Front MatterSource: Proceedings of the National Academy of Sciences of the United States of America,Vol. 94, No. 13 (Jun. 24, 1997), pp. i-viiPublished by: National Academy of SciencesStable URL: http://www.jstor.org/stable/42193 .
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PROCEEDINGS OF THE
NATIONAL ACADEMY OF SCIENCES
OF THE UNITED STATES OF AMERICA
June 24, 1997 Volume 94 / Number 13
INCLUDES: FROM THE ACADEMY FEATURING FRONTIERS OF SCIENCE
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PROCEEDINGS OF THE
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PROCEEDINGS OF THE
NATIONAL ACADEMY OF S CIENCE
OF THE UNITED STATES OF AMERICA
June 24, 1997 Volume 94, Number 13 pp. 6579-7120
Table of Contents
From the Academy
The age of the universe 6579-6584 David N. Spergel, Michael Bolte, and Wendy Freedman
Mathematical approaches to comparative linguistics 6585-6590 Tandy Warnow
Physical Sciences
CHEMISTRY
Nonenzymatic and enzymatic hydrolysis of alkyl 6591-6595 halides: A theoretical study of the SN2 reactions of acetate and hydroxide ions with alkyl chlorides
Andreas H. Maulitz, Felice C. Lightstone, Ya-Jun Zheng, and Thomas C. Bruice
ENGINEERING
Reported emissions of organic gases are not 6596-6599 consistent with observations
Ronald C. Henry, Clifford H. Spiegelman, John F. Collins, and EunSug Park
GEOLOGY
Isotopes, ice ages, and terminal Proterozoic 6600-6605 earth history
Alan J. Kaufman, Andrew H. Knoll, and Guy M. Narbonne
STATISTICS
Sample size determination in combinatorial chemistry 7120 (Correction)
Peng-Liang Zhao, Robert Zambias, James A. Bolognese, David Boulton, and Kevin Chapman
Biological Sciences
APPLIED BIOLOGICAL SCIENCES
Peptidyl-transferase inhibitors have antiviral 6606-6611 properties by altering programmed -1 ribosomal frameshifting efficiencies: Development of model systems
Jonathan D. Dinman, Maria J. Ruiz-Echevarria, Kevin Czaplinski, and Stuart W. Peltz
The heat shock-induced hyperphosphorylation of T is 6612-6617 estrogen-independent and prevented by androgens: Implications for Alzheimer disease
Sozos Ch. Papasozomenos
BIOCHEMISTRY
Prion-inducing domain 2-114 of yeast Sup35 protein 6618-6622 transforms in vitro into amyloid-like filaments
Chih-Yen King, Peter Tittmann, Heinz Gross, Roland Gebert, Markus Aebi, and Kurt Wiithrich
iii
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Contents An extended DNA structure through deoxyribose-base 6623-6628 stacking induced by RecA protein
Taro Nishinaka, Yutaka Ito, Shigeyuki Yokoyama, and Takehiko Shibata
Covalent modification of the active site threonine of 6629-6634 proteasomal 13 subunits and the Escherichia coli homolog HslV by a new class of inhibitors
Matthew Bogyo, John S. McMaster, Maria Gaczynska, Domenico Tortorella, Alfred L. Goldberg, and Hidde Ploegh
The rational design and construction of a cuboidal 6635-6640 iron-sulfur protein
Christopher D. Coldren, Homme W. Hellinga, and John P. Caradonna
Modular organization of the catalytic center of 6641-6645 RNA polymerase
Arkady Mustaev, Maxim Kozlov, Vadim Markovtsov, Evgeny Zaychikov, Ludmila Denissova, and Alex Goldfarb
Defective prohormone processing and altered 6646-6651 pancreatic islet morphology in mice lacking active SPC2
Machi Furuta, Hideki Yano, An Zhou, Yves Rouille, Jens J. Holst, Raymond Carroll, Mariella Ravazzola, Lelio Orci, Hiroto Furuta, and Donald F. Steiner
Crystal structure of the homo-tetrameric DNA 6652-6657 binding domain of Escherichia coli single-stranded DNA-binding protein determined by multiwavelength x-ray diffraction on the selenomethionyl protein at 2.9-A resolution
Srinivasan Raghunathan, Cynthia S. Ricard, Timothy M. Lohman, and Gabriel Waksman
c-Myc transactivation of LDH-A: Implications for 6658-6663 tumor metabolism and growth
Hyunsuk Shim, Christine Dolde, Brian C. Lewis, Chyi-Sun Wu, Gerard Dang, Richard A. Jungmann, Riccardo Dalla-Favera, and Chi V. Dang
Bipartite substrate discrimination by human 6664-6669 nucleotide excision repair
Martin T. Hess, Urs Schwitter, Mario Petretta, Bernd Giese, and Hanspeter Naegeli
Binding of human virus oncoproteins to hDlg/SAP97, 6670-6675 a mammalian homolog of the Drosophila discs large tumor suppressor protein
Siu Sylvia Lee, Robert S. Weiss, and Ronald T. Javier
In vitro and in vivo characterization of novel mRNA 6676-6681 motifs that bind special elongation factor SelB
Stefanie J. Klug, Alexander Hiittenhofer, Matthias Kromayer, and Michael Famulok
Pacifastin, a novel 155-kDa heterodimeric proteinase 6682-6687 inhibitor containing a unique transferrin chain
Zicai Liang, Lars Sottrup-Jensen, Anna Aspan, Martin Hall, and Kenneth Soderhaill
DNA damage-dependent transcriptional arrest and 6688-6693 termination of RNA polymerase II elongation complexes in DNA template containing HIV-1 promoter
Zhuying Wang and Tariq M. Rana
Monomeric isomers of human interleukin 5 show that 6694-6699 1:1 receptor recruitment is sufficient for function
Jun Li, Richard Cook, Michael L. Doyle, Preston Hensley, Dean E. McNulty, and Irwin Chaiken
Mutations in HIV reverse transcriptase which alter 6700-6705 RNase H activity and decrease strand transfer efficiency are suppressed by HIV nucleocapsid protein
Craig E. Cameron, Madhumita Ghosh, Stuart F. J. Le Grice, and Stephen J. Benkovic
The recombination hotspot Chi is recognized by the 6706-6711 translocating RecBCD enzyme as the single strand of DNA containing the sequence 5'-GCTGGTGG-3'
Piero R. Bianco and Stephen C. Kowalczykowski
Alterations of the outer membrane composition in 6712-6717 Escherichia coli lacking the histone-like protein HU
Eric Painbeni, Martine Caroff, and Josette Rouviere-Yaniv
Activation of RNA polymerase II by topologically 6718-6723 linked DNA-tracking proteins
Mohamed Ouhammouch, Michael H. Sayre, James T. Kadonaga, and E. Peter Geiduschek
The abalone egg vitelline envelope receptor for sperm 6724-6729 lysin is a giant multivalent molecule
Willie J. Swanson and Victor D. Vacquier
Similar processes mediate glycopeptide export from 6730-6734 the endoplasmic reticulum in mammalian cells and Saccharomyces cerevisiae
Karin Romisch and Bassam R. S. Ali
BIOPHYSICS
Estimation of mean exocytic vesicle capacitance in 6735-6740 mouse adrenal chromaffin cells
Tobias Moser and Erwin Neher
Voltage gating of Escherichia coli porin channels: 6741-6745 Role of the constriction loop
Prashant S. Phale, Tilman Schirmer, Alexej Prilipov, Kuo-Long Lou, Ariane Hardmeyer, and Jurg P. Rosenbusch
CELL BIOLOGY
Identification of a nuclear matrix targeting signal in 6746-6751 the leukemia and bone-related AML/CBF-a transcription factors
Congmei Zeng, Andre J. van Wijnen, Janet L. Stein, Shari Meyers, Wuhua Sun, Lindsay Shopland, Jeanne B. Lawrence, Sheldon Penman, Jane B. Lian, Gary S. Stein, and Scott W. Hiebert
Vacuolar H+-ATPase in ocular ciliary epithelium 6752-6757 Martin B. Wax, Isao Saito, Tatyana Tenkova, Theodore Krupin, Bernard Becker, Nathan Nelson, Dennis Brown, and Stephen L. Gluck
Developmental regulation and the role of insulin and 6758-6763 insulin receptor in metanephrogenesis
Zheng Z. Liu, Anil Kumar, Kosuke Ota, Elisabeth I. Wallner, and Yashpal S. Kanwar
iv
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Contents Constitutive activation of a slowly migrating isoform 6764-6769 of Stat3 in mycosis fungoides: Tyrphostin AG490 inhibits Stat3 activation and growth of mycosis fungoides tumor cell lines
Mette Nielsen, Keld Kaltoft, Mette Nordahl, Carsten Ropke, Carsten Geisler, Tomas Mustelin, Pauline Dobson, Arne Svejgaard, and Niels 0dum
DEVELOPMENTAL BIOLOGY
Purification and molecular cloning of a secreted, 6770-6775 Frizzled-related antagonist of Wnt action
Paul W. Finch, Xi He, Michael J. Kelley, Aykut Cren, R. Paul Schaudies, Nicholas C. Popescu, Stuart Rudikoff, Stuart A. Aaronson, Harold E. Varmus, and Jeffrey S. Rubin
In vivo repopulating hematopoietic stem cells are 6776-6780 present in the murine yolk sac at day 9.0 postcoitus
Mervin C. Yoder, Kelly Hiatt, and Pinku Mukherjee
A "knockdown" mutation created by cis-element gene 6781-6785 targeting reveals the dependence of erythroid cell maturation on the level of transcription factor GATA-1
Michael A. McDevitt, Ramesh A. Shivdasani, Yuko Fujiwara, Haidi Yang, and Stuart H. Orkin
Continuous in vitro propagation of the malaria 6786-6791 parasite Plasmodium vivax
Claudia F. Golenda, Jun Li, and Ronald Rosenberg
ECOLOGY
Defensive production of formic acid (80%) by a 6792-6797 carabid beetle (Galerita lecontei)
Carmen Rossini, Athula B. Attygalle, Andres Gonzalez, Scott R. Smedley, Maria Eisner, Jerrold Meinwald, and Thomas Eisner
EVOLUTION
Evolution subverting essentiality: Dispensability of the 6798-6802 cell attachment Arg-Gly-Asp motif in multiply passaged foot-and-mouth disease virus
Miguel A. Martinez, Nuria Verdaguer, Mauricio G. Mateu, and Esteban Domingo
Ligand binding was acquired during evolution of 6803-6808 nuclear receptors
Hector Escriva, Rachid Safi, Catherine Hanni, Marie-Claire Langlois, Pierre Saumitou-Laprade, Dominique Stehelin, Andre Capron, Raymond Pierce, and Vincent Laudet
DNA sequence evidence for the segmental 6809-6814 allotetraploid origin of maize
Brandon S. Gaut and John F. Doebley
Likelihood-mapping: A simple method to visualize 6815-6819 phylogenetic content of a sequence alignment
Korbinian Strimmer and Arndt von Haeseler
Exon/intron structure of aldehyde dehydrogenase 6820-6825 genes supports the "introns-late" theory
Andrey Rzhetsky, Francisco Jose Ayala, Lily C. Hsu, Cheng Chang, and Akira Yoshida
GENETICS
Construction and characterization of a reovirus 6826-6830 double temperature-sensitive mutant
Michael R. Roner, Igor Nepliouev, Barbara Sherry, and Wolfgang K. Joklik
Selective amplification via biotin- and 6831-6836 restriction-mediated enrichment (SABRE), a novel selective amplification procedure for detection of differentially expressed mRNAs
Daniel J. Lavery, Luis Lopez-Molina, Fabienne Fleury-Olela, and Ueli Schibler
Photocarcinogenesis and inhibition of intercellular 6837-6841 adhesion molecule 1 expression in cells of DNA-repair-defective individuals
Constanze Ahrens, Markus Grewe, Mark Berneburg, Susanne Grether-Beck, Xavier Quilliet, Mauro Mezzina, Alain Sarasin, Alan R. Lehmann, Colin F. Arlett, and Jean Krutmann
Impaired fertility in mice deficient for the testicular 6842-6846 germ-cell protease PC4
Majambu Mbikay, Haidy Tadros, Norito Ishida, Charlie P. Lerner, Eve De Lamirande, Andrew Chen, Mohamed El-Alfy, Yves Clermont, Nabil G. Seidah, Michel Chretien, Claude Gagnon, and Elizabeth M. Simpson
Removal of polymerase-produced mutant sequences 6847-6850 from PCR products
Jane Smith and Paul Modrich
Gene targeting by linear duplex DNA frequently 6851-6856 occurs by assimilation of a single strand that is subject to preferential mismatch correction
W.-Y. Leung, A. Malkova, and J. E. Haber
The distribution of genes in the genomes of Gramineae 6857-6861 Abdelali Barakat, Nicolas Carels, and Giorgio Bemardi
Gene identification and DNA sequence analysis in the 6862-6867 GC-poor 20 megabase region of human chromosome 21
Jingwei Yu, Suhong Tong, Yiping Shen, and Fa-Ten Kao
RecA-like proteins are components of early meiotic 6868-6873 nodules in lily
Lorinda K. Anderson, Hildo H. Offenberg, W. M. H. C. Verkuijlen, and Christa Heyting
IMMUNOLOGY
A critical role for neutralizing-antibody-producing B 6874-6879 cells, CD4+ T cells, and interferons in persistent and acute infections of mice with lymphocytic choriomeningitis virus: Implications for adoptive immunotherapy of virus carriers
Oliver Planz, Stephan Ehl, Esther Furrer, Edit Horvath, Marie-Anne Briindler, Hans Hengartner, and Rolf M. Zinkernagel
The three-dimensional structure of an H-2Ld-peptide 6880-6885 complex explains the unique interaction of Ld with beta-2 microglobulin and peptide
Ganesaratnam K. Balendiran, Joyce C. Solheim, Aideen C. M. Young, Ted H. Hansen, Stanley G. Nathenson, and James C. Sacchettini
v
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Contents Major histocompatibility complex class II-transfected 6886-6891 tumor cells present endogenous antigen and are potent inducers of tumor-specific immunity
Todd D. Armstrong, Virginia K. Clements, Brian K. Martin, Jenny P.-Y. Ting, and Suzanne Ostrand-Rosenberg
Selective binding of bacterial toxins to major 6892-6897 histocompatibility complex class II-expressing cells is controlled by invariant chain and HLA-DM
Pascal M. Lavoie, Jacques Thibodeau, Isabelle Cloutier, Robert Busch, and Rafick-P. S6kaly
Ly-6C regulates endothelial adhesion and homing of 6898-6903 CD8+ T cells by activating integrin-dependent adhesion pathways
Arno Hanninen, Ilkka Jaakkola, Marko Salmi, Olli Simell, and Sirpa Jalkanen
The human cytomegalovirus US6 glycoprotein inhibits 6904-6909 transporter associated with antigen processing-dependent peptide translocation
Paul J. Lehner, Jaana T. Karttunen, Gavin W. G. Wilkinson, and Peter Cresswell
The amino terminus of JAK3 is necessary and sufficient 6910-6915 for binding to the common y chain and confers the ability to transmit interleukin 2-mediated signals
Min Chen, Alan Cheng, Yi-Qing Chen, Anka Hymel, Eric P. Hanson, Lida Kimmel, Yasuhiro Minami, Tadatsugu Taniguchi, Paul S. Changelian, and John J. O'Shea
MEDICAL SCIENCES
Efficient photoreceptor-targeted gene expression 6916-6921 in vivo by recombinant adeno-associated virus
John G. Flannery, Sergei Zolotukhin, M. Isabel Vaquero, Matthew M. LaVail, Nicholas Muzyczka, and William W. Hauswirth
Effect of tissue factor deficiency on mouse and 6922-6926 tumor development
John R. Toomey, Kenneth E. Kratzer, Nina M. Lasky, and George J. Broze, Jr.
RAB22 and RAB163/mouse BRCA2: Proteins that 6927-6932 specifically interact with the RAD51 protein
Ryushin Mizuta, Janine M. LaSalle, Hwei-Ling Cheng, Akira Shinohara, Hideyuki Ogawa, Neal Copeland, Nancy A. Jenkins, Marc Lalande, and Frederick W. Alt
Loss of the retinoblastoma protein-related p130 6933-6938 protein in small cell lung carcinoma
Kristian Helin, Karin Holm, Anita Niebuhr, Hans Eiberg, Niels Tommerup, Susanne Hougaard, Hans Skovgaard Poulsen, Mogens Spang-Thomsen, and Peter Norgaard
Role for Bcl-XL as an inhibitor of cytosolic 6939-6942 cytochrome C accumulation in DNA damage-induced apoptosis
Surender Kharbanlda, Pramod Pandey, Lesley Schofield, Sara Israels, Richard Roncinske, Kiyotsugu Yoshida, Ajit Bharti, Zhi-Min Yuan, Satya Saxena, Ralph Weichselbaum, Carlo Nalin, and Donald Kufe
Dwarfism and age-associated spinal degeneration of 6943-6947 heterozygote cmd mice defective in aggrecan
Hideto Watanabe, Ken Nakata, Koji Kimata, Isao Nakanishi, and Yoshihiko Yamada
Molecular delineation of the smallest commonly 6948-6953 deleted region of chromosome 5 in malignant myeloid diseases to 1-1.5 Mb and preparation of a PAC-based physical map
Nanding Zhao, Archontoula Stoffel, Pauline W. Wang, James D. Eisenbart, Rafael Espinosa III, Richard A. Larson, and Michelle M. Le Beau
Superoxide and peroxynitrite generation from 6954-6958 inducible nitric oxide synthase in macrophages
Yong Xia and Jay L. Zweier
Cloning and characterization of the Rl and R2 6959-6964 subunits of ribonucleotide reductase from Trypanosoma brucei
Anders Hofer, Peter P. Schmidt, Astrid Graslund, and Lars Thelander
Homo- and heterodimeric interactions between the 6965-6970 gene products of PKDI and PKD2
Leonidas Tsiokas, Emily Kim, Thierry Arnould, Vikas P. Sukhatme, and Gerd Walz
Virus dynamics and drug therapy 6971-6976 Sebastian Bonhoeffer, Robert M. May, George M. Shaw, and Martin A. Nowak
MICROBIOLOGY
An intestinal mucin is the target substrate for a 6977-6982 baculovirus enhancin
Ping Wang and Robert R. Granados
NEUROBIOLOGY
Novel expression mechanism for synaptic potentiation: 6983-6988 Alignment of presynaptic release site and postsynaptic receptor
Xiaping Xie, Jim-Shih Liaw, Michel Baudry, and Theodore W. Berger
"Willed action": A functional MRI study of the 6989-6994 human prefrontal cortex during a sensorimotor task
Fahmeed Hyder, Elizabeth A. Phelps, Christopher J. Wiggins, Kevin S. Labar, Andrew M. Blamire, and Robert G. Shulman
Area-specific regulation of -y-aminobutyric acid type A 6995-7000 receptor subtypes by thalamic afferents in developing rat neocortex
Jacques Paysan, Albrecht Kossel, Jurgen Bolz, and Jean-Marc Fritschy
Anatomic localization of alternatively spliced leptin 7001-7005 receptors (Ob-R) in mouse brain and other tissues
Hong Fei, Hirotaka J. Okano, Cai Li, Gwo-Hwa Lee, Connie Zhao, Robert Darnell, and Jeffrey M. Friedman
Heat transduction in rat sensory neurons by 7006-7011 calcium-dependent activation of a cation channel
David B. Reichling and Jon D. Levine
vi
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Contents Extracellular calcium sensed by a novel cation channel 7012-7017 in hippocampal neurons
Z.-G. Xiong, W.-Y. Lu, and J. F. MacDonald
Neurturin shares receptors and signal transduction 7018-7023 pathways with glial cell line-derived neurotrophic factor in sympathetic neurons
Douglas J. Creedon, Malu G. Tansey, Robert H. Baloh, Patricia A. Osborne, Patricia A. Lampe, Timothy J. Fahrner, Robert 0. Heuckeroth, Jeffrey Milbrandt, and Eugene M. Johnson, Jr.
Glutamine synthetase protects against neuronal 7024-7029 degeneration in injured retinal tissue
Rena Gorovits, Nili Avidan, Noa Avisar, Iftach Shaked, and Lily Vardimon
Membrane-associated molecules regulate the 7030-7035 formation of layer-specific cortical circuits
Valerie Castellani and Jurgen Bolz
In vivo activity-dependent plasticity at cortico-striatal 7036-7040 connections: Evidence for physiological long-term potentiation
S. Charpier and J. M. Deniau
Involvement of hippocampal cAMP/cAMP-dependent 7041-7046 protein kinase signaling pathways in a late memory consolidation phase of aversively motivated learning in rats
Ramon Bernabeu, Lia Bevilaqua, Patricia Ardenghi, Elke Bromberg, Paulo Schmitz, Marino Bianchin, Ivan Izquierdo, and Jorge H. Medina
A 10-amino acid sequence of fibroblast growth factor 7047-7052 2 is sufficient for its mitogenic activity on neural progenitor cells
Jasodhara Ray, Andrew Baird, and Fred H. Gage
PHARMACOLOGY
7-Chloro-3-methyl-3,4-dihydro-2H-1,2,4-benzothiadiazine 7053-7058 S,S-dioxide: A partial modulator of AMPA receptor desensitization devoid of neurotoxicity
F. Impagnatiello, A. Oberto, P. Longone, E. Costa, and A. Guidotti
PHYSIOLOGY
Molecular characterization of the sodium channel 7059-7064 subunits expressed in mammalian cerebellar Purkinje cells
Eleazar Vega-Saenz de Miera, Bernardo Rudy, Mutsuyuki Sugimori, and Rodolfo Llinas
Relationships between enzymatic flux capacities and 7065-7069 metabolic flux rates: Nonequilibrium reactions in muscle glycolysis
R. K. Suarez, J. F. Staples, J. R. B. Lighton, and T. G. West
AUTHOR INDEX
INFORMATION FOR AUTHORS
SIZING WORKSHEET
COPYRIGHT ASSIGNMENT FORM
CLASSIFIED ADVERTISEMENTS
Activation of heteromeric G protein-gated inward 7070-7075 rectifier K+ channels overexpressed by adenovirus gene transfer inhibits the excitability of hippocampal neurons
Markus U. Ehrengruber, Craig A. Doupnik, Youfeng Xu, Justine Garvey, Mark C. Jasek, Henry A. Lester, and Norman Davidson
PLANT BIOLOGY
The AP2 domain of APE TALA2 defines a large new 7076-7081 family of DNA binding proteins inArabidopsis
Jack K. Okamuro, Brian Caster, Raimundo Villarroel, Marc Van Montagu, and K. Diane Jofuku
Stress proteins on the yeast cell surface determine 7082-7087 resistance to osmotin, a plant antifungal protein
Dae-Jin Yun, Yuan Zhao, Jose M. Pardo, Meena L. Narasimhan, Barbara Damsz, Hyeseung Lee, Laura R. Abad, Matilde Paino D'Urzo, Paul M. Hasegawa, and Ray A. Bressan
A novel subviral agent associated with a geminivirus: 7088-7093 The first report of a DNA satellite
Ian B. Dry, Leslie R. Krake, Justin B. Rigden, and M. Ali Rezaian
Expression of a mutant ax-zein creates the floury2 7094-7097 phenotype in transgenic maize
Craig B. Coleman, Amy M. Clore, Jerry P. Ranch, Regina Higgins, Mauricio A. Lopes, and Brian A. Larkins
Overexpression of an Arabidopsis thaliana high-affinity 7098-7102 phosphate transporter gene in tobacco cultured cells enhances cell growth under phosphate-limited conditions
Norihiro Mitsukawa, Satoru Okumura, Yumiko Shirano, Shigeru Sato, Tomohiko Kato, Satoshi Harashima, and Daisuke Shibata
Purified vesicles of tobacco cell vacuolar and plasma 7103-7108 membranes exhibit dramatically different water permeability and water channel activity
Christophe Maurel, Frederique Tacnet, Josette Guiclui, Jean Guern, and Pierre Ripoche
PSYCHOLOGY
The hippocampus and memory for orderly 7109-7114 stimulus relations
Jeffery A. Dusek and Howard Bichenbaum
Spatial and temporal coherence in perceptual binding 7115-7119 Randolph Blake and Yuede Yang
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