINAL EXAM
Course Book & References
1. Kazancı, N., et al. A Hydrobiological research on Köyceğiz-Dalyan Specially Protected AreaÖzyurtPress,165pp, 32 figs., Ankara. (1992).
2. Girgin, S. and N. Kazancı Researches on inland waters of Turkey I. Evaluation of water quality ofAnkara Stream using physico-chemical and biological parameters.- Özyurt Printinghouse,184pp.Ankara. (1994).
3. Kazancı, N., et al. Biological Diversity Action Plan: Wetlands, River, Marine, Lake, Island andCave Ecosystems. World Bank Report. İmaj Print, 177 pp., Ankara. (1995).
4. Kazancı, N. et al. Inland Waters of Turkey Series II (ed. N. Kazancı): Biotic index methods forevaluating environmental quality of runningwaters. Imaj Press pp.100. (1997).
5. Kazancı, N., et al. Inland Waters of Turkey Series III (ed. N. Kazancı):Limnology, Environmentalquality and biodiversity of Burdur and Acı Lakes Imaj Press. 120 pp. Ankara. (1998).
6. Kazancı, N., et al. Inland waters of Turkey Series IV (ed. N. Kazancı):Limnology, Environmentalquality and biodiversity of Köyceğiz, Beyşehir, Eğirdir, Akşehir, Eber, Çorak, Kovada, Yarışlı,Bafa, Salda, Karataş, Çavuşçu Lakes,Delta of Küçük and Büyük Menderes, Güllük and KaramukMarshes.Imaj Press. 372 pp. Ankara. (1999).
Course Code & Title: 0230530-THE BASIC RULES IN THE RESEARCH ANDSCIENTIFIC PUBLICATIONS Name of the Department / Programme: BIOLOGY MSB
SemesterSpring
Teaching Methods Credits
Theory Recite Lab. Project/AreaStudy/Homework Quiz Mid
Term Final Total NationalCredit
ECTSCredits
II 42 - - 61 30 35 72 240 3 8Language Turkish
Grade of the Lecture College () Undergraduate ()Graduate
To show the students engaged in scientific researchs the way followed in scientific studies. To help preparearticles according to the rules regularly
Developed ProgrammeAdequaciess of the Lecture CP-1, CP-3, CP-5, CP-8, CP-9, CP-10, CP-12
Learning Outcomes
1-To have information about research types and research problems2-Makes analysis of a scientific field.3-Understand the basic principles of experimental studies.4-Examines the structure of the scientific publication publishing research results.5-Knowledge about the study of literature.6-Discuss ways to gather information related to the research.7-Apply the basic principles in the preparation of a scientific publication.8-To learn preparing article on computer with using correct programs
General definitions about subject, types of publications in the field of biologyHow can you access sources and how can you obtain itTypes of sources and examples about themConsidered factors of thesis preparationMaster theses are examined and are discussed by the studentsWhat is scientific writing?MIDTERM EXAMHow can prepare title ? How can be ordered authors and addresses? How can write introduction?How to Prepare a short summary? How is written Materials and Methods section?How to write Results? How to Write discussion? How is expressed thanks?How are attributed to sources? How can be designed a effective table?Where and how the written text is presented? Assessment Process (how can comminate with editors?)Publishing Process, Scientific articles are examined and are discussed by the studentsFINAL EXAM
Course Book & References 1. Several articles published in Turkish and English.
Course Code & Title: 0230532 Comparative Vertebrate Endocrinology Name of the Department / Programme: Biology MSB
SemesterSpring
Teaching Methods Credits
Theory Recite Lab. Project/AreaStudy/Homework Quiz Mid
Term Final Total NationalCredit
ECTSCredits
I 42 - - 61 30 35 72 240 3 8Language Turkish
Grade of the Lecture College () Undergraduate () GraduateM.Sc. (X) Ph.D. ()
Compulsory / Elective ElectivePrerequisities -
Course Objectives Teaching endocrine systems of vertebrates and histology of these systems to students want to study histology,cytology, endocrinology and physiology of vertebrates.
Developed ProgrammeAdequaciess of the Lecture
CP-3, CP-11
Learning Outcomes1-To obtain information about the physiology and biochemistry of the endocrine system2-To Learn the similarities and differences in living vertebrate endocrine system3-To learn Cytology and histology of the endocrine system of vertebrates
The Classification of the hormonesThe secretion of the hormonesthe Chemical Structures of the HormonesHormones CategorizationHypothalamusHypophyseMIDTERM EXAMThroide GlandPharathroide GlandAdrenal glandAdrenal glandPancreasSexual Glands.FINAL EXAM
Course Book & References
1. McEwen,B.S.,1976, Interaction between hormones and nevre tissue.Sci.Am.235p.2. Noyan, A.,1993, Yaşamda ve hekimlikte fizyoloji 1160p.3. River, C., and Vale,W., 1983, Endocrinology 113p.
Course Code & Title: 0230534 Microbial Count Techniques Name of the Department / Programme: Biology MSB
SemesterSpring
Teaching Methods Credits
Theory Recite Lab. Project/AreaStudy/Homework Quiz Mid
Term Final Total NationalCredit
ECTSCredits
II 42 - - 61 30 35 72 240 3 8Language Turkish
Grade of the Lecture College () Undergraduate ()Graduate
Course Objectives Classification of counting methods of microorganisms. Direct and indirect counting methods. Cultureconstitution methods. Interpretation of counting datas.
Developed ProgrammeAdequaciess of the Lecture CP1, CP3, CP7
Learning Outcomes
1-Will be able to define the methods of enumeration in microbiology.2-Will be able to explain the technical principles of microbiology.3-Will be able to describe the basic processes of microbial enumeration.4-Will be able to gain experience in the enumeration methods.
Cultural counting methods, methods used in solid mediaDilution, seeding and incubation mediumColony counting and evaluationBulk cultural counting methodCounting method on the surface of culturalTube dilution methodMIDTERM EXAMMost Probable Number MethodDual-layer cultivation methodSports countAnaerobic bacteria countMicroscopic count methodsMcFarland counting method, Metabolism-based countsFINAL EXAM
Course Book & References
1. Gürgün, V. ve Halkman A.K. Mikrobiyolojide Sayım Yöntemleri. GıdaTeknolojisi Derneği Yayın:7.
2. Çotuk A. GenelMikrobiyoloji Laboratuar Yöntemleri. Nobel tıp kitapevi.
Course Code & Title: 0230536 Isolation and Identification Tecniques ofMicrofungi Name of the Department / Programme: Biology MSB
SemesterSpring
Teaching Methods Credits
Theory Recite Lab. Project/AreaStudy/Homework Quiz Mid
Term Final Total NationalCredit
ECTSCredits
II 42 - - 61 30 35 72 240 3 8Language Turkish
Grade of the Lecture College () Undergraduate ()Graduate
Course Objectives To inform students about what types of reserovur are there, how these are isolated from main sources, whichcriterias are useful for diagnosis, comprehending and understanding of diagnostic procedure steps.
Developed ProgrammeAdequaciess of the Lecture
CP1,CP3, CP11
Learning Outcomes1-To learn methods for the isolation of microorganisms2- To learn techniques for the identification of microorganisms3-To learn makroskobik and microscopic diagnostic criteria
Introduction to microfungiSpeciallty of microfungiWorking methods in the fieldFungi collection methodsObservation of micro-detailsWhat is a reservoir for microorganismsMİDTERM EXAMThe types of revervoir of microfungiIsolation methodsIsolation processesCounting resultsIdentification techniquesMushrooms and microoscopic identification ariteria, Anal suitable storage conditions of isolated fungiFINAL EXAM
Course Book & References
1. Biology of Microorganisms, Brock, T. D. et. Al., Prentice-Hall International Inc., New Jersey, 2006.
2. Essential microbiology, Hogg, S., John Wiley and Sons, New Jersey, 2005.
3. Toprak Mikrofungusları 7 Cilt. Hasenekoğlu İ., Erzurum, 1991
4. Compendium of Soil Fungi, Domsch, K.H., W. Gams, and T.H. Anderson
Course Code & Title: 0230538 Identification Techniques in Bacteria Name of the Department / Programme: BIOLOGY MSB
SemesterSpring
Teaching Methods Credits
Theory Recite Lab. Project/AreaStudy/Homework Quiz Mid
Term Final Total NationalCredit
ECTSCredits
II 42 - - 61 30 35 72 240 3 8Language Turkish
Grade of the Lecture College () Undergraduate ()Graduate
M.Sc. (X) Ph.D. ()Compulsory / Elective ElectivePrerequisities -Course Objectives To teach the paths in isolation and identification of the bacteria.Developed ProgrammeAdequaciess of the Lecture
C-P1, CP-3, CP-9
Learning Outcomes1-To understand collection and transport of microbiological samples2-To learn macroscopic and microscopic examination methods3-To learn culture and serological tests
Collection methods examined materialsMethods used in the samples pre-culture;Examination of the morphological characteristics of bacteriaGeneral and private media are used for isolation of bacteriaExamination of bacterial colonies in mixed culturesMedias used for isolation of Gr (+) bacteriaMİDTERM EXAM
Biochemical tests are used for isolation of Gr (+) bacteria,Medias used for isolation of Gr (-) bacteriaBiochemical tests are used for isolation of Gr (-) bacteriaPreparation of media for identification of bacteria in the laboratory;Interpretation of biochemical tests for identification of bacteriaMolecular methods for identification of bacteria, Antigenic and serological methods.FINAL EXAM
Course Book & References 1. Color Atlas and Textbook of Diagnostic Microbiology,J.B.Lippincott Company,Koneman, E.W.,Allen,S.D.,Janda,W.M.,Schreckenberger,P.C.Winn,J.,Wc.
Course Code & Title: 0230540 Insect Physiology-II Name of the Department / Programme: Biology departmant
SemesterSpring
Teaching Methods Credits
Theory Recite Lab. Project/AreaStudy/Homework Quiz Mid
Term Final Total NationalCredit
ECTSCredits
II 42 - - 61 30 35 72 240 3 8Language Turkish
Grade of the Lecture College () Undergraduate ()Graduate
M.Sc. (X) Ph.D. ()Compulsory / Elective ElectivePrerequisities -Course Objectives Teaching of some of the physiological events related to Insect PhysiologyDeveloped ProgrammeAdequaciess of the Lecture
CP1, CP3, CP6
Learning Outcomes1-Comprehending physiology of systems in insects2-Learning nutritional requires of insects3-Learning about Insect egg, external and internal insect physiology
Learning Methods andTechniques Expression, Answer-Question,Power Point, Discussion, Solving Problem, Seminar,Homework,Project
Assessment Criteria
(X) mark Percent (%)Midterm Exams X 20
Quizzes X 5Homeworks X 5
Projects X 10Term Paper
Laboratory Work…
Final Exam X 60Week Subjects
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1011121314
Insect embryologyAdult periods of insectsInsects which in adult periods of physiological eventsCirculatory system of insects,Digestive system of insectsExcretory system of insects,MIDTERM EXAMSRespiratory system of insects,Nutritional types and metabolism,Insects neuroanatomyInsects neurophysiologySense organs of insectsReproductive system of insects, PheromonesFINAL EXAM
Course Book & References
1. Blum, M.S., 1985. Fundamentals of Insect Physiology. A Wiley- Interscience Publication, 5982. Chapman, R.F., 1972. The Insects. Structure and Function. The English Universities Press Ltd.St. Paul’sHouse,Warwick Lane, London. p.38-83.3. Chapman, R.F., 1985. Structure of the Digestive System. Kerkut, A.G. and L.I. Gilbert (Ed.),ComprehensiveInsect4. Physiology, Biochemistry and Pharmacology. Regulation: Digestion, Nutrition and Excretion,Volume I- XII:5. Nation, J.L., 2002. Insect Physiology and Biochemistry. CRC Press LLC.485.6. Roeder, D.K., 1953. Insect Physiology. Chapman & Hall, 2-6 Boundary Row, London. 1100.
Course Code & Title: 0230542 Advanced Mycology-II Name of the Department / Programme: Department of Biology
SemesterSpring
Teaching Methods Credits
Theory Recite Lab. Project/AreaStudy/Homework Quiz Mid
Term Final Total NationalCredit
ECTSCredits
II 42 - - 61 30 35 72 240 3 8Language Turkish
Grade of the Lecture College () Undergraduate ()Graduate
Course ObjectivesThe importance of fungi in terms of people, mycological history, the reproduction of fungi, physiology,nutrition and ecological characteristics, fungal systematics, information about parasitic and symbioticrelationships.
Developed ProgrammeAdequaciess of the Lecture
CP-6, CP-7, CP-11
Learning Outcomes
1- 1-To learn fungi which have differentiating characteristics from bacteria viruses and parasites2- 2-To have information about mushroom production3- 3-Can be done diagnostic distinction between forms of spore
4-To distinguish between poisonous and non-poisonous mushrooms.Learning Methods andTechniques Lecture, Question-Answer, Discussion, Presentation, Problem Solving, Simulation, Seminar, Homework, Project
Assessment Criteria
(X) mark Percent (%)Midterm Exams X 20
Quizzes X 5Homeworks X 5
Projects X 10Term Paper
Laboratory Work…
Final Exam X 60
Week Subjects
123456789
1011121314
History of MycologyFeatures and classification of fungiGymnomycota general characteristicsGeneral features of MastigomycotaGeneral features of AmomtigomycotaAscomycetes general features and life cycleMIDTERM EXAMAsidiomycetes general features and life cycleMorphological, physiological and ecological characteristics of macro fungiMacro fungi reproductionNutrient and economic value of macro fungiExported macro-fungiUse of fungi, Recognition and avoidance of poisonous fungiFINAL EXAM
Course Book & References1- Gücin, F. ve Tamer, A.Ü., 1994, Mikolojiye Giriş, Uludağ Üniversitesi Fen-Edebiyat Fakültesi Ders NotlarıNo:1, 198 s.2- Öner, M. , 1980, Mikoloji II, E. Ü. Fen Fak. Kitaplar Serisi No:39, E. Ü. Fen Fak. Baskı İşleri, İzmir.
Course Code & Title: 0230544 Micropreparation Teqhniques Name of the Department / Programme: Biology MSB
SemesterSpring
Teaching Methods Credits
Theory Recite Lab. Project/AreaStudy/Homework Quiz Mid
Term Final Total NationalCredit
ECTSCredits
I 42 - - 61 30 35 72 240 3 8Language Turkish
Grade of the Lecture College () Undergraduate ()Graduate
M.Sc. (X) Ph.D. ()Compulsory / Elective ElectivePrerequisities -Course Objectives To gain information about the preparation of animal tissues.Developed ProgrammeAdequaciess of the Lecture
CP1, CP3, CP7, CP8
Learning Outcomes
1-Choosing suitable materials in examining biologic materials under microscope2-Getting knowledge about different kinds of microscope3-Choosing and setting suitable microscope4-Learning different techniques of microperation5-Obtaining experiences about microphotography and applications6-Examinig preparates, saving measure and records
Preparation methodsFixing solutionsFixationWashing of the tissueDehydration of tissueTransparencingMIDTERM EXAMParaffin embeddingMicrotomeSectioningStaining of sectionsCytochemical staining methodsHistochemical staining methodsFINAL EXAM
Course Book & References Ozban, N., Özden, Ö. Mikropreparasyon Yöntemleri. İstanbul. 1991.
Course Code & Title: 0230546 Advanced Animal Physiology Name of the Department / Programme: Department of Biology
SemesterSpring
Teaching Methods Credits
Theory Recite Lab. Project/AreaStudy/Homework Quiz Mid
Term Final Total NationalCredit
ECTSCredits
42 - - 61 30 35 72 240 3 8Language Turkish
Grade of the Lecture College () Undergraduate ()Graduate
M.Sc. (X) Ph.D. ()Compulsory / Elective ElectivePrerequisities -Course Objectives To provide information on topics related to animal physiology.Developed ProgrammeAdequaciess of the Lecture CP-2, CP-7, CP-12
Learning Outcomes1-To understand the importance of physiology.2-To have more detailed information about the physiology of animals and be able to use this information infuture studies.
Nervous systemPhysiology of vision and TastingPhysiology of touch and hearingReceptor PhysiologyCirculatory systemPhysiology Systematic and Pulmanory Circulatory SystemMIDTERM EXAMLymph circulationDigestive systemChemical basis of digestionRegulation of the secretion and secretion of digestive fluidsAbsorption physiologyEnergy metabolismFINAL EXAM
Course Book & References 1. Ganong, WF, 1998. Medical Physiology2. Guyton, AC., Hall JE.1997. The text book of Medical Physiology W. B Saunders Company
Course Code & Title: 0230548 Free Radicals and Antioxidant DefenseSystems Name of the Department / Programme: Biology Department
SemesterAutumn
Teaching Methods Credits
Theory Recite Lab. Project/AreaStudy/Homework Quiz Mid
Term Final Total NationalCredit
ECTSCredits
II 42 - - 61 30 35 72 240 3 8Language Turkish
Grade of the Lecture College () Undergraduate ()Graduate
M.Sc. (X) Ph.D. ()Compulsory / Elective ElectivePrerequisities -Course Objectives To provide information free radicals and antioxidant defense system in biology.Developed ProgrammeAdequaciess of the Lecture
CP1, CP3, CP6, CP8
Learning OutcomesDescription is made of free radicals.Source of free radicals and its effects explain on biological systems.To given information about the eliminate mechanisms of free radicals harmful effects.
Free radicalsFree oxygen radicals and reactive oxygen speciesFree radicals sourcesTtrans element and free radicals formationEffects of free radicalsMIDTERM EXAMAntioxidant defense systemNatural antioxidanxsExogen antioxidantsFood antioxidantsLipid peroxidationRelation with free radicals of various diseaseAntioxidants foodFINAL EXAM
Course Book & References
1. Free Radicals in Biology and Medicine, Barry Halliwell & John M.C. Gutteridge.2. Free Radicals, Oxidative Stress, and Antioxidants, Tomris Özben.3. Oxidative Stress Biomarkers and Antioxidant Protocols.4. Course Notes
