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WRLFMD Quarterly Report April-June 2013 Reference Laboratory Contract Report 7/11/2013 WRLFMD
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Page 1: WRLFMD Quarterly Report April-June 2013 · WRLFMD Quarterly Report April-June 2013 2013 3 OIE/FAO Reference Laboratory Contract Report1,2 April-June 2013 Foot-and-Mouth Disease 1N.B.

WRLFMD Quarterly Report April-June 2013 Reference Laboratory Contract Report 7/11/2013 WRLFMD

Page 2: WRLFMD Quarterly Report April-June 2013 · WRLFMD Quarterly Report April-June 2013 2013 3 OIE/FAO Reference Laboratory Contract Report1,2 April-June 2013 Foot-and-Mouth Disease 1N.B.

WRLFMD Quarterly Report April-June 2013 2013

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Page 3: WRLFMD Quarterly Report April-June 2013 · WRLFMD Quarterly Report April-June 2013 2013 3 OIE/FAO Reference Laboratory Contract Report1,2 April-June 2013 Foot-and-Mouth Disease 1N.B.

WRLFMD Quarterly Report April-June 2013 2013

3

OIE/FAO Reference Laboratory Contract Report1,2

April-June 2013

Foot-and-Mouth Disease

1N.B. The content of this report is the property of WRLFMD®, The Pirbright Institute. For presentation,

publication or any other public use, please contact Dr. Jef Hammond, The Pirbright Institute,

[email protected]. 2 Copies of all the individual reports cited herein can be obtained from Dr. Jef Hammond, The Pirbright

Institute, [email protected].

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WRLFMD Quarterly Report April-June 2013 2013

4

Editor’s Note:

Please note that Dr Jef Hammond is leaving the Pirbright Institute on Monday 15th

July to take up the position of

director of the Elizabeth Macarthur Agricultural Institute in New South Wales Australia

http://www.dpi.nsw.gov.au/research/centres/emai

For future FMD reference laboratory enquiries please contact Don King ([email protected]) or

David Paton ([email protected]).

Summary

ASIA

Bhutan

A single sample from Bhutan, collected from cattle in Chukha on 06/06/2013 was identified as FMD

type O. Genoyping showed it to belong to the ME-SA topotype, Ind-2001d lineage and related to

viruses from the Indian sub-continent.

Cambodia

Two samples from the Kratie province, collected from cattle in September 2012, were identified as

FMD type O. Genotyping showed them to belong to the ME-SA topotype, PanAsia lineage. This

lineage is currently circulating in Southeast Asia and has reached P.R. China and East Kazakhstan.

PR China

Both FMD type O and type A have been reported in China (see table below). No recent genotyping

has been reported, so it is not clear how these outbreaks relate to each other.

Type Date Location Host

A 08/04/2013 Hailipaiquke Village, Luopu, Hetian, XINJIANG Cattle

A 15/05/2013 Xiaoquzi village, Gangou, Urumchi, XINJIANG Cattle

A 12/04/2013 Kare Village, Rikaze , TIBET Cattle

A 02/05/2013 Tajie village, Tajie, Lasa, TIBET Cattle

A 10/05/2013 Jiesha village, Naidong, Shannan, TIBET Cattle

A 24/05/2013 Yongjiu village, Bayi, Linzhi, TIBET Cattle

A 30/05/2013 Qudengyangge village, Dangxiong, Lasa, TIBET Cattle

A 07/05/2013 Chengbei district, Xining, QINGHAI Cattle

A 09/06/2013 Heping village, Xianggelila, Diqing, YUNNAN Cattle

O 20/05/2013 Zhonglou district, Zhonglou, Changzhou, JIANGSU Pigs

O 08/06/2013 Longzhong, Gangba, Rikaze , TIBET Cattle

Hong Kong SAR, PRC

A single sample, collected from pigs on the 02/04/2013 was received and FMD type O isolated.

Genotyping revealed the virus to belong to the CATHAY topotype.

Kazakhstan

Three outbreaks of FMD type A were reported in cattle in East Kazakhstan in May and June 2013:

11/05/2013, Village Akshoka, Akshokinsky, Urdzharsky;

03/06/2013, Akhmetbulak, Djanaulsky, Tarbagatay;

07/06/2013, Manyrak, Manyrak, Tarbagatay.

No genotyping results have been reported.

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WRLFMD Quarterly Report April-June 2013 2013

5

Lao PDR

Five samples, collected from cattle on 28/12/2012 in Vientiane, were received. FMD type O was

isolated from all five and genotyping showed these viruses belonged to the ME-SA topotype, PanAsia

lineage.

Palestinian Autonomous Territories

An outbreak of FMD occurred in calves in the Rafah area of the Gaza Strip in early April 2013.

Samples received showed FMD type A to be present and genotyping identified the virus as belonging

to the ASIA topotype, Iran-05 lineage, BAR-08 sub-lineage and to be very closely related to viruses

which are widespread in Egypt (see also the report on Egypt).

Russian Federation

Three distinct epizootics of FMD type A have been reported. One, consisting of three outbreaks in

cattle, in Zabajkal`skij Kray, Eastern Russia (near the Chinese and Mongolian borders) during late

March 2013. The second was in cattle near the Black Sea in Karachayevo-Cherkesskaya Resp. and

Krasnodarskiy Kray in June 2013. The third, again in cattle, was in Eastern Russia in Amurskaya

Oblast at the end of June 2013. It is not clear if these three events are linked.

Date Location

25/03/2013 Village Srednyaya - Borsya, Kalgansky raion, ZABAJKAL`SKIJ KRAY

28/03/2013 Village Duroi, Priargunsky raion, ZABAJKAL`SKIJ KRAY

28/03/2013 Village Priargunsk, Priargunsky raion, ZABAJKAL`SKIJ KRAY

03/06/2013 Mountain region Garnukha, Urupsky raion, KARACHAYEVO-CHERKESSKAYA RESP.

13/06/2013 Cossack village Pregradnaya, Urupsky raion, KARACHAYEVO-CHERKESSKAYA RESP.

15/06/2013 Rural community Solenoye, Mostovsky raion, KRASNODARSKIY KRAY

26/06/2013 S. Andryuki, Mostovskoy, KRASNODARSKIY KRAY

26/06/2013 Psebay, Mostovskoy, KRASNODARSKIY KRAY

24/06/2013 S. Grodekovo, Blagoveshensk raion, AMURSKAYA OBLAST

Taiwan POC

FMD type O sub-clinically infected pigs were detected in three areas of Taiwan POC during May 2013

during routine sero-surveys:

17/05/2013, Baozhong Township, YUN-LIN;

27/05/2013, Wuri District, T'AI-CHUNG SHIH;

16/05/2013, Jinhu Township, KINMEN.

As no virus could be isolated no genotyping was performed.

Thailand

Cell culture passaged virus isolates received from Thailand revealed the presence of FMD type O and

type A in cattle sampled between August 2012 and February 2013. Seven type A viruses belonged to

the ASIA topotype, Sea-97 lineage and four type O viruses belonged to the SEA topotype, Mya-98

lineage. However, one type O virus belonged to the CATHAY topotype and was only three nucleotides

different to an old Thai reference/vaccine virus, O/Bangkok/60, suggesting that it may be a laboratory

contaminant.

Turkey

Samples collected from cattle, sheep and goats between December 2012 and March 2013 were

received. FMD types O, A and Asia 1 were identified. Genotyping showed the type O viruses to

belong to the ME-SA topotype, PanAsia-2 lineage (with 12 belonging to the FAR-09 sub-lineage and

one belonging to the ANT-10 sub-lineage). Genotyping of the type A viruses showed that all 17

belonged to the ASIA topotype, Iran-05 lineage, SIS-10 sub-lineage. Genotyping of the type Asia 1

viruses showed all five to belong to the Sindh-08 lineage.

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WRLFMD Quarterly Report April-June 2013 2013

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Vietnam

Two clinical samples and seven virus isolates, collected from cattle or water buffalo in two regions of

Vietnam during March and April 2013, were received. FMD type A was identified in five of these and

genotyping showed them to belong to the ASIA topotype, Sea-97 lineage.

AFRICA

Egypt

Outbreaks of FMD type A are widespread in Egypt and samples received all belonged to the ASIA

topotype, Iran-05 lineage, BAR-08 sub-lineage (which has been present in the country since at least

2010). An outbreak of FMD type A in Rafah, Gaza Strip, Palestinian Autonomous Territories in April

2013 was very closely related to the Egyptian viruses. It is not clear which other FMD types/topotypes

are currently circulating in Egypt.

Ethiopia

Outbreaks of FMD type O were confirmed following the receipt of samples from the Oromia, Amhra

and Southern Nations, Nationalities, and Peoples' (SNNP) Regions. Genotyping showed the EA-3

topotype to be present in Oromia and Amhra, but EA-4 was present in SNNP (Mizan, Bench Maji

Zone). The EA-4 topotype has rarely been detected, previously having been found in Uganda in 1998-

99, Ethiopia in 2005 (also in Mizan, Bench Maji) and Kenya in 2010.

Zimbabwe

Two epizootics have been reported in April/May. The first consisted of five outbreaks in the southeast

of Zimbabwe and were in cattle; the serotype involved has not been reported (diagnosis was by RT-

PCR at the National Reference Laboratory):

12/04/2013, Mkwasine, Chiredzi, Masvingo;

31/05/2013, Manzvire 2 Dip Tank, Chisumbanje, Chipinge, Manicaland;

15/05/2013, Levanga, Chiredzi, Masvingo;

15/05/2013, Gudo, Chiredzi, Masvingo;

15/05/2013, Masapasi, Chiredzi, Masvingo.

The second was on 25/04/2013 at Drysdale, Umguza, Matabeleland North (in the west of Zimbabwe)

in cattle and was reported as being caused by FMD type SAT 3. This appears to have been diagnosed

by antibody detection ELISA and therefore remains to be confirmed by virus isolation.

SOUTH AMERICA

No new outbreaks of FMD were reported in the region.

Uncharacterised FMD viruses

A number of outbreaks have occurred where samples have not been sent to the WRLFMD®. It is probable

that the countries involved have performed their own genetic characterisation; however, through the

OIE/FAO laboratory network we would also like to encourage the submission of samples (or complete VP1

sequences) to the WRLFMD®.

An up-to-date list and reports of FMD viruses characterised by sequencing can be found at the following

website: http://www.wrlfmd.org/fmd_genotyping/2013.htm.

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WRLFMD Quarterly Report April-June 2013 2013

7

Results from samples received at WRLFMD® (status of samples being tested) are shown in Table 1 and a

complete list of clinical sample diagnostics made by the WRLFMD® between April and Jun 2013 is shown in

Annex 1 Table A. A record of all samples received to The Pirbright Institute (April to June 2013) is shown in

Annex 1 Table B.

Table 1: Status of sequencing of samples received by the WRLFMD from April to June 2013.

Batch Date Recd. Country Serotype No. of samples No. of sequences Status

WRLFMD/2013/00006 12/04/2013 Turkey O 13 13 Completed

WRLFMD/2013/00006 12/04/2013 Turkey A 17 17 Completed

WRLFMD/2013/00006 12/04/2013 Turkey Asia 1 5 5 Completed

WRLFMD/2013/00007 18/04/2013 Ethiopia O 5 5 Completed

WRLFMD/2013/00009 02/05/2013 Palestinian AT A 3 3 Completed

WRLFMD/2013/00010 08/05/2013 Hong Kong SAR, PRC O 1 1 Completed

WRLFMD/2013/00011 24/04/2013 Vietnam A 5 5 Completed

WRLFMD/2013/00012 29/05/2013 Egypt A 10 10 Completed

WRLFMD/2013/00013 17/06/2013 Cambodia O 2 2 Completed

WRLFMD/2013/00014 17/06/2013 Laos O 5 5 Completed

WRLFMD/2013/00015 17/06/2013 Thailand O 5 5 Completed

WRLFMD/2013/00015 17/06/2013 Thailand A 7 7 Completed

WRLFMD/2013/00016 27/06/2013 Bhutan O 1 1 Completed

Total 79 79

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WRLFMD Quarterly Report April-June 2013 2013

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Detailed Analysis:

ASIA

Bhutan WRLFMD/2013/00016

Date received: 27/06/2013

No. of samples: 1

O (ME-SA/Ind-2001d): 1

O

Bumthang

Chukha Dagana

Gasa

Haa

Lhuntse

Mongar

Paro

Pemagatshel

Punakha

Samdrup JongkharSamtse Sarpang

Thimphu

Trashigang

Trashiyangtse

Trongsa

Tsirang

Wangdue Phodrang

Zhemgang

40 km

20 mi

©d-m

aps.

c om

BHU/1/2013

O/BHU/9/2009

O/BHU/10/2009

O/BHU/8/2009

O/BHU/2/2009

O/IND/27/2012* (KC506510)

O/BHU/19/2009

O-GD/NEP/1/2010

O/IND/29/2010* (KC506455)

O/IND/132/2010* (KC506472)

O/NEP/3/2010

O/BHU/4/2009

O/BAN/23/2009 (HQ630684)

O/NEP/6/2010

O/IND/102/2010* (KC506466)

O/IND/181/2010* (KC506477)

O/BHU/6/2009

O/BAN/26/2009 (HQ630687)

O/BAN/25/2009 (HQ630686)

O/BAN/27/2009 (HQ630688)

O/IND/30/2010* (KC506456)

O/BHU/18/2009

O/IND/191/2010* (KC506480)

O/NEP/17/2010

O/BAN/2/2009 (HQ630677)

O/IND/182/2010* (KC506478)

O/BHU/5/2009

O/IND/148/2010* (KC506474)

O/BAN/28/2009 (HQ630689)

O/BAN/29/2009 (HQ630690)

O/BAN/30/2009 (HQ630691)

O/BAN/31/2009 (HQ630692)

O/NEP/5/2010

O/BHU/7/2009

O/BAN/9/2009 (HQ630681)

O/BHU/41/2009

O/BHU/37/2009

O/BHU/40/2009

O/UPMe1009/IND/2009 (JX070610)

O/BHU/20/2009

O/BHU/25/2009

O/BHU/23/2009

O/BHU/26/2009

O/IND/32/2012* (KC506511)

O/BHU/3/2009

O/BHU/16/2009

O/IND/4/2011* (KC506485)

O/IND/5/2011* (KC506486)

O/IND/6/2011* (KC506487)

O/IND/2/2011* (KC506484)

O/IND/38/2011* (KC506492)

O/BAN/11/2009 (HQ630682)

O/IND/146/2010* (KC506473)

O/IND/220/2010* (KC506481)

O/IND/149/2010* (KC506475)

O/NEP/7/2010

O/BAN/1/2009 (HQ630676)

O/BHU/1/2013

O/BHU/12/2012

O/TNNa1211/IND/2011 (JX070623)

d

c O/UAE/4/2008

a O/KUW/3/97 (DQ164904)

b O/OMN/7/2001 (DQ164941)

Ind-2001

Irn-2001

PanAsia

PanAsia-2

Pak-98

O/IND/53/79 (AF292107)

ME-SA

O/IND/R2/75* (AF204276)

O1/Manisa/TUR/69 (AY593823)ME-SA

SEA

EA-3

EA-1

WA

EA-4

EA-2

CATHAY

ISA-1

ISA-2

EURO-SA

100

100

100

99

99

100

72

99

79

85

91

8994

100

73

90

87

100

98

87

84

87

97

0.02

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WRLFMD Quarterly Report April-June 2013 2013

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Cambodia WRLFMD/2013/00013

Date received: 17/06/2013

No. of samples: 2

O (ME-SA/PanAsia): 2

60 km

40 mi

© Daniel Dalet / d-maps.com

ODDAR MEANCHEY

PURSAT

BATTAMBANG

BANTEAY

MEANCHEYSIEM

REAP

KAMPOT

KAMPONG

SPEUKOH

KONG

TAKEO

SIHANOUKVILLE

STUNG

TRENG

KAMPONG

THOM

RATANAKIRI

MONDOLKIRI

PREAH

VIHEAR

KAMPONG

CHAM

KRATIE

KANDAL

KAMPONG

CHHNANG

SVAY

RIENG

PREY

VENG

Phnom Penh

PAILIN

O

CAM/1/2012

CAM/2/2012

O/CHA/7/2011* (JF837375)

O/VIT/12/2011

O/VIT/22/2011

O/VIT/9/2011

O/VIT/4/2011

O/VIT/2/2011

O/VIT/21/2011

O/VIT/10/2011

O/VIT/11/2011

O/LAO/2/2010

O/VIT/7/2011

O/VIT/8/2011

O/LAO/1/2012

O/LAO/2/2012

O/LAO/3/2012

O/LAO/4/2012

O/LAO/5/2012

O/VIT/26/2011

O/VIT/34/2011

O/VIT/35/2011

O/VIT/27/2011

O/VIT/30/2011

O/VIT/5/2011

O/VIT/6/2011

O/VIT/16/2011

O/VIT/17/2011

O/Kazakhstan/Aug2011 (ARRIAH)

O/Kurchum/KAZ/08/2011* (JQ765581)

O/Urdzhaz/KAZ/12/2011* (JQ765582)

O/VIT/37/2011

O/VIT/14/2011

O/VIT/13/2011

O/VIT/36/2011

O/VIT/16/2010

O/VIT/28/2011

O/VIT/31/2011

O/VIT/29/2011

O/VIT/1/2012

O/VIT/4/2012

O/VIT/9/2012

O/VIT/3/2012

O/VIT/8/2012

O/VIT/5/2012

O/VIT/10/2012

O/TAI/7/2011

O/VIT/3/2011

O/VIT/32/2011

O/VIT/14/2012

O/VIT/23/2011

O/VIT/7/2010

O/VIT/21/2010

O/VIT/23/2010

O/VIT/20/2010

O/LAO/1/2011

O/LAO/2/2011

O/VIT/14/2010

O/VIT/3/2010

O/VIT/6/2010

O/CAM/5/2010

O/CAM/8/2010

O/VIT/8/2010

O/VIT/12/2010

O/VIT/9/2010

O/VIT/19/2010

O/CAM/4/2010

O/VIT/22/2010

O/VIT/10/2010

O/VIT/11/2010

O/VIT/1/2011

O/VIT/4/2010

O/CAM/2/2010

O/VIT/13/2010

O/CAM/1/2010

O/CAM/3/2010

O/CAM/6/2010

O/CAM/1/2012

O/CAM/2/2012

O/UKG/35/2001 (AJ539141)

PanAsia

PanAsia-2

Irn-2001

Ind-2001

Pak-98

O/IND/53/79 (AF292107)

O/IND/R2/75* (AF204276)

O1/Manisa/TUR/69 (AY593823)

ME-SA

SEA

EA-3

EA-2

EA-4

WA

EA-1

CATHAY

ISA-1

ISA-2

EURO-SA

99

99

99

99

99

99

99

82

71

86

87

99

99

97

91

99

91

87

89

87

73

0.02

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WRLFMD Quarterly Report April-June 2013 2013

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Hong Kong SAR, PRC WRLFMD/2013/00010

Date received: 08/05/2013

No. of samples: 1

O (CATHAY): 1

(location not given)

O/HKN/8/2011

O/HKN/9/2011

O/HKN/7/2011

O/HKN/5/2011

O/HKN/3/2011

O/HKN/4/2011

O/HKN/6/2011

O/HKN/1/2013

O/HKN/26/2010

O/HKN/3/2008

O/HKN/4/2008

O/HKN/1/2008

O/HKN/2/2008

O/HKN/1/2009

O/HKN/2/2009

O/HKN/3/2007

O/HKN/4/2007

O/HKN/1/2006

O/HKN/2/2006

O/HKN/4/2006

O/HKN/5/2006

O/HKN/6/2006

O/HKN/24/2005

O/HKN/3/2006

O/HKN/22/2005

O/HKN/23/2005

O/HKN/25/2005

O/HKN/19/2005

O/HKN/20/2005

O/HKN/17/2005

O/HKN/18/2005

O/HKN/14/2005

O/HKN/12/2005

O/HKN/15/2005

O/HKN/9/2004 (DQ164886)

O/HKN/9/2005

O/HKN/10/2005

O/HKN/12/2004 (DQ164889)

O/HKN/6/2004 (DQ164883)

O/HKN/3/2004 (DQ164881)

O/HKN/8/2004 (DQ164885)

O/HKN/11/2004 (DQ164888)

O/HKN/4/2004 (DQ164882)

O/HKN/7/2004 (DQ164884)

O/HKN/10/2004 (DQ164887)

O/HKN/13/2004

O/HKN/2/2003 (DQ164879)

O/HKN/3/2003 (DQ164880)

O/HKN/19/2001 (DQ164876)

O/HKN/1/2002 (DQ164877)

O/HKN/2002 (AF525458)

O/PHI/7/96 (AJ294926)

O/Yunlin/TAW/97 (AF308157)

O/HKN/6/83 (AJ294919)

O/HKN/21/70 (AJ294911)

CATHAY

EURO-SA

ISA-2

ISA-1

EA-2

ME-SA

SEA

EA-3

EA-4

EA-1

WA

100

100

99

99

100100

85

75

70

99

97

99

71

96

100

95

99

83

82

98

99

99

99

99

90

100

98

92

80

73

87

74

0.02

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WRLFMD Quarterly Report April-June 2013 2013

11

Laos WRLFMD/2013/00014

Date received: 17/06/2013

No. of samples: 5

O (ME-SA/PanAsia): 5

40 km

20 mi

© Daniel Dalet / d-maps.com

Attapeu

Bokeo

Bolikhamsai

Champasak

Hua Phan

Khammouane

Luang

Namtha

Luang

PhrabangOudomxay

Phongsali

Sainyabuli

Salavan

Savannakhet

Sekong

Vientiane

Prefecture

Vientiane

Province

Xieng

Khaung

O

LAO/1/2012

LAO/2/2012

LAO/3/2012

LAO/4/2012

LAO/5/2012

O/CHA/7/2011* (JF837375)

O/VIT/12/2011

O/VIT/22/2011

O/VIT/9/2011

O/VIT/4/2011

O/VIT/2/2011

O/VIT/21/2011

O/VIT/10/2011

O/VIT/11/2011

O/LAO/2/2010

O/VIT/7/2011

O/VIT/8/2011

O/LAO/1/2012

O/LAO/2/2012

O/LAO/3/2012

O/LAO/4/2012

O/LAO/5/2012

O/VIT/26/2011

O/VIT/34/2011

O/VIT/35/2011

O/VIT/27/2011

O/VIT/30/2011

O/VIT/5/2011

O/VIT/6/2011

O/VIT/16/2011

O/VIT/17/2011

O/Kazakhstan/Aug2011 (ARRIAH)

O/Kurchum/KAZ/08/2011* (JQ765581)

O/Urdzhaz/KAZ/12/2011* (JQ765582)

O/VIT/37/2011

O/VIT/14/2011

O/VIT/13/2011

O/VIT/36/2011

O/VIT/16/2010

O/VIT/28/2011

O/VIT/31/2011

O/VIT/29/2011

O/VIT/1/2012

O/VIT/4/2012

O/VIT/9/2012

O/VIT/3/2012

O/VIT/8/2012

O/VIT/5/2012

O/VIT/10/2012

O/TAI/7/2011

O/VIT/3/2011

O/VIT/32/2011

O/VIT/14/2012

O/VIT/23/2011

O/VIT/7/2010

O/VIT/21/2010

O/VIT/23/2010

O/VIT/20/2010

O/LAO/1/2011

O/LAO/2/2011

O/VIT/14/2010

O/VIT/3/2010

O/VIT/6/2010

O/CAM/5/2010

O/CAM/8/2010

O/VIT/8/2010

O/VIT/12/2010

O/VIT/9/2010

O/VIT/19/2010

O/CAM/4/2010

O/VIT/22/2010

O/VIT/10/2010

O/VIT/11/2010

O/VIT/1/2011

O/VIT/4/2010

O/CAM/2/2010

O/VIT/13/2010

O/CAM/1/2010

O/CAM/3/2010

O/CAM/6/2010

O/CAM/1/2012

O/CAM/2/2012

O/UKG/35/2001 (AJ539141)

PanAsia

PanAsia-2

Irn-2001

Ind-2001

Pak-98

O/IND/53/79 (AF292107)

O/IND/R2/75* (AF204276)

O1/Manisa/TUR/69 (AY593823)

ME-SA

SEA

EA-3

EA-2

EA-4

WA

EA-1

CATHAY

ISA-1

ISA-2

EURO-SA

99

99

99

99

99

99

99

82

71

86

87

99

99

97

91

99

91

87

89

87

73

0.02

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WRLFMD Quarterly Report April-June 2013 2013

12

Palestinian Autonomous Territories WRLFMD/2013/00009

Date received: 02/05/2013

No. of samples: 3

A (ASIA/Iran-05BAR-08

): 3

5 km

© Daniel Dalet / d-maps.com

3 mi

PAT/10/2013

PAT/11/2013

PAT/12/2013

A

A/BAR/6/2009

A/KUW/6/2009

A/KUW/4/2009

A/ISR/7/2009

A/4236/IRQ/2009 (PIADC) (JN099690)

A/IRQ/11/2009

A/IRN/22/2009

A/IRN/2/2009

A/IRN/29/2009

A/IRQ/12/2009

A/ISR/3/2009

A/ISR/5/2009

A/IRN/21/2009

A/IRQ/10/2009

A/IRQ/15/2009

A/IRN/11/2009

A/IRN/12/2009

A/4247/IRQ/2009 (PIADC) (JN099696)

A/4240/IRQ/2009 (PIADC) (JN099694)

A/4244/IRQ/2009 (PIADC) (JN099695)

A/4257/IRQ/2009 (PIADC) (JN099701)

A/KUW/5/2009

A/PAT/6/2009

A/ISR/1/2009

A/LIB/1/2009

A/LIB/10/2009

A/LIB/11/2009

A/LIB/117/2009

A/BAR/6/2008

A/IRN/5/2009

A/IRN/6/2009

A/EGY/2/2011

A/EGY/9/2011

A/PAT/10/2013

A/PAT/11/2013

A/PAT/12/2013

BAR-08

AFG-07 A/AFG/6/2007

HER-10 A/AFG/10/2010

SIS-12 A/IRN/15/2012

FAR-09 A/IRN/78/2009

SIS-10 A/IRN/125/2010

ARD-07 A/TUR/1/2008

A/IRN/1/2005 (EF208769)

EZM-07 A/TUR/33/2008

QAZ-11 A/IRN/9/2011

ESF-10 A/IRN/9/2010

Iran-05

Thai-87

Sea-97

Iran-99

Iran-96

Iran-87

A22

A15

ASIA

EURO-SA

AFRICA

98

99

97

100

94

100

89100

71

97

94

89

73

88

92

0.02

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WRLFMD Quarterly Report April-June 2013 2013

13

Thailand WRLFMD/2013/00015

Date received: 17/06/2013

No. of samples: 13

O (SEA/Mya-98): 4

O (CATHAY): 1

A (ASIA/Sea-97): 7

FMDV-GD: 1

Chiang Mai

Chiang Rai

KamphaengPhet

Nakhon Sawan

Nan

Phayao

Phichit

Phitsanulok

Phrae

Tak

Uthai Thani

Uttaradit

AC.

Buriram

KalasinKhon Kaen

Loei

Nakhon Ratchasima

NBL.

Roi Et

Sakhon Nakhon

Si SaketSurin

Ubon Ratchathani

Udon Thani

AT: Ang Thong AC: Ay: AyutthayaBa: BangkokCh: ChainatNBL: NN: Nakhon NayokNP: Nakhon PathomNo: NonthaburiPT: Pathum ThaniSa: SP: Samut PrakanSS: Samut SakhonSSo: Samut SongkhramSi: Singburi

Amnat Charoen

Nong Bua Lamphu

Saraburi

AT.

Ay.

Ba.

Ch.

Kanchanaburi

Lopburi

NN.

NP.No.

PT.

Phetchaburi

Prachuap Khiri Khan

Ratchaburi SP.SS.

Sso.

Sa.

Si.

Chonburi

Rayong

Sa Kaeo

Trat

Chumpon

KrabiNakhon Si Thammarat

Narathiwat

Pattani

Phang Nga

PhattalungPhuket

Ranong

Songkhla

Surat Thani

Trang

Yala

Bueng KanNong Khai

©d

- ma

ps

. co

m

150 km

100 mi

O

A

FMDV-GD

TAI/1/2013

TAI/2/2013

TAI/3/2013

TAI/13/2012

TAI/15/2012

TAI/20/2012

TAI/17/2012

TAI/18/2012

TAI/19/2012TAI/4/2013

TAI/5/2013

TAI/16/2012

TAI/14/2012

Page 14: WRLFMD Quarterly Report April-June 2013 · WRLFMD Quarterly Report April-June 2013 2013 3 OIE/FAO Reference Laboratory Contract Report1,2 April-June 2013 Foot-and-Mouth Disease 1N.B.

WRLFMD Quarterly Report April-June 2013 2013

14

O/MAY/23/2009

O/MAY/24/2009

O/MAY/27/2009

O/TAI/17/2009 (HQ116264)

O/TAI/15/2009 (HQ116262)

O/MAY/22/2009

O/TAI/16/2009 (HQ116263)

O/VN/TQ160/2009 (HM055497)

O/TAI/13/2009 (HQ116261)

O/TAI/12/2009 (HQ116260)

O/VN/SL186/2009 (HM055505)

O/VN/SL191/2009 (HM055507)

O/VN/SL192/2009 (HM055508)

O/VN/DB04/2010 (HQ260716)

O/MOG/CO3/2010* (JQ070325)

O/MOG/3/2010 (JQ070310)

O/MOG/4/2010 (JQ070311)

O/MOG/56/2010* (JQ070326)

O/MOG/1/2010 (JQ070308)

O/MOG/2/2010 (JQ070309)

O/RUS/Aug 2010 (JQ070330)

O/MOG/6/2010 (JQ070313)

O/MOG/66/2010* (JQ070327)

O/MOG/5/2010 (JQ070312)

O/MOG/7/2010 (JQ070314)

O/MOG/77/2010* (JQ070328)

O/VN/SL144/2009 (HM055495)

O/VN/PT170/2009 (HM055501)

O/VN/SL01/2010 (HQ260713)

O/VN/SL02/2010 (HQ260714)

O/TAI/23/2009 (HQ116270)

O/VIT/2/2010 (JQ070322)

O/TAI/19/2009 (HQ116266)

O/LAO/1/2010

O/VN/HB139/2009 (HM055494)

O/MAY/20/2009 (HQ116218)

O/MAY/21/2009 (HQ116219)

O/VN/LC03/2010 (HQ260715)

O-GD/MAY/29/2009

O/VN/HB162/2009 (HM055498)

O/VN/HB166/2009 (HM055499)

O/VN/TQ06/2010 (HQ260717)

O/MAY/25/2009

O/MAY/26/2009

O/MAY/7/2010

O/TAI/14/2012

O/TAI/18/2012

O/TAI/3/2008 (HQ116251)

O/TAI/7/2008 (HQ116254)

O/TAI/2/2008 (HQ116250)

O/TAI/12/2008 (HQ116255)

O/MAY/9/2007 (HQ116212)

O/LAO/1/2007 (HQ116175)

O/TAI/7/2007 (HQ116243)

O/MAY/4/2007 (HQ116208)

O/MAY/7/2007 (HQ116211)

O/MYA/1/2009

O/MYA/9/2009 (HQ116230)

O/MYA/12/2009 (JQ070318)

O/TAI/8/2005 (HQ116237)

O/TAI/17/2012

O/TAI/1/2013

O/TAI/10/2010

O/MAY/12/2010

O/MAY/8/2010

O/VIT/5/2010 (JQ070323)

O/TAI/6/2010

O/VIT/18/2010

O/TAI/27/2009

O/TAI/2/2010

O/TAI/5/2010

O/TAI/4/2010

O/TAI/3/2010

O/MAY/13/2010

O/TAI/9/2010

O/MYA/7/98 (DQ164925)

Mya-98

O/TAI/189/87* (TRRL)

Cam-94

SEA

ME-SA

EA-2

EA-4

WA

EA-1

EA-3

ISA-2

EURO-SA

ISA-1 O/Akesu/CHA/58 (AF511039)

O/OMIII/Akesu/CHA/58 (AY359854)

O/TAI/19/2012

O/Bangkok/TAI/60

O/HKN/27/77

O/HKN/33/77 (AJ294916)

O/HKN/6/83 (AJ294919)

O/PHI/7/96 (AJ294926)

O/Yunlin/TAW/97 (AF308157)

O/CHA/F29 (AF403048)

O/HKN/21/70 (AJ294911)

O/Thalheim/AUR/81

O/HKN/14/82 (AJ294917)

O/Wuppertal/GER/82

O/HKN/1/73 (AJ294912)

O/HKN/19/73 (AJ294913)

O/HKN/3/75

CATHAY99

99

86

90

99

99

98

86

99

99

78

99

99

99

98

83

72

70

86

99

99

89

99

97

99

8773

77

87

85

85

86

95

83

74

84

84

88

0.02

A/VIT/19/2012

A/VIT/20/2012

A/VIT/18/2012

A/VIT/17/2012

A/VIT/16/2012

A/VIT/15/2012

A/TAI/13/2012

A/TAI/16/2012

A/MAY/1/2012

A/TAI/15/2011

A/TAI/24/2011

A/TAI/18/2011

A/TAI/12/2011

A/TAI/17/2011

A/MAY/19/2011

A/TAI/13/2011

A/TAI/6/2011

A/TAI/8/2011

A/TAI/9/2011

A/TAI/23/2011

A/TAI/11/2011

A/MAY/2/2011

A/TAI/10/2011

A/TAI/19/2011

A/TAI/20/2011

A/TAI/10/2012

A/MAY/3/2012

A/MAY/4/2012

A/TAI/1/2012

A/TAI/2/2012

A/TAI/7/2010

A/THA 67-3/10* (TRRL)

A/THA 66-1/10* (TRRL)

A/TAI/3/2011

A/TAI/16/2011

A/TAI/1/2011

A/TAI/8/2010

A/THA 69-6/10* (TRRL)

A/MAY/17/2011

A/MAY/4/2011

A/MAY/5/2012

A/MAY/20/2011

A/TAI/9/2012

A/TAI/3/2012

A/TAI/4/2012

A/TAI/7/2012

A/TAI/12/2012

A/TAI 4/12*

A/TAI 3/12*

A/TAI/8/2012

A/TAI/5/2012

A/TAI/6/2012

A/QHXN-CHA-2013-B (LVRI)

A/TAI/15/2012

A/GDMM-CHA-2013-S (LVRI)

A/Zabaikalsky/RUS/2013 (ARRIAH)

A/TAI/3/2013

A/TAI/4/2013

A/TAI/2/2013

A/VIT/3/2013

A/VIT/1/2013

A/VIT/4/2013

A/VIT/5/2013

A/VIT/6/2013

A/TAI/7/2003 (HQ116312)

A/TAI/5/2013

A/VIT/7/2009 (HQ116383)

A/VN/20/2009* (GQ406252)

A/VIT/5/2009 (HQ116381)

A/TAI/8/2008 (HQ116337)

A/TAI 47-1/08* (TRRL)

A/TAI 63/08* (TRRL)

A/TAI/14/2008 (HQ116342)

A/TAI/11/2008 (HQ116340)

A/VIT/17/2010

A/VIT 1/10* (TRRL)

A/VIT/1/2010 (JQ070332)

A/TAI/7/2009 (HQ116350)

A/TAI/9/2009 (HQ116352)

A/TAI/8/2009 (HQ116351)

A/TAI/4/2008 (HQ116336)

A/TAI/9/2008 (HQ116338)

A/TAI/10/2008 (HQ116339)

A/TAI/13/2008 (HQ116341)

A/MAY/2/2009 (HQ116305)

A/TAI/17/2008 (HQ116345)

A/TAI 68/08* (TRRL)

A/TAI/5/2009 (HQ116348)

A/LAO/4/2008 (HQ116295)

A/TAI/15/2008 (HQ116343)

A/TAI/19/2008 (HQ116347)

A/TAI/16/2008 (HQ116344)

A/TAI 67/08* (TRRL)

A/TAI/6/2009 (HQ116349)

A/HuBWH/CHA/2009 (JF792355)

A/VIT/2/2009 (HQ116378)

A/VIT/8/2009 (HQ116384)

A/VIT/4/2008 (HQ116372)

A/VIT/5/2008 (HQ116373)

A/VIT/3/2008 (HQ116371)

A/VIT/8/2008 (HQ116376)

A/VN/02/2009* (GQ406248)

A/VN/03/2009* (GQ406249)

A/VIT/7/2008 (HQ116375)

A/VIT/4/2009 (HQ116380)

A/VN/11/2009* (GQ406250)

A/VIT/3/2009 (HQ116379)

A/VIT/2/2008 (HQ116370)

A/VIT/6/2008 (HQ116374)

A/VIT/1/2009 (HQ116377)

A/MAY/9/2009 (HQ116306)

A/VN/09/2009* (GQ406247)

A/TAI/2/97 (EF208778)

Sea-97

Thai-87

Iran-87

A22

Iran-96

Iran-99

Iran-05

A15

ASIA

EURO-SA

AFRICA

99

99

74

99

99

88

75

82

96

99

99

86

99

74

93

70

99

99

92

83

99

99

95

91

97

74

99

77

75

75

72

0.02

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WRLFMD Quarterly Report April-June 2013 2013

15

Turkey WRLFMD/2013/00006

Date received: 12/04/2013

No. of samples: 40

O (ME-SA/PanAsia-2FAR-09

): 12

O (ME-SA/PanAsia-2ANT-10

): 1

A (ASIA/Iran-05SIS-10

): 17

Asia1 (Sindh-08): 5

FMDV-GD: 1

NVD: 4

O/ISR/11/2011

O/ISR/23/2011

O/ISR/15/2011

O/ISR/17/2011

O/ISR/16/2011

O/ISR/13/2011

O/ISR/14/2011

O/ISR/21/2011

O/ISR/8/2011

O/ISR/12/2011

O/ISR/26/2011

O/ISR/25/2011

O/ISR/24/2011

O/ISR/6/2011

O/ISR/9/2011

O/ISR/5/2011

O/ISR/7/2011

O/ISR/22/2011

O/SAU/45/2011* (JUST)

O/SAU/5/2011* (JUST)

O/KUW/1/2011

O/KUW/2/2011

O/TUR/71/2011

O/TUR/3/2013

O/AFG/219/2010

O/AFG/221/2010

O/AFG/217/2010

O/IRN/88/2009

O/PAK/1/2010

O/PAK/2/2010

O/PAK/5/2010

O/PAK/8/2010

ANT-10

O/IRN/8/2005

TER-08 O/TUR/257/2008* (FMDI)

SAN-09 O/TUR/264/2009* (FMDI)

PUN-10 O/PAK/16/2010

BAL-09 O/IRN/18/2010

O/IRN/42/2009

O/IRN/76/2009

O/IRN/43/2009

O/IRN/84/2009

O/IRN/61/2009

O/IRN/83/2009

O/IRN/60/2009

O/IRN/31/2009

O/IRN/49/2009

O/SAU/1/2009

O/SAU/2/2009

O/IRN/77/2011

O/IRN/21/2012

O/IRN/62/2011

O/IRN 12463/2012*

O/IRN/41/2009

O/TUR/15/2013

O/TUR/36/2013

O/TUR/25/2013

O/TUR/37/2013

O/TUR/24/2013

O/TUR/29/2013

O/TUR/12/2013

O/TUR/26/2013

O/TUR/38/2013

O/TUR/31/2013

O/TUR/27/2013

O/TUR/33/2013

FAR-09

PanAsia-2

PanAsia

Irn-2001

Ind-2001

Pak-98

O/IND/53/79 (AF292107)

O/IND/R2/75* (AF204276)

O1/Manisa/TUR/69 (AY593823)

ME-SA

SEA

EA-2

EA-3

EA-4

WA

EA-1

CATHAY

ISA-1

ISA-2

EURO-SA

100

100

99

100 99

99

100

72

74

83

92

86

90

75

83

99

88

95

98

100

90

87

75

99

75

92

89

100

0.02

Adana

Adyaman ı

Afyonkarahisar

Arğı

Amasya

Ankara

Antalya

Artvin

Aydn ı

Balkesir ı

Bilecik

Bingöl

Bitlis

Bolu

Burdur

Bursa Çanakkale

Çankrıı Çorum

Denizli

Diyarbakr ı

Elâzığ

Erzincan

Erzurum

Eskiehir ş

Gaziantep

Giresun

Hakkâri

Hatay

Isparta

Mersin

Istanbul

Izmir

Kars

Kastamonu

Kayseri

Krklareli ı

Krehir ış

Kocaeli

Konya

Kütahya

Malatya

Manisa

Mardin Mula ğ

Muş

Nide ğ

Ordu Rize

Samsun

Siirt

Sinop

Sivas

Tekirdağ

Tokat

Trabzon

Tunceli

Şıanlurfa

Uak şVan

Yozgat

Aksaray

Bayburt

Karaman

Şırnak

Bartn ı

Ardahan

Idr ğı

Yalova

Karabük

Kilis

Düzce

©d-m

aps. c

om

100 km

60 mi

O

A

Asia 1

FMDV-GD

NVD

TUR/29/2013

TUR/10/2013

TUR/6/2013TUR/19/2013

TUR/37/2013

TUR/3/2013

TUR/27/2013

TUR/11/2013

TUR/20/2013

TUR/2/2013

TUR/4/2013

TUR/28/2013TUR/6/2012

TUR/30/2013

TUR/12/2013

TUR/13/2013

TUR/17/2013

TUR/33/2013

TUR/35/2013

TUR/34/2013

TUR/22/2013

TUR/23/2013

TUR/26/2013TUR/38/2013

TUR/7/2013

TUR/32/2013

TUR/18/2013

TUR/15/2013

TUR/36/2013

TUR/31/2013

TUR/25/2013

TUR/1/2013

TUR/14/2013

TUR/16/2013

TUR/7/2012

TUR/5/2013

TUR/21/2013

TUR/24/2013

TUR/8/2013

TUR/9/2013

Page 16: WRLFMD Quarterly Report April-June 2013 · WRLFMD Quarterly Report April-June 2013 2013 3 OIE/FAO Reference Laboratory Contract Report1,2 April-June 2013 Foot-and-Mouth Disease 1N.B.

WRLFMD Quarterly Report April-June 2013 2013

16

A/AFG/140/2010

A/AFG/163/2010

A/AFG/128/2010

A/AFG/125/2010

A/IRN/125/2010

A/IRN/151/2010

A/PAK/37/2010

A/IRQ/5/2010

A/IRN/24/2011

A/TUR/26/2011

A/TUR/40/2010

A/TUR/1538/2010* (FMDI)

A/IRN/4/2011

A/IRN/5/2011

A/IRN/18/2011

A/IRN/30/2011

A/IRN/20/2011

A/IRN/52/2011

A/TUR/14/2011

A/TUR/3/2011

A/TUR/37/2011

A/TUR/63/2011

A/TUR/60/2011

A/TUR/9/2011* (FMDI)

A/TUR/6/2011

A/TUR/13/2011

A/TUR/21/2011

A/TUR/24/2011

A/TUR/10/2011

A/TUR/43/2011

A/TUR/5/2011

A/TUR/23/2011

A/TUR/30/2011

A/TUR/35/2011

A/TUR/11/2011

A/TUR/18/2011

A/TUR/47/2011

A/TUR/29/2011

A/TUR/64/2011

A/TUR/16/2011

A/TUR/22/2011

A/TUR/41/2011

A/TUR/7/2011

A/TUR/3/2012

A/TUR/36/2011

A/TUR/5/2012

A/TUR/1/2013

A/TUR/10/2013

A/TUR/7/2013

A/TUR/11/2013

A/IRQ/A218/2012* (FMDI)

A/IRQ/A233/2012* (FMDI)

A/IRQ/A223/2012* (FMDI)

A/IRQ/A222/2012* (FMDI)

A/IRN/31/2012

A/IRQ/2012* (JUST)

A/TUR/6/2012

A/TUR/4/2013

A/TUR/9/2013

A/TUR/14/2013

A/TUR/30/2013

A/TUR/1233/2012* (FMDI)

A/TUR/1204/2012* (FMDI)

A/TUR/6/2013

A/TUR/16/2013

A/TUR/18/2013

A/TUR/19/2013

A/TUR/21/2013

A/TUR/35/2013

A/TUR/22/2013

A/TUR/23/2013

SIS-10

FAR-09 A/IRN/78/2009

AFG-07 A/AFG/6/2007

BAR-08 A/BAR/6/2008

HER-10 A/AFG/10/2010

SIS-12 A/IRN/15/2012

ESF-10 A/IRN/9/2010

ARD-07 A/TUR/1/2008

A/IRN/1/2005 (EF208769)

EZM-07 A/TUR/33/2008

QAZ-11 A/IRN/9/2011

Iran-05

Iran-99

Irn-96

Iran-87

A22

Thai-87

Sea-97

A15

ASIA

EURO-SA

AFRICA

98

98

96

99

90

72

92

71

99

99

99

87

93

82

97

91

99

97

80

72

74

0.02

Asia1/IRN/39/2011

Asia1/IRN/43/2011

Asia1/IRN/46/2011

Asia1/IRN/38/2011

Asia1/IRN/33/2011

Asia1/AFG/78/2011

Asia1/AFG/73/2011

Asia1/AFG/68/2011

Asia1/AFG/66/2011

Asia1/BAR/1/2011

Asia1/AFG/51/2011

Asia1/AFG/55/2011

Asia1/AFG/48/2011

Asia1/PAK/17/2011

Asia1/IRN/49/2011

Asia1/PAK/106/2010

Asia1/PAK/108/2010

Asia1/IRN/10/2012

Asia1/TUR/28/2013

Asia1/TUR/68/2011

Asia1/TUR/50/2011

Asia1/TUR/49/2011

Asia1/TUR/70/2011

Asia1/IRN F262/2012*

Asia1/IRN 5428/2012*

Asia1/IRN/74/2011

Asia1/IRN/23/2012

Asia1/IRN/75/2011

Asia1/IRN/67/2011

Asia1/IRN/3/2012

Asia1/IRN/60/2011

Asia1/IRN/58/2011

Asia1/IRN/76/2011

Asia1/IRN/56/2011

Asia1/TUR/2/2012

Asia1/TUR/66/2011

Asia1/IRN/59/2011

Asia1/TUR/65/2011

Asia1/TUR/1/2012

Asia1/TUR/69/2011

Asia1/TUR/72/2011

Asia1/TUR/76/2011

Asia1/IRN/1/2012

Asia1/TUR/67/2011

Asia1/IRN/54/2011

Asia1/TUR/73/2011

Asia1/IRN 3903/2012*

Asia1/IRN 1/2012*

Asia1/TUR/17/2013

Asia1/TUR/13/2013

Asia1/TUR/32/2013

Asia1/TUR/2/2013

Asia1/PAK/8/2008

Sindh-08

Group I Asia1/AFG/1/2001 (DQ121109)

Asia1/HKN/19/74

Asia1/YNBS/CHA/58 (AY390432)

Asia1/IND/63/72* (AY304994)

Group V Asia1/IND/18/80 (DQ121116)

Asia1/PAK/1/54 (AY593795)

Asia1/Shamir/ISR/89

Group III Asia1/IND/762/2003* (DQ101240)

Asia1/IND/14/95* (AF390678)

Group VIb Asia1/IRN/10/2004 (DQ121119)99

75

99

100

100

82

96

70

0.02

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WRLFMD Quarterly Report April-June 2013 2013

17

Vietnam WRLFMD/2013/00011

Date received: 24/04/2013

No. of samples: 9

A (ASIA/Sea-97): 5

FMDV-GD: 2

NVD: 2

A/TAI/19/2011

A/TAI/20/2011

A/TAI/10/2011

A/MAY/2/2011

A/TAI/11/2011

A/TAI/23/2011

A/TAI/8/2011

A/TAI/9/2011

A/TAI/6/2011

A/TAI/13/2011

A/MAY/19/2011

A/MAY/3/2012

A/MAY/4/2012

A/TAI/1/2012

A/TAI/2/2012

A/TAI/12/2011

A/TAI/17/2011

A/TAI/18/2011

A/TAI/15/2011

A/TAI/24/2011

A/MAY/1/2012

A/VIT/15/2012

A/VIT/16/2012

A/VIT/17/2012

A/VIT/18/2012

A/VIT/19/2012

A/VIT/20/2012

A/TAI/7/2010

A/THA 67-3/10* (TRRL)

A/THA 66-1/10* (TRRL)

A/TAI/3/2011

A/TAI/16/2011

A/TAI/1/2011

A/TAI/8/2010

A/THA 69-6/10* (TRRL)

A/MAY/17/2011

A/MAY/4/2011

A/MAY/5/2012

A/MAY/20/2011

A/TAI/9/2012

A/TAI/5/2012

A/TAI/6/2012

A/TAI/8/2012

A/TAI/4/2012

A/TAI/3/2012

A/TAI 3/12*

A/TAI 4/12*

A/TAI/7/2012

A/TAI/12/2012

A/QHXN-CHA-2013-B (LVRI)

A/GDMM-CHA-2013-S (LVRI)

A/Zabaikalsky/RUS/2013 (ARRIAH)

A/VIT/3/2013

A/VIT/1/2013

A/VIT/4/2013

A/VIT/5/2013

A/VIT/6/2013

A/TAI/7/2003 (HQ116312)

A/TAI/2/97 (EF208778)

Sea-97

Thai-87

Iran-87

A22

Iran-96

Iran-99

Iran-05

A15

ASIA

EURO-SA

AFRICA

99

99

79

77

99

99

99

96

99

88

99

99

99

99

95

91

99

92

74

78

81

72

0.02

Nam DinhNinh Bình

Thai Binh

Hai Phong

Hà Tinh

Nghe An

QuangTri

Thanh Hoa

Thua Thiên-Hue

Băc Kan

Cao Bang Hà Giang

Lang Son

Lao Cai

BN : Bac Ninh H : Ha Noi HNa : Ha Nam HTa : Hà TâyHY : Hung Yen

Yên Bái ĐienBiên

Hoa Binh

Lai Châu

Son La

Đak Lak

ĐakNông

Gia Lai

Kon Tum

Lâm Dong Ninh Thuan

Phú Yên

Quang Nam

QuangNgãi

Da Nang

Bà Ria–Vung Tàu

Binh Duong Bình Phuoc

Dong Nai

Tay Ninh

Ho Chi Minh

An Giang

Bac Liêu

Ben Tre

Cà Mau

Đong Tháp

Hau Giang

Kiên Giang

Long An

Sóc Trang

Tien Giang

Trà Vinh Vinh Long

Can Tho

H. BN.

HTa.

HNa.

HY.

Phú Tho

Bac Giang

Hai Duong

Thái Nguyên

Vinh Phúc

©d

-ma

ps.c

om

150 km

100 mi

A

FMDV-GD

NVD

VIT/1/2013

VIT/3/2013

VIT/4/2013

VIT/5/2013

VIT/6/2013

VIT/7/2013

VIT/9/2013

VIT/2/2013

VIT/8/2013

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WRLFMD Quarterly Report April-June 2013 2013

18

AFRICA

Egypt WRLFMD/2013/00012

Date received: 29/05/2013

No. of samples: 25

A (ASIA/Iran-05BAR-08

): 10

FMDV-GD: 9

NVD: 6

A/4258/IRQ/2009 (PIADC) (JN099702)

A/ISR/18/2009

A/IRN/29/2009

A/4236/IRQ/2009 (PIADC) (JN099690)

A/ISR/16/2009

A/IRN/2/2009

A/4252/IRQ/2009 (PIADC) (JN099697)

A/KUW/1/2009

A/KUW/2/2009

A/IRN/28/2009

A/IRQ/21/2009

A/IRN/22/2009

A/4256/IRQ/2009 (PIADC) (JN099700)

A/ISR/4/2009

A/IRQ/17/2009

A/4234/IRQ/2009 (PIADC) (JN099689)

A/IRN/21/2009

A/4235/IRQ/2009 (PIADC) (JN099688)

A/4255/IRQ/2009 (PIADC) (JN099699)

A/IRQ/15/2009

A/ISR/2/2009

A/IRQ/10/2009

A/ISR/3/2009

A/KUW/6/2009

A/4237/IRQ/2009 (PIADC) (JN099691)

A/4239/IRQ/2009 (PIADC) (JN099693)

A/IRQ/9/2009

A/IRQ/19/2009

A/BAR/6/2009

A/KUW/4/2009

A/IRQ/12/2009

A/KUW/3/2009

A/IRQ/11/2009

A/ISR/7/2009

A/IRN/11/2009

A/IRN/12/2009

A/4247/IRQ/2009 (PIADC) (JN099696)

A/4240/IRQ/2009 (PIADC) (JN099694)

A/4244/IRQ/2009 (PIADC) (JN099695)

A/4253/IRQ/2009 (PIADC) (JN099703)

A/ISR/5/2009

A/4257/IRQ/2009 (PIADC) (JN099701)

A/IRN/32/2009

A/KUW/5/2009

A/BAR/6/2008

A/4238/IRQ/2009 (PIADC) (JN099692)

A/4254/IRQ/2009 (PIADC) (JN099698)

A/LIB/7/2009

A/PAT/6/2009

A/ISR/1/2009

A/LIB/1/2009

A/LIB/10/2009

A/LIB/11/2009

A/LIB/117/2009

A/LIB/13/2009

A/LIB/14/2009

A/LIB/15/2009

A/LIB/16/2009

A/LIB/17/2009

A/LIB/19/2009

A/LIB/55/2009

A/LIB/6/2009

A/LIB/20/2009

A/EGY/2/2011

A/EGY/9/2011

A/IRN/18/2009

A/IRN/19/2009

A/IRN/13/2009

A/IRN/3/2009

A/IRN/5/2009

A/IRN/6/2009

A/IRN/25/2009

A/EGY/5/2013

A/EGY/6/2013

A/EGY/17/2013

A/EGY/3/2013

A/EGY/11/2013

A/EGY/12/2013

A/EGY/15/2013

A/EGY/13/2013

A/EGY/19/2013

A/EGY/14/2013

A/PAT/10/2013

A/PAT/11/2013

A/PAT/12/2013

BAR-08

AFG-07 A/AFG/6/2007

SIS-10 A/IRN/125/2010

FAR-09 A/IRN/78/2009

HER-10 A/AFG/10/2010

SIS-12 A/IRN/15/2012

ARD-07 A/TUR/1/2008

A/IRN/1/2005 (EF208769)

EZM-07 A/TUR/33/2008

QAZ-11 A/IRN/9/2011

ESF-10 A/IRN/9/2010

Iran-05

Thai-87

Sea-97

Iran-99

Iran-96

Iran-87

A22

A15

ASIA

EURO-SA

AFRICA

98

99

96

99

92

89

100

100

70

96

94

80

87

72

89

88

0.02

Monufia North Sinai

Port Said

Sharqia

Matrouh

Minya

Qalyubia

South Sinai

Suez

Luxor

New Valley

Qena

Red Sea

Sohag

Alexandria

Aswan

Asyut

Beheira

Beni Suef

Cairo

Dakahlia Damietta

Faiyum

Gharbia

Giza

Ismailia

Kafr el-Sheikh

200 km

100 mi

© Daniel Dalet / d-maps.com

A

FMDV-GD

NVD

EGY/2/2013

EGY/5/2013

EGY/11/2013

EGY/12/2013

EGY/4/2013

EGY/8/2013

EGY/20/2013

EGY/1/2013

EGY/7/2013

EGY/18/2013

EGY/39/2012

EGY/37/2012

EGY/10/2013EGY/6/2013

EGY/9/2013EGY/19/2013

EGY/13/2013

EGY/3/2013

EGY/14/2013

EGY/38/2012

EGY/40/2012

EGY/41/2012

EGY/16/2013

EGY/17/2013

EGY/15/2013

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WRLFMD Quarterly Report April-June 2013 2013

19

Ethiopia WRLFMD/2013/00007

Date received: 18/04/2013

No. of samples: 9

O (EA-3): 4

O (EA-4): 1

FMDV-GD: 4

O/ETH/9/2011

O/ETH/10/2011

O/ETH/17/2012

O/ETH/15/2012

O/ETH/18/2012

O/ETH/19/2012

O/ETH/16/2012

O/ETH/11/2012

O/ETH/11/2011

O/ETH/12/2011

O/ETH/12/2012

O/ETH/46/2011

O/ETH/3/2011

O/ETH/4/2011

O/ETH/5/2011

O/ETH/42/2011

O/ETH/45/2011

O/ETH/38/2011

O/ETH/13/2011

O/ETH/18/2011

O/ETH/45/2009

O/ETH/7/2010

O/ETH/8/2010

O/ETH/2/2011

O/ETH/32/2011

O/ETH/1/2011

O/ETH/7/2011

O/ETH/29/2011

O/ETH/34/2011

O/ETH/48/2011

O/ETH/50/2011

O/ETH/49/2011

O/ETH/51/2011

O/ETH/63/2005 (FJ798122)

O/ETH/64/2005 (FJ798123)

O/ETH/65/2005 (FJ798124)

O/ETH/54/2005 (FJ798118)

O/ETH/57/2005 (FJ798121)

O/ETH/66/2005 (FJ798125)

O/ETH/67/2005 (FJ798126)

O/ETH/55/2005 (FJ798119)

O/ETH/56/2005 (FJ798120)

O/ETH/1/2005 (FJ798106)

O/ETH/3/2004 (FJ798109)

O/YEM/70/2004

O/ETH/38/2005 (2003/4)(FJ798108)

O/ETH/54/2006 (FJ798117)

O/ETH/1/2007 (FJ798137)

O/ETH/26/2007 (FJ798138)

O/ETH/27/2007 (FJ798139)

O/ETH/28/2007 (FJ798140)

O/ETH/2/2006 (FJ798127)

O/SUD/2/86 (DQ165075)

EA-3

WA

EA-1

EA-2 O/ETH/4/2013

O/KEN/100/2010 (KF135281)

O/ETH/59/2005 (FJ798142)

O/ETH/60/2005 (FJ798143)

O/ETH/58/2005 (FJ798141)

O/UGA/9/98 (HM211072)

O/UGA/15/98 (HM211074)

O/UGA/10/98 (HM211073)

O/U97/99* (HM756604)

O/UGA/17/98 (HM211075)

O/UGA/17/98 (EU919245)

EA-4

ME-SA

SEA

CATHAY

ISA-1

ISA-2

EURO-SA

100

77

100

85

100

100

100

100

87

100

78

82

100

98

99

94

96

76

86

85

100

100

100

100

100

99

96

81

99

95

7697

70

0.02

Addis Ababa

Afar

Amhara

Benishangul-Gumuz

Dire Dawa

Gambela

Harari

OromiaSomali

Southern Nations

Tigray

O

FMDV-GD

NVD

ETH/65/2011

ETH/16/2012

ETH/17/2012

ETH/18/2012

ETH/19/2012

ETH/1/2013

ETH/2/2013

ETH/3/2013

ETH/4/2013

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WRLFMD Quarterly Report April-June 2013 2013

20

Vaccine matching

Nine FMDV type O isolates (See Table C, Type O for details) from Bhutan, Egypt, Hong Kong (Special

Administrative Region of the People's Republic of China), Iran, Pakistan, Taiwan (ROC) and The United Arab

Emirates collected in 2012 and 2013 were analysed antigenically by the two dimensional virus neutralisation

test (2dmVNT). All isolates matched with O 4625 and most matched with O TUR 5/2009 except the isolates

from Hong Kong and Taiwan. Isolates from Egypt, Iran and Pakistan gave a good match with O Manisa (Table

C).

Nineteen FMDV type A viruses (See Table C, Type A for details) from Iran, Egypt, Palestine, Tanzania, Turkey

and Vietnam collected during 2012 and 2013 were analysed antigenically by the two dimensional virus

neutralisation test (2dmVNT). Isolates from Tanzania showed a good match with A IRN 2005, A TUR 06 and

A22 IRQ; All isolates from Turkey and Vietnam and one virus each from Iran and Palestine showed an

antigenic match with A TUR 06, respectively. Isolates from Egypt showed no match with any vaccine strain

tested (Table C).

Seven FMDV type Asia 1 isolates (See Table C, Type Asia 1 for details) from Pakistan and Turkey collected in

2012 and 2013 were analysed antigenically by the two dimensional virus neutralisation test (2dmVNT). Two out

five isolates from Pakistan showed a good match with Asia 1 emergency vaccine (Table C).

By 2dmVNT, four FMDV type SAT 1 virus (see table C, Type SAT 1 for details) from Zambia and Tanzania

collected from 2012 were all antigenically matched with SAT 1 RHO vaccine strain (Table C).

Four FMDV type SAT 2 virus (see table C, Type SAT 2 for details) from Botswana, Zambia and Tanzania

collected from 2012 were antigenically analysed by 2dmVNT. All viruses from Botswana and Tanzania

matched with both SAT 2 Eritrea and SAT 2 ZIM vaccine strains, however, the SAT 2 virus collected from

Zambia showed no match with either of the tested vaccine strains (Table C).

Annex 1. TABLE A: Clinical sample diagnostics made by the WRLFMD® between April-June 2013

Country WRL for FMD Animal

Date of

Collection Results

Sample

Identification

VI/ELISA RT-PCR Final report

BHUTAN BHU 1/2013 BOVINE 06-Jun-13 O POS O

CAMBODIA CAM 1/2012 CATTLE 24-Sep-12 O POS O

CAM 2/2012 CATTLE 24-Sep-12 O POS O

EGYPT EGY 37/2012 CATTLE 28-Aug-12 NOT TESTED POS FMDV GD

EGY 38/2012 CATTLE 03-Dec-12 NOT TESTED POS FMDV GD

EGY 39/2012 CATTLE 19-Dec-12 NOT TESTED NEG NVD

EGY 40/2012 CATTLE 24-Dec-12 NOT TESTED POS FMDV GD

EGY 41/2012 CATTLE 24-Dec-12 NOT TESTED NEG NVD

EGY 1/2013 CATTLE 03-Jan-13 NOT TESTED POS FMDV GD

EGY 2/2013 CATTLE 08-Jan-13 NOT TESTED POS FMDV GD

EGY 3/2013 CATTLE 08-Jan-13 A POS A

EGY 4/2013 CATTLE 30-Jan-13 NOT TESTED POS FMDV GD

EGY 5/2013 CATTLE 31-Mar-13 A POS A

EGY 6/2013 BUFFALO 04-Feb-13 A POS A

EGY 7/2013 CATTLE 06-Feb-13 NOT TESTED POS FMDV GD

EGY 8/2013 BUFFALO 10-Feb-13 NOT TESTED POS FMDV GD

EGY 9/2013 BUFFALO 11-Feb-13 NOT TESTED POS FMDV GD

EGY 10/2013 CATTLE 16-Feb-13 NOT TESTED NEG NVD

EGY 11/2013 CATTLE 23-Feb-13 A POS A

EGY 12/2013 BUFFALO 24-Feb-13 A POS A

EGY 13/2013 CATTLE 11-Mar-13 A POS A

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WRLFMD Quarterly Report April-June 2013 2013

21

EGY 14/2013 CATTLE 19-Mar-13 A POS A

EGY 15/2013 CATTLE 20-Mar-13 A POS A

EGY 16/2013 CATTLE 25-Mar-13 NOT TESTED NEG NVD

EGY 17/2013 CATTLE 07-Apr-13 A POS A

EGY 18/2013 CATTLE 08-Apr-13 NOT TESTED NEG NVD

EGY 19/2013 CATTLE 09-Apr-13 A POS A

EGY 20/2013 CATTLE 09-Apr-13 NOT TESTED NEG NVD

ETHIOPIA ETH 65/2011 BOVINE 17-Dec-11 NEG POS FMDV GD

ETH 16/2012 BOVINE 14-Aug-12 O POS O

ETH 17/2012 BOVINE 14-Aug-12 O POS O

ETH 18/2012 BOVINE 19-Nov-12 O POS O

ETH 19/2012 BOVINE 19-Nov-12 O POS O

ETH 1/2013 BOVINE 06-Feb-13 NEG POS FMDV GD

ETH 2/2013 BOVINE 06-Feb-13 NEG POS FMDV GD

ETH 3/2013 BOVINE 16-Mar-13 NEG POS FMDV GD

ETH 4/2013 BOVINE 16-Mar-13 O POS O

HONG KONG,

SAR OF PRC HKN 1/2013 PIG 02-Apr-13 O POS O

LAOS LAO 1/2012 CATTLE 28-Dec-12 O POS O

LAO 2/2012 CATTLE 28-Dec-12 O POS O

LAO 3/2012 CATTLE 28-Dec-12 O POS O

LAO 4/2012 CATTLE 28-Dec-12 O POS O

LAO 5/2012 CATTLE 28-Dec-12 O POS O

PALESTINIAN

AUTONOMOUS

TERRITORIES

PAT 10/2013 CALVES 02-Apr-13 A POS A

PAT 11/2013 CALVES 02-Apr-13 A POS A

PAT 12/2013 CALVES 02-Apr-13 A POS A

THAILAND TAI 13/2012 CATTLE 15-Aug-12 A POS A

TAI 14/2012 CATTLE 03-Oct-12 O POS O

TAI 15/2012 CATTLE 03-Oct-12 A POS A

TAI 16/2012 CATTLE 12-Oct-12 A POS A

TAI 17/2012 CATTLE 12-Oct-12 O POS O

TAI 18/2012 CATTLE 29-Oct-12 O POS O

TAI 19/2012 CATTLE 23-Nov-12 O POS O

TAI 20/2012 CATTLE 27-Nov-12 NOT TESTED POS FMDV GD

TAI 1/2013 CATTLE 04-Jan-13 O POS O

TAI 2/2013 CATTLE 07-Feb-13 A POS A

TAI 3/2013 CATTLE 13-Feb-13 A POS A

TAI 4/2013 CATTLE 15-Feb-13 A POS A

TAI 5/2013 CATTLE 27-Feb-13 A NEG A

TURKEY TUR 6/2012 CATTLE 28-Dec-12 A POS A

TUR 7/2012 SHEEP 28-Dec-12 NEG NEG NVD

TUR 1/2013 CATTLE 01-Jan-13 A POS A

TUR 2/2013 CATTLE 02-Jan-13 ASIA-1 POS ASIA-1

TUR 3/2013 CATTLE 04-Jan-13 O POS O

TUR 4/2013 CATTLE 05-Jan-13 A POS A

TUR 5/2013 SHEEP 05-Jan-13 NEG NEG NVD

TUR 6/2013 CATTLE 08-Jan-13 A POS A

TUR 7/2013 CATTLE 13-Jan-13 A POS A

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WRLFMD Quarterly Report April-June 2013 2013

22

TUR 8/2013 SHEEP 13-Jan-13 NEG NEG NVD

TUR 9/2013 CATTLE 14-Jan-13 A POS A

TUR 10/2013 CATTLE 17-Jan-13 A POS A

TUR 11/2013 CATTLE 02-Feb-13 A POS A

TUR 12/2013 CATTLE 09-Feb-13 O POS O

TUR 13/2013 CATTLE 09-Feb-13 ASIA-1 POS ASIA-1

TUR 14/2013 CATTLE 19-Feb-13 A POS A

TUR 15/2013 CATTLE 21-Feb-13 O POS O

TUR 16/2013 CATTLE 21-Feb-13 A POS A

TUR 17/2013 CATTLE 23-Feb-13 ASIA-1 POS ASIA-1

TUR 18/2013 CATTLE 24-Feb-13 A POS A

TUR 19/2013 CATTLE 25-Feb-13 A POS A

TUR 20/2013 GOAT 25-Feb-13 NEG NEG NVD

TUR 21/2013 CATTLE 25-Feb-13 A POS A

TUR 22/2013 CATTLE 25-Feb-13 A POS A

TUR 23/2013 CATTLE 25-Feb-13 A POS A

TUR 24/2013 CATTLE 26-Feb-13 O POS O

TUR 25/2013 CATTLE 02-Mar-13 O POS O

TUR 26/2013 CATTLE 06-Mar-13 O POS O

TUR 27/2013 CATTLE 08-Mar-13 O POS O

TUR 28/2013 CATTLE 09-Mar-13 ASIA-1 POS ASIA-1

TUR 29/2013 CATTLE 10-Mar-13 O POS O

TUR 30/2013 CATTLE 11-Mar-13 A POS A

TUR 31/2013 CATTLE 12-Mar-13 O POS O

TUR 32/2013 CATTLE 12-Mar-13 O POS O

TUR 33/2013 CATTLE 12-Mar-13 O POS O

TUR 34/2013 CATTLE 13-Mar-13 NOT TESTED POS FMDV GD

TUR 35/2013 CATTLE 16-Mar-13 A POS A

TUR 36/2013 CATTLE 16-Mar-13 O POS O

TUR 37/2013 CATTLE 17-Mar-13 O POS O

TUR 38/2013 CATTLE 19-Mar-13 O POS O

VIETNAM VIT 1/2013 CATTLE 16-Mar-13 A POS A

VIT 2/2013 CATTLE 16-Mar-13 NVD

NOT

TESTED NVD

VIT 3/2013 CATTLE 28-Mar-13 A POS A

VIT 4/2013 CATTLE 16-Mar-13 A POS A

VIT 5/2013 BUFFALO 02-Apr-13 A POS A

VIT 6/2013 BUFFALO 02-Apr-13 A POS A

VIT 7/2013 CATTLE 16-Mar-13 NVD POS FMDV GD

VIT 8/2013 BUFFALO 02-Apr-13 NVD NEG NVD

VIT 9/2013 BUFFALO 02-Apr-13 NVD POS FMDV GD

TOTAL: 108

FMD(V) Foot-and-mouth disease (virus)

FMDV GD Genome detected

VI/ELISA FMDV serotype identified following virus isolation in cell culture and antigen ELISA

RT-PCR Reverse transcription polymerase chain reaction on epithelial suspension for FMD (or

SVD) viral genome

NVD No foot-and-mouth disease, swine vesicular disease or vesicular stomatitis virus

detected

NT Not tested

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WRLFMD Quarterly Report April-June 2013 2013

23

TABLE B: Summary of samples collected and received to The Pirbright Institute (April-June 2013)

Country No. of Virus isolation in cell culture/ELISA

RT-PCR for FMD

(or SVD)

samples FMD virus serotypes NVD

virus (where

appropriate)

O A C SAT 1 SAT 2 SAT 3 Asia 1 Positive Negative

BHUTAN 1 1 - - - - - - - 1 -

CAMBODIA 2 2 - - - - - - - 2 -

EGYPT 25 - 10 - - - - - 15 19 6

ETHIOPIA 9 5 - - - - - - 4 9 -

HONG KONG,

SAR OF PRC

1 1 - - - - - - - 1 -

LAOS 5 5 - - - - - - - 5 -

PALESTINIAN

AUTONOMOUS

TERRITORIES

3 - 3 - - - - - - 3 -

TURKEY 40 14 17 - - - - 4 5 36 4

THAILAND 13 5 7 - - - - - 1 12 1

VIETNAM 9 - 5 - - - - - 4 7 1

TOTAL 108 33 42 - - - - 4 29 95 12

VI/ELISA FMD (or SVD) virus serotype identified following virus isolation in cell culture and antigen

detection ELISA

FMD foot-and-mouth disease

SVD swine vesicular disease

NVD no FMD, SVD or vesicular stomatitis virus detected

NT not tested

RT-PCR reverse transcription polymerase chain reaction for FMD (or SVD) viral genome

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TABLE C: Antigenic characterisation of FMD field isolates by matching with vaccine strains by 2dmVNT

from 1st April to 30

th June 2012

Type O:

Vaccine matching studies for serotype O FMDV by VNT-WRLFMD®

WRL SAMPLE

REF SEROTYPE O 3039 O 4625 O Campos O Manisa

O Skr 7/10

O Taw98 O Tur 5/09

BHU 12/2012

O M M N N M

EGY 25/2012

O M M M

HKN 1/2013

O N M N N N N N

IRN 11/2013

O M M M

IRN 36/2012

O M M M

PAK 12/2012

O M M M

PAK 17/2012

O

M M M

TAW 01/2012

O M M

N M M M

UAE 1/2013

O M N M

Type A:

Vaccine matching studies for serotype A FMDV by VNT-WRLFMD®

WRL SAMPLE

REF

SEROTYPE

A Eri 98 A IRN

87 A IRN

96 A Iran 2005

A TUR 06

A22 IRQ

A MAY 97

A MAY 97*

A SAU 95

SAU 41/91

IRN 07/2013

A N N N N

IRN 24/2012

A N N N N

IRN 33/2012

A N N M N

TAN 1/2013

A N M M M

TAN 3/2013

A M M M M

TAN 56/2012

A N M M M

TAN 73/2012

A N N M N

VIT 5/2013

A N M M N N N N

VIT 6/2013

A N M M N N N N

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WRLFMD Quarterly Report April-June 2013 2013

25

PAT 10/2013

A N M N

N

PAT 11/2013

A N N N

N

PAT 12/2013

A N N N

N

EGY 3/2013

A N N N N N N N N

EGY 13/2013

A N N N N N N N N

EGY 17/2013

A N N N N

EGY 19/2013

A N N N N

TUR 14/2013

A N M N

TUR 21/2013

A N M N

TUR 9/2013

A N M N

TYPE Asia 1

Vaccine matching studies for serotype Asia 1 FMDV by VNT-WRLFMD®

SAMPLE REF

SEROTYPE Asia1 IND 8/79 Asia1 Shamir Asia1 Shamir

6pd50

PAK 10/2012

ASIA1 N N N

PAK 29/2012

ASIA1 N N M

PAK 30/2012

ASIA1 N N N

PAK 35/2012

ASIA1 M N N

PAK 37/2012

ASIA1 N N M

TUR 2/2013 ASIA1 N N N

TUR 13/2013

ASIA1 N N N

TYPE SAT 1:

Vaccine matching studies for serotype SAT 1 FMDV by VNT-WRLFMD®

SAMPLE REF SEROTYPE SAT1 RHO

ZAM 06/2012 SAT1 M

ZAM 08/2012 SAT1 M

TAN 49/2012 SAT1 M

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TAN 50/2012 SAT1 M

TYPE SAT 2:

Vaccine matching studies for serotype SAT 2 FMDV by VNT-WRLFMD®

SAMPLE REF SEROTYPE SAT2 Eritrea SAT2 ZIM 7/83

BOT 17/2012 SAT2 M M

BOT 20/2012 SAT2 M M

ZAM 01/2012 SAT2 N N

TAN 64/2012 SAT2 M M

Results Descriptor:

Results Descriptor:

M : = Vaccine Match- r1 = > 0.3. Suggests that there is a close relationship between field isolate and vaccine

strain. A potent vaccine containing the vaccine strain is likely to confer protection.

N : = No Vaccine Match - r1 = < 0.3. Suggests that the field isolate is so different from the vaccine strain that

the vaccine is unlikely to protect

= Not tested against this vaccine

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Annex 2. Recent FMD Publications cited by PubMed

1. Zhou JH, Zhang J, Sun DJ, Ma Q, Ma B, Pejsak Z, Chen HT, Ma LN, Ding YZ, Liu YS. Potential roles of

synonymous codon usage and tRNA concentration in hosts on the two initiation regions of foot-and-mouth

disease virus RNA. Virus Res. 2013 Jun 25. doi:pii: S0168-1702(13)00209-8.

10.1016/j.virusres.2013.06.006. [Epub ahead of print] PubMed PMID: 23806792.

2. Su C, Duan X, Zheng J, Liang L, Wang F, Guo L. IFN-α as an Adjuvant for Adenovirus-Vectored FMDV

Subunit Vaccine through Improving the Generation of T Follicular Helper Cells. PLoS One. 2013 Jun

18;8(6):e66134. Print 2013. PubMed PMID: 23823532; PubMed Central PMCID: PMC3688841.

3. Gullberg M, Muszynski B, Organtini LJ, Ashley RE, Hafenstein SL, Belsham GJ, Polacek C. Assembly and

characterization of foot-and-mouth disease virus empty capsid particles expressed within mammalian cells.

J Gen Virol. 2013 Jun 5. [Epub ahead of print] PubMed PMID: 23740480.

4. Nandi SP, Rahman MZ, Momtaz S, Sultana M, Hossain MA. Emergence and Distribution of Foot-and-

Mouth Disease Virus Serotype A and O in Bangladesh. Transbound Emerg Dis. 2013 Jun 4. doi:

10.1111/tbed.12113. [Epub ahead of print] PubMed PMID: 23734722.

5. Pedersen LE, Harndahl M, Nielsen M, Patch JR, Jungersen G, Buus S, Golde WT. Identification of peptides

from foot-and-mouth disease virus structural proteins bound by class I swine leukocyte antigen (SLA)

alleles, SLA-1*0401 and SLA-2*0401. Anim Genet. 2013 Jun;44(3):251-8. doi: 10.1111/j.1365-

2052.2012.02400.x. Epub 2012 Sep 18. PubMed PMID: 22984928.

6. Rai DK, Schafer EA, Singh K, McIntosh MA, Sarafianos SG, Rieder E. Repeated exposure to 5D9, an

inhibitor of 3D polymerase, effectively limits the replication of foot-and-mouth disease virus in host cells.

Antiviral Res. 2013 Jun;98(3):380-5. doi: 10.1016/j.antiviral.2013.03.022. Epub 2013 Apr 8. PubMed

PMID: 23578728.

7. Zhou JH, You YN, Chen HT, Zhang J, Ma LN, Ding YZ, Pejsak Z, Liu YS. The effects of the synonymous

codon usage and tRNA abundance on protein folding of the 3C protease of foot-and-mouth disease virus.

Infect Genet Evol. 2013 Jun;16:270-4. doi: 10.1016/j.meegid.2013.02.017. Epub 2013 Mar 14. PubMed

PMID:23499709.

8. LaRocco M, Krug PW, Kramer E, Ahmed Z, Pacheco JM, Duque H, Baxt B, Rodriguez LL. A continuous

bovine kidney cell line constitutively expressing bovine αvβ6 integrin has increased susceptibility to foot-

and-mouth disease virus. J Clin Microbiol. 2013 Jun;51(6):1714-20. doi: 10.1128/JCM.03370-12. Epub

2013 Mar 20.PubMed PMID: 23515553.

9. Polacek C, Gullberg M, Li J, Belsham GJ. Low levels of foot-and-mouth disease virus 3C protease

expression are required to achieve optimal capsid protein expression and processing in mammalian cells. J

Gen Virol. 2013 Jun;94(Pt 6):1249-58. doi: 10.1099/vir.0.050492-0. Epub 2013 Jan 30. PubMed PMID:

23364188.

10. Gladue DP, O'Donnell V, Baker-Branstetter R, Holinka LG, Pacheco JM, Fernández Sainz I, Lu Z,

Ambroggio X, Rodriguez L, Borca MV. Foot-and-Mouth Disease Virus Modulates Cellular Vimentin for

Virus Survival. J Virol. 2013 Jun;87(12):6794-803. doi: 10.1128/JVI.00448-13. Epub 2013 Apr 10.

PubMed PMID:23576498; PubMed Central PMCID: PMC3676138.

11. Zhou G, Wang H, Wang F, Yu L. Recombinant adenovirus expressing type Asia1foot-and-mouth disease

virus capsid proteins induces protective immunity against homologous virus challenge in mice. Res Vet Sci.

2013 Jun;94(3):796-802. doi:10.1016/j.rvsc.2012.12.004. Epub 2012 Dec 23. PubMed PMID: 23267820.

12. Legesse Y, Asfaw Y, Sahle M, Ayelet G, Jenberie S, Negussie H. First confirmation of foot and mouth

disease virus serotype SAT-1 in cattle and small ruminants in Ethiopia in 2007/08. Trop Anim Health Prod.

2013 Jun;45(5):1265-7.doi: 10.1007/s11250-012-0339-2. Epub 2012 Dec 19. PubMed PMID: 23250672.

13. Quattrocchi V, Molinari P, Langellotti C, Gnazzo V, Taboga O, Zamorano P. Co-inoculation of baculovirus

and FMDV vaccine in mice, elicits very early protection against foot and mouth disease virus without

interfering with long lasting immunity. Vaccine. 2013 May 31;31(24):2713-8. doi: 10.1016/ j.vaccine.

2013.03.067. Epub 2013 Apr 12. PubMed PMID: 23588086.

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28

14. Yin S, Yang S, Shang Y, Sun S, Zhou G, Jin Y, Tian H, Wu J, Liu X. Characterization of Asia 1 sdAb from

Camels Bactrianus (C. bactrianus) and Conjugation with Quantum Dots for Imaging FMDV in BHK-21

Cells. PLoS One. 2013 May 30;8(5):e63500. doi: 10.1371/journal.pone.0063500. Print 2013. PubMed

PMID: 23737944; PubMed Central PMCID: PMC3667858.

15. Zhu JJ, Arzt J, Puckette MC, Smoliga GR, Pacheco JM, Rodriguez LL. Mechanisms of Foot-and-Mouth

Disease Virus Tropism Inferred from Differential Tissue Gene Expression. PLoS One. 2013 May

28;8(5):e64119. doi: 10.1371/journal.pone.0064119. Print 2013. PubMed PMID: 23724025; PubMed

Central PMCID: PMC3665847.

16. Guo C, Zhang C, Zheng H, Huang Y. Recombinant adenovirus expression of FMDV P1-2A and 3C protein

and its immune response in mice. Res Vet Sci. 2013 May 27. doi:pii: S0034-5288(13)00180-X.

10.1016/j.rvsc.2013.05.001. [Epub ahead of print] PubMed PMID: 23722010.

17. Chen HT, Liu YS. Immunity of Foot-and-Mouth Disease Serotype Asia 1 by Sublingual Vaccination. PLoS

One. 2013 May 22;8(5):e63839. doi: 10.1371/journal.pone.0063839. Print 2013. PubMed PMID:

23717497; PubMed Central PMCID: PMC3661678.

18. Maree FF, Blignaut B, de Beer TA, Rieder E. Analysis of SAT Type Foot-And-Mouth Disease Virus

Capsid Proteins and the Identification of Putative Amino Acid Residues Affecting Virus Stability. PLoS

One. 2013 May 22;8(5):e61612. doi: 10.1371/journal.pone.0061612. Print 2013. PubMed PMID:

23717387; PubMed Central PMCID: PMC3661562.

19. Li X, Wang J, Liu J, Li Z, Wang Y, Xue Y, Li X, Cao H, Zheng SJ. Engagement of soluble resistance-

related calcium binding protein (sorcin) with foot-and-mouth disease virus (FMDV) VP1 inhibits type I

interferon response in cells. Vet Microbiol. 2013 May 21. doi:pii: S0378-1135(13)00245-9.

10.1016/j.vetmic.2013.04.028. [Epub ahead of print] PubMed PMID: 23764275.

20. Wang H, Liu X, Wu J, Wu G, Yu L, He C, Yang H, Xie W, Xia X, He H. Bovine fetal epithelium cells

expressing shRNA targeting viral VP1 gene resisted against foot-and-mouth disease virus. Virology. 2013

May 10;439(2):115-21. doi: 10.1016/j.virol.2013.02.003. Epub 2013 Mar 6. PubMed PMID: 23481248.

21. Borley DW, Mahapatra M, Paton DJ, Esnouf RM, Stuart DI, Fry EE. Evaluation and use of in-silico

structure-based epitope prediction with foot-and-mouth disease virus. PLoS One. 2013 May 7;8(5):e61122.

doi: 10.1371/journal.pone.0061122. Print 2013. PubMed PMID: 23667434; PubMed Central PMCID:

PMC3646828.

22. Subramaniam S, Sanyal A, Mohapatra JK, Sharma GK, Biswal JK, Ranjan R, Rout M, Das B, Bisht P,

Mathapati BS, Dash BB, Pattnaik B. Emergence of a novel lineage genetically divergent from the

predominant Ind2001 lineage of serotype O foot-and-mouth disease virus in India. Infect Genet Evol. 2013

May 3;18C:1-7. doi: 10.1016/j.meegid.2013.04.027. [Epub ahead of print] PubMed PMID: 23643555.

23. Fernández N, Buddrus L, Piñeiro D, Martínez-Salas E. Evolutionary conserved motifs constrain the RNA

structure organization of picornavirus IRES. FEBS Lett. 2013 May 2;587(9):1353-8. doi:

10.1016/j.febslet.2013.03.005. Epub 2013 Mar 15.PubMed PMID: 23507141.

24. Basagoudanavar SH, Hosamani M, Tamil Selvan RP, Sreenivasa BP, Saravanan P, Chandrasekhar Sagar

BK, Venkataramanan R. Development of a liquid-phase blocking ELISA based on foot-and-mouth disease

virus empty capsid antigen for seromonitoring vaccinated animals. Arch Virol. 2013 May;158(5):993-1001.

doi:10.1007/s00705-012-1567-5. Epub 2012 Dec 16. PubMed PMID: 23242775.

25. Toka FN, Golde WT. Cell mediated innate responses of cattle and swine are diverse during foot-and-mouth

disease virus (FMDV) infection: A unique landscape of innate immunity. Immunol Lett. 2013

May;152(2):135-43. doi: 10.1016/j.imlet.2013.05.007. Epub 2013 May 30. PubMed PMID: 23727070.

26. Diaz-San Segundo F, Dias CC, Moraes MP, Weiss M, Perez-Martin E, Owens G, Custer M, Kamrud K, de

los Santos T, Grubman MJ. Venezuelan equine encephalitis replicon particles can induce rapid protection

against foot-and-mouth disease virus. J Virol. 2013 May;87(10):5447-60. doi: 10.1128/JVI.03462-12. Epub

2013 Mar 6. PubMed PMID: 23468490; PubMed Central PMCID: PMC3648198.

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27. Wang G, Shang Y, Wang Y, Tian H, Liu X. Comparison of a loop-mediated isothermal amplification for

orf virus with quantitative real-time PCR. Virol J. 2013 May 1;10:138. doi: 10.1186/1743-422X-10-138.

PubMed PMID: 23634981; PubMed Central PMCID: PMC3651318.

28. Du P, Shang Y, Yin S, Zhang K, Wang G, Lv Z, Yang S, Wu J, Jin Y, Chen Y, Liu Y, Tian H, Liu X.

Comparative analysis of cloned cDNAs encoding Chinese yellow cattle and Gansu black swine integrin

receptors for foot-and-mouth disease virus. Arch Virol. 2013 Apr 26. [Epub ahead of print] PubMed PMID:

23620003.

29. Alejo DM, Moraes MP, Liao X, Dias CC, Tulman ER, Diaz-San Segundo F, Rood D, Grubman MJ, Silbart

LK. An adenovirus vectored mucosal adjuvant augments protection of mice immunized intranasally with an

adenovirus-vectored foot-and-mouth disease virus subunit vaccine. Vaccine. 2013 Apr 26;31(18):2302-9.

doi: 10.1016/j.vaccine.2013.02.060. Epub 2013 Mar 13. PubMed PMID: 23499593.

30. Yang M, Goolia M, Xu W, Bittner H, Clavijo A. Development of a quick and simple detection

methodology for foot-and-mouth disease virus serotypes O, A and Asia 1 using a generic RapidAssay

Device. Virol J. 2013 Apr 22;10:125. doi: 10.1186/1743-422X-10-125. PubMed PMID: 23607273; PubMed

Central PMCID:PMC3646701.

31. Zhang Y, Sun Y, Yang F, Guo J, He J, Wu Q, Cao W, Lv L, Zheng H, Zhang Z. Induction of partial

protection against foot and mouth disease virus in guinea pigs by neutralization with the integrin β6-1

subunit. Viruses. 2013 Apr 19;5(4):1114-30. doi: 10.3390/v5041114. PubMed PMID: 23604096.

32. Tajdini F, Amini MA, Mokarram AR, Taghizadeh M, Azimi SM. Foot and Mouth Disease virus-loaded

fungal chitosan nanoparticles for intranasal administration: impact of formulation on physicochemical and

immunological characteristics. Pharm Dev Technol. 2013 Apr 16. [Epub ahead of print] PubMed PMID:

23590209.

33. Dar PA, Suryanaryana VS, Nagarajan G, Reddy GR, Dechamma HJ, Kondabattula G. DNA prime-protein

boost strategy with replicase-based DNA vaccine against foot-and-mouth disease in bovine calves. Vet

Microbiol. 2013 Apr 12;163(1-2):62-70. doi: 10.1016/j.vetmic.2012.12.017. Epub 2012 Dec 25. PubMed

PMID: 23305616.

34. Ma YB, Hao CX, Chang HY. Nucleotide mismatches of foot-and-mouth disease virus during replication.

Genet Mol Res. 2013 Apr 2;12(2):1022-7. doi: 10.4238/2013.April.2.18. PubMed PMID: 23613248.

35. Park JH, Lee KN, Ko YJ, Kim SM, Lee HS, Shin YK, Sohn HJ, Park JY, Yeh JY, Lee YH, Kim MJ, Joo

YS, Yoon H, Yoon SS, Cho IS, Kim B. Control of foot-and-mouth disease during 2010-2011 epidemic,

South Korea. Emerg Infect Dis. 2013 Apr;19(4):655-9. doi: 10.3201/eid1904.121320. PubMed PMID:

23632094; PubMed Central PMCID: PMC3647416.

36. Chu JQ, Lee YJ, Park JN, Kim SM, Lee KN, Ko YJ, Lee HS, Cho IS, Kim B, Park JH. Construction of a

bovine enterovirus-based vector expressing a foot-and-mouth disease virus epitope. J Virol Methods. 2013

Apr;189(1):101-4. doi: 10.1016/j.jviromet.2013.01.010. Epub 2013 Feb 4. PubMed PMID: 23391822.

37. Xu L, Hurtle W, Rowland JM, Casteran KA, Bucko SM, Grau FR, Valdazo-González B, Knowles NJ,

King DP, Beckham TR, McIntosh MT. Development of a universal RT-PCR for amplifying and sequencing

the leader and capsid-coding region of foot-and-mouth disease virus. J Virol Methods. 2013 Apr;189(1):70-

6. doi:10.1016/j.jviromet.2013.01.009. Epub 2013 Feb 1. PubMed PMID: 23380590.

38. Park JH, Lee KN, Ko YJ, Kim SM, Lee HS, Park JY, Yeh JY, Kim MJ, Lee YH, Sohn HJ, Cho IS, Kim B.

Diagnosis and control measures of the 2010 outbreak of foot-and-mouth disease A type in the Republic of

Korea. Transbound Emerg Dis. 2013 Apr;60(2):188-92. doi: 10.1111/j.1865-1682.2012.01333.x. Epub

2012 May 27. PubMed PMID: 22630568.

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High Priority O Manisa *

O PanAsia-2

O BFS or Campos

A24 Cruzeiro

Asia 1 Shamir

A Iran-05

A22 Iraq

SAT 2 Saudi Arabia (or equivalent i.e. SAT 2 Eritrea)

*can be supplemented with O 4625 or O 3039

A15 Bangkok related strain

A87 Argentina related strain

C Noville

SAT 2 Kenya

SAT 1 Kenya

SAT 3 Zimbabwe

A Kenya (not in order of importance)

Medium Priority

Low Priority

A Eritrea

A Iran ’96

SAT 2 Zimbabwe

A Iran 87 or A Saudi Arabia 23/86 (or equivalent)

SAT 1 South Africa

A Malaysia 97 (or Thai equivalent such as A/NPT/TAI/86)

A Argentina 2001

O Taiwan 97 (pig-adapted strain or Philippine equivalent)

A Iran ’99

Annex 3. RECOMMENDATIONS FROM WRLFMD® ON FMD VIRUS STRAINS TO BE INCLUDED IN FMDV ANTIGEN BANKS – June 2013


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