Book of modules - NUI Galway€¦ · Book of modules MV1 - MV1 Master of ... Advanced Technologies...

Book of modulesMV1 - MV1 Master of Science (Biomedical Science)

17 modules listed.

13:42PM Thursday, 24 August 2017

Generated with Akari Document

Course Stream MV1 - MV1 Master of Science (Biomedical Science) · 24 August 2017

APPROVED

MV1 Master of Science (Biomedical Science)Awards

No Programme Award Assigned

Course Stream Code: MV1

Mode of Delivery: Full Time

No. of Semesters : 2

NFQ Level: 9

EQF Level: 7

EHEA Level: Second Cycle

Embedded Award: No

Valid From: 2017-18 (01-09-17 – 31-08-18)

Course: Master of Biomedical Science

Discipline: College of Science

Location: NUIG

Course Stream Director: TERRY SMITH

Educational Aim of Course Stream: n/a

Clearing House Code: GYS031.


Semester Schedules

Code: 1MV1 / Location: NUIG / 90 ECTS / Semester 1

Optional

Mod Code Module Title Co-ordinator Level ECTSCredits

FT ContactHours

PT ContactHours

WrittenAssessment

ContinuousAssessment

Oral, AudioVisual orPracticalAssessment

Department-basedAssessment

Research Study Abroad Computer-basedAssessment

AN230 Human BodyStructure(Approved)

8 5 2.00 0.00 0 30 0 0 0 0 70

BG5104 ProteinTechnology(Approved)

9 5 1.25 0.00 0 0 0 100 0 0 0

SI317 Human BodyFunction(Approved)

8 10 2.67 0.00 70 30 0 0 0 0 0

PM208 FundamentalConcepts inPharmacology(Approved)

8 5 1.83 0.00 0 30 0 0 0 0 70

BES5102 Cell &MolecularBiology:AdvancedTechnologies(Approved)

9 5 1.00 0.00 0 0 0 100 0 0 0


Core


FT ContactHours

PT ContactHours

WrittenAssessment





BES556 Research &Minor Thesis(Approved) (Part 1 of 2 )

9 30 0.00 0.00 0 0 0 0 100 0 0

BME405 TissueEngineering(Approved)

8 5 2.67 0.00 40 60 0 0 0 0 0

PH339 Radiationand MedicalPhysics(Approved)

8 5 2.50 0.00 80 20 0 0 0 0 0

BES513 Materials,Science &Biomaterials(Approved)

9 5 2.00 0.00 50 50 0 0 0 0 0

BES5103 AppliedBiomedicalSciences(Approved) (Part 1 of 2 )

9 5 2.63 0.00 0 100 0 0 0 0 0

MG529 IntroductionTo Business(Approved)

N/A 10 0.00 0.00 0 100 0 0 0 0 0

Group not available to select online

Mod Code ModuleTitle

Co-ordinator Level ECTSCredits

FT ContactHours

PT ContactHours

WrittenAssessment





BES519 ScientificWriting(Approved)

9 5 7.00 0.00 0 0 0 100 0 0 0


Code: 1MV1 / Location: NUIG / 90 ECTS / Semester 2

Optional


FT ContactHours

PT ContactHours

WrittenAssessment





BME502 AdvancedTissueEngineering(Approved)

9 5 2.50 0.00 0 100 0 0 0 0 0

MA324 Introduction toBioinformatics(Honours)(Approved)

8 5 3.00 0.00 70 30 0 0 0 0 0

BES5105 Literatureanalysis andpresentationskills inBiomedicalResearch(Approved)

9 5 0.50 0.00 0 100 0 0 0 0 0

Core


FT ContactHours

PT ContactHours

WrittenAssessment





BES5104 RegulatoryCompliance inHealthcareManufacturing(Approved)

9 10 4.00 0.00 0 100 0 0 0 0 0

BES554 MolecularMedicine(Approved)

9 5 2.00 0.00 0 100 0 0 0 0 0

BES556 Research &Minor Thesis(Approved) ( Part2 of 2 )

9 30 0.00 0.00 0 0 0 0 100 0 0

BES5103 AppliedBiomedicalSciences(Approved) ( Part2 of 2 )

9 5 2.63 0.00 0 100 0 0 0 0 0

Year 1 Awards :

Degree of Master of Science


PO DeliveryNo Course Stream Outcomes Data has been attached to this Course Stream yet.


Who Can AccessStaff Member Staff Number

CORA COSTELLO 0023560S

OLIVE MILLS 0104261S

CLAIRE MITCHELL 0023293S

YURY ROCHEV 0101438S

TERRY SMITH 0060798S

MARY NÍ FHLATHARTAIGH 0112575S

BRENDAN HARHEN 0103643S

WILLIAM BRENNAN 0025663S

AN230: Human BodyStructure( Semester:1 Optional )

Module Details

Title Short: Human Body Structure APPROVED

Language of Instruction: English

Module Code: AN230

ECTS Credits: 5

NFQ Level: 8

EQF Level: 6

EHEA Level: First Cycle

Valid From: 2017-18 (01-09-17 – 31-08-18)

Teaching Period: Semester 1

Module Delivered in 13 programme(s)

Module Owner: DARA CANNON

Module Discipline: AN - Anatomy

Module Description: Human Body Structure is delivered by the anatomy department to students at the first, second and masterslevel in university for whom anatomy is not a core degree element who require a sound basic knowledge ofthe structure of the human body. The content will cover topics including the following: * Organisation ofhuman body, anatomical terminology, the principles of support and movement, the control systems of thehuman body, maintenance and continuity of the body and finally, biomechanics and functional anatomy ofthe limbs.

Learning Outcomes

On successful completion of this module the learner will be able to:

LO1 Established a sound basic knowledge of the organization and structure of the human body including the location andanatomical relations of the major organ systems

LO2 Developed a basic understanding of the principles of support and movement, the control systems of the body, maintenanceand continuity of the human body.

LO3 Understand and describe the biomechanics and functional anatomy of the human limbs and musculoskeletal system

LO4 Explain how specific aspects of human anatomy relate to your field of study

LO5 Begun to develop your ability to look up and synthesize anatomical subject matter in a self-directed manner


Module Content & Assessment

Indicative Content

Unit 1: Organization, Terminology & Principles of Support & MovementThis unit will acclimatize you to anatomical terminology, introduce the general organization of the human body and the cover thefundamental structure of cells and tissues, including muscle, introduce the skeleton, bones and joints.

Unit II: Control Systems of the Human BodyThis unit covers the control systems of the human body including the nervous system (brain, spinal cord and autonomic nervous system),our special senses (eye and ear), and the endocrine system (hormones that control the body).

Unit III: Maintenance & Continuity of the Human BodyThe maintenance and continuity systems of the body are covered in unit three and include the heart and blood vessels, the lungs, digestionand elimination as well as the human reproductive systems.

Unit IV: Biomechanics & Functional Anatomy of the MSK SystemFinally, the biomechanics of and the musculoskeletal systems of the upper and lower limbs are a particular focus of the final and forth unitfocusing on functional anatomy.

No Written Assessment

Continuous Assessment

AssessmentType

AssessmentDescription

Outcomeaddressed

% oftotal

MarksOut of

PassMarks

Sitting AssessmentPeriod

AssessmentDate

Duration Mandatory

ContinuousAssessment1

In -ClassTests &MarkedStudyTasks

1,2,3,4,5 30.00 100 0 FirstSitting

Semester 1 n/a 0 True

No Oral, Audio Visual or Practical Assessment

No Department-based Assessment

No Research

No Study Abroad

Computer-based Assessment

AssessmentType


Outcomeaddressed

% oftotal

MarksOut of

PassMarks


AssessmentDate

Duration Mandatory

ComputerBased -Paper 1

N/A 1,2,3,4 70.00 100 0 FirstSitting

Semester 1 n/a 2:00 True

Assessment is marked as bondable but has no matching assessments


N/A 1,2,3,4 100.00 100 0 SecondSitting

Autumn n/a 2:00 True


The institute reserves the right to alter the nature and timings of assessment



Module Workload

Workload: Full Time

Workload Type WorkLoad Description LearningOutcomes

Hours Frequency AverageWeeklyLearnerWorkload

Independent Learning Pre-Reading 1,2,3,4,5 2 EveryWeek

2.00

Lecture No Description 1,2,3,4 2 EveryWeek

2.00

Independent & DirectedLearning (Non-contact)

Self Study 1,2,3,4,5 6 EveryWeek

6.00

Total Hours 10.00

Total Weekly Learner Workload 10.00

Total Weekly Contact Hours 2.00

This module has no Part Time workload.

Module Resources

Recommended Book Resources

Gerard J. Tortora, Bryan Derrickson., Introduction to the human body, 10 Ed., New York; Wiley [ISBN: 9781118583180]

Supplementary Book Resources

Michael McKinley,Valerie O'Loughlin,Ronald Harris,Elizabeth Pennefather-O'Brien 2014, Human Anatomy, 4th Ed., 8-12, McGraw-Hill Science/Engineering/Math [ISBN: 9780073525730]

This module does not have any article/paper resources

Other Resources

Software Free on Campus Network: IMAIOS E-AnatomyE-Anatomyhttps://www.imaios.com/en/e-Anatomy

https://www.imaios.com/en/e-Anatomy

Module Full Time Equivalent


Discipline %

Anatomy 100

Module Delivered in

Course Stream Code Course Stream Title

BG1 BG1 Bachelor of Engineering (Biomedical Engineering) (Approved)

BPD BPD1 Bachelor of Science (Podiatry) (Approved)

BPO1 BPO1 B.Sc. (Hons) Podiatric Medicine (Approved)

EM1 EM1 Erasmus (Approved)

MSR1 MSR1 Master of Science (Regenerative Medicine) (Approved)

MV1 MV1 Master of Science (Biomedical Science) (Approved)

MV3 MV3 Postgraduate Certificate in Science (Biomedial Science) (Draft)

MV9 MV9 Postgraduate Diploma (Biomedical Science) (Approved)

OA1 OA1 Visiting Students (Approved)

OT1 OT1 B.Sc. Degree (Occupational Therapy) (Approved)

PY1 PY1 Master of Science (Medical Physics) (Approved)

PY9 PY9 PG Diploma Medical Physics (Draft)

SWB1 SWB1 Science Without Borders (Approved)

Module Instructors

Module Instructors

Staff Member Staff Email

ALEXANDER BLACK [email protected]

PETER DOCKERY [email protected]

MARK FOLEY [email protected]

LINDA HOWARD [email protected]

FIONA LOWRY [email protected]

PATRICK MCGARRY [email protected]

CAROLINE DAWN MCINTOSH [email protected]

MARY NÍ FHLATHARTAIGH [email protected]

DARA CANNON [email protected]

FIDELMA GALLEN [email protected]

BG5104: Protein Technology( Semester:1 Optional )

Module Details

Title Short: Protein Technology APPROVED

Module Code: BG5104

ECTS Credits: 5

NFQ Level: 9

EQF Level: 7


Valid From: 2016-17 (01-09-16 – 31-08-17)

Teaching Period: Spring


Module Owner: MARY NÍ FHLATHARTAIGH

Module Discipline: MI - Microbiology

Module Description: This module will cover topics on the application of protein biology to Biotechnology. This includes principlesof protein production and purification, proteomic analysis, protein glycobiology and industrial scale-up ofprotein purification. This module is assessed by written examination in the SPRING exam session.

Learning Outcomes


LO1 discuss the implementation and usefulness of proteomics to biological research

LO2 evaluate and design protein production, extraction and purification strategies

LO3 appraise the many roles glycans play in health and diseases, as well as in clinical and industrial applications

LO4 describe and propose solutions to bottlenecks associated with the scale up of recombinant protein production from lab toindustrial scale

LO5 demonstrate knowledge and understanding of industrial enzymes



Indicative Content

ProteomicsPrinciples and practice of proteomics

Principles of protein productionProtein sources, extraction and purification

GlycobiologyGlycans are involved in all cell-cell communications in health and diseases and the glycans on proteins determine their functions and half-life. The lectures will cover how glycans are synthesised in eukaryotic cells and explore the many roles played by these sugars in health anddiseases as well as industrial processes.

Recombinant protein production at an industrial scaleThe lectures address issues related to scale up of the expression and purification of recombinant proteins from research lab scale to large-scale industrial production settings

Industrial enzymesKey concepts in industrial enzyme applications and production. Examples of the application and production of selected industrial enzymes.

Written Assessment

AssessmentType


Outcomeaddressed

% oftotal

MarksOut of

PassMarks


AssessmentDate

Duration Mandatory

Paper 1 -Written

N/A 1,2,3,4,5 100.00 0 0 SecondSitting



No Continuous Assessment


Department-based Assessment

AssessmentType


Outcomeaddressed

% oftotal

MarksOut of

PassMarks


AssessmentDate

Duration Mandatory

DepartmentalAssessment1

N/A 1,2,3,4,5 100.00 100 0 FirstSitting

Spring n/a 0 True

No Research

No Study Abroad

No Computer-based Assessment




Module Workload

Workload: Full Time



Lecture No Description 1,2,3,4,5 15 PerSemester

1.25


Self Study 1,2,3,4,5 85 PerSemester

7.08

Total Hours 100.00




Module Resources

This module does not have any book resources


This module does not have any other resources



Discipline %

Microbiology 100

Module Delivered in


MT1 MT1 Master of Science (Biotechnology) (Approved)

MT2 MT2 Master of Science (Biotechnology) (P/T) (Approved)



SPS1 SPS1 Structured Ph.D. (Science) (Approved)

Module Instructors

Module Instructors


AOIFE BOYD [email protected]

CONOR O'BYRNE [email protected]

CINDY SMITH [email protected]

GERARD WALL [email protected]


MICHELLE KILCOYNE [email protected]

LOKESH JOSHI [email protected]

SI317: Human Body Function

( Semester:1 Optional )

Module Details

Title Short: Human Body Function APPROVED


Module Code: SI317

ECTS Credits: 10

NFQ Level: 8

EQF Level: 6


Valid From: 2016-17 (01-09-16 – 31-08-17)



Module Owner: Fiona Byrne

Module Discipline: SI - Physiology

Module Description: The ‘Human Body Function’ module teaches students the complex nature of how the mammalian bodyfunctions through the study of its component organ systems. Specifically, the following areas are covered:Body fluids and fluid compartments, haematology, nerve and muscle physiology, cardiovascular physiology,respiratory physiology, immunology and endocrinology.

Learning Outcomes


LO1 Know the distribution of water between the body fluid compartements and understand the role of body water in cell andsystem function.

LO2 Know the components of blood, understand the process of blood clotting and understand the principles of the ABO andrhesus blood groups.

LO3 Know the structure and function of nerve and muscle cells.

LO4 Understand how a nerve impulse is generated and propagated.

LO5 Understand the process of muscle contraction, and how nerves can stimulate muscle cells.

LO6 Understand the autonomic nervous system.

LO7 Know the structure and function of the heart and its electrophysiology, focusing on the electrical and mechanical events ateach stage of the cardiac cycle.

LO8 Know the importance of blood pressure, and understand the basic principles of regulation.

LO9 Understand how breathing is performed and know the volumes and capacities associated with respiration.

LO10 Understand how oxygen and carbon dioxide are transported, and how oxygen delivery is regulated and controlled.

LO11 Understand the basics of hormone function, with a focus on glucose metabolism and the functions of growth hormone.

LO12 Understand the basics of immune defense.

LO13 Know the divisions of the central nervous system and have a basic knowledge of how the different areas function.




Indicative Content

Human Body FunctionThis module is a fundamental course in Physiology. Its aim is to allow students to study some of the main principles underlying health anddisease. It provides an introduction to haematology, cardiac function, nerve and muscle function, lung function and the hormones.

Written Assessment

AssessmentType


Outcomeaddressed

% oftotal

MarksOut of

PassMarks


AssessmentDate

Duration Mandatory

Paper 1 -Written

N/A 1,2,3,4,5,6 70.00 100 0 FirstSitting



Paper 1 -Written

N/A 1,2,3,4,5,6 100.00 100 0 SecondSitting




AssessmentType


Outcomeaddressed

% oftotal

MarksOut of

PassMarks


AssessmentDate

Duration Mandatory


N/A 7,8,9,10,11,12,13 30.00 100 0 FirstSitting




No Research

No Study Abroad







Module Workload

Workload: Full Time

Workload Type WorkLoad Description Learning Outcomes Hours Frequency AverageWeeklyLearnerWorkload

Lecture 1 hour duration 1,2,3,4,5,6,7,8,9,10,11,12,13 32 PerSemester

2.67

Independent &Directed Learning(Non-contact)

Formative assessments are provided andtextbook recommended to promote regularstudy.

1,2,3,4,5,6,7,8,9,10,11,12,13 150 PerSemester

12.50

Total Hours 182.00




Module Resources


Stuart Ira Fox, Human Physiology

Tortora & Derrickson, Introduction to the Human Body, 10th Edition Ed.





Discipline %

Physiology 100

Module Delivered in



BG2 BG2 Bachelor of Engineering (Biomedical Engineering) Purdue Exchange Programme (Approved)

BG3 BG3 Bachelor of Engineering (Biomedical Engineering) International Exchange Programme (Approved)

BPD BPD1 Bachelor of Science (Podiatry) (Approved)

BPO1 BPO1 B.Sc. (Hons) Podiatric Medicine (Approved)

BS9 BS9 B.Sc. Degree (Undenominated) (Approved)


EST11 EST11 M.Eng.Sc.Degree Taught (F/T) (Approved)

EST12 EST12 M.Eng.Sc.Degree Taught (P/T) (Approved)





OS3 OS3 Occasional Science (3rd Year) (Approved)

OT1 OT1 B.Sc. Degree (Occupational Therapy) (Approved)

PY1 PY1 Master of Science (Medical Physics) (Approved)

PY9 PY9 PG Diploma Medical Physics (Draft)

SL1 SL1 Bachelor of Science (Speech and Language Therapy) (Approved)

SPE1 SPE1 Structured PhD (Engineering) (Approved)

SPE2 SPE2 Structured PhD (Engineering) part time (Approved)


Module Instructors

Module Instructors


KAREN DOYLE [email protected]

LOUISE ANN HORRIGAN [email protected]

AILISH HYNES [email protected]

FIONA LOWRY [email protected]

CAROLINE DAWN MCINTOSH [email protected]

LEO QUINLAN [email protected]

MICHELLE ROCHE [email protected]

AMANDA WALSH [email protected]

BETH MALLARD [email protected]

NICOLE BURNS [email protected]

KARL MCCULLAGH [email protected]

BRENDAN HIGGINS [email protected]

ANTONY WHEATLEY [email protected]

Fiona Byrne [email protected]

BRIAN MCDONAGH [email protected]

PM208: FundamentalConcepts in Pharmacology( Semester:1 Optional )

Module Details

Title Short: Fundamental Concepts in Pharmacology APPROVED

Module Code: PM208

ECTS Credits: 5

NFQ Level: 8

EQF Level: 6


Valid From: 2016-17 (01-09-16 – 31-08-17)



Module Owner: MAURA GREALY

Module Discipline: PM - Pharmacology

Module Description: This module introduces students to fundamental pharmacological concepts of pharmacodynamics andpharmacokinetics. A combination of lectures, tutorials and workshops will be used.

Learning Outcomes


LO1 describe the main drug targets

LO2 interpret dose response curves for agonists, antagonists, inverse agonists

LO3 calculate molarities, concentrations, volumes required in making solutions

LO4 access and critically analyse and interpret pharmacological data

LO5 describe the processes of absorption, distribution, metabolism and excretion for specific drugs

LO6 explain the effects of different routes of administration on absorption of drugs, and effects of food and drug interactions ondrug disposition

LO7 derive pharmacokinetic data and use them to predict clinical properties of drugs



Indicative Content

Fundamental Concepts in PharmacologyThis module introduces students to core concepts in Pharmacology. These include Pharmacokinetics: how drugs are administered,absorbed, distributed around the body, metabolized and excreted; and Pharmacodynamics: how drugs act on their targets in the body, forinstance activating or inhibiting proteins, effects of increasing dose, and the clinical consequences of both drug pharmacdynamics andpharmackinetics.



AssessmentType


Outcomeaddressed

% oftotal

MarksOut of

PassMarks


AssessmentDate

Duration Mandatory


n/a 1,2,3,4,5,6,7 30.00 100 0 FirstSitting



There is norepeatsitting of theCA. CAresults arecarriedforwardfrom 1stsitting.

1,2,3,4,5,6,7 30.00 100 0 SecondSitting

Autumn n/a 0 True



No Research

No Study Abroad

Computer-based Assessment

AssessmentType


Outcomeaddressed

% oftotal

MarksOut of

PassMarks


AssessmentDate

Duration Mandatory


N/A 1,2,3,4,5,6,7 70.00 100 0 FirstSitting




N/A 1,2,3,4,5,6,7 70.00 100 0 SecondSitting






Module Workload

Workload: Full Time



Lecture 1 hour duration 1,2,3,4,5,6,7 16 PerSemester

1.33

Tutorial 2 hour duration 1,2,3,4,5,6,7 2 PerSemester

0.17

Lab 1 hour duration 1,2,3,4,5,6,7 4 PerSemester

0.33


No Description 1,2,3,4,5,6,7 80 PerSemester

6.67

Total Hours 102.00




Module Resources


Rang, H.P., Dale, Ritter, Flower & Henderson 2011, Pharmacology, 7th Edition Ed., Churchill Livingstone

Golan, D.E., et al 2011, Principles of Pharmacology, 3rd edition. Ed.

Harvey, R.A. 2011, Lippincott’s Illustrated Reviews Pharmacology, 5th Edition Ed.





Discipline %

Pharmacology 100

Module Delivered in


BO1 BO1 Bachelor of Science (Biomedical Science) (Approved)

BPC1 BPC1 Bachelor of Science (Biopharmaceutical Chemistry) (Approved)

BS1 BS1 Bachelor of Science Degree (Undenominated) (Approved)

BS9 BS9 B.Sc. Degree (Undenominated) (Approved)

BY2 BY2 Bachelor of Science (Biotechnology) (Hons.) (Approved)

CMT1 CMT1 Master of Science (Cellular Manufacturing and Therapy) (Approved)

CMT3 CMT3 Postgraduate Diploma in Science (Cellular Manufacturing and Therapy) (Approved)

CNS1 CNS1 Master of Science (Clinical Neuroscience) (Approved)



MST1 MST1 Master of Science (Toxicology) (Approved)






NP1 NP1 Master of Science (Neuropharmacology) (Approved)




Module Instructors

Module Instructors


EILÍS DOWD [email protected]

MAURA GREALY [email protected]

JOHN KELLY [email protected]

DECLAN PATRICK MCKERNAN [email protected]

UNA RYAN [email protected]

BES5102: Cell & MolecularBiology: AdvancedTechnologies( Semester:1 Optional )

Module Details

Title Short: Cell & Molecular Biology: Advanced Technologies APPROVED


Module Code: BES5102

ECTS Credits: 5

NFQ Level: 9

EQF Level: 7


Valid From: 2015-16 (01-09-15 – 31-08-16)




Module Discipline: NAT_SCI - School of Natural Sciences

Module Description: This module it is designed to bring students to a common point where all will share the appropriate biologicalknowledge and understanding of the fundamentals in cellular and molecular biology. The module explores thefollowing: cell composition; sub-cellular organelles; structure of DNA and RNA; transcription, protein synthesis;cell signalling, cell cycle; PubMed, DNA recombination, PCR; transformation, transfection; advanced molecularand cellular biology techniques.

Learning Outcomes


LO1 Illustrate the structure of DNA, explaining how DNA is replicated during the polymerase chain reaction technique.

LO2 Explain what is meant by the 'genetic code' and how it relates to protein synthesis.

LO3 Carry out a Pubmed search in order to identify molecules implicated in a human disease chosen by you.

LO4 Use the National cancer and Biological Institute (NCBI) nucleotide database to discover the DNA sequence encoding a protein ofyour choice and determine the length of the coding sequence and the number of amino acids contained in the protein encoded.

LO5 Describe how mammalian cell culture, PCR, DNA recombination, DNA plasmids, bacterial transformation and cellulartransfection can be used to understand protein function, localisation and possible relevance to disease.

LO6 Name the major structural components a mammalian cell and its constituent organelles.

LO7 List cytoskeletal, extracellular matrix, membrane and signalling proteins involved in mammalian cell interactions with each otherand with the extracellular environment.

LO8 Explain how the mitochondria meet the energy requirements of the cell.

LO9 Recognise cellular organelles involved in trafficking newly-synthesised proteins through and out of the cell.

LO10 Summarise the main steps and in the cell cycle and proteins involved in regulation of each stage.

LO11 Study and present on advanced technologies in cell and molecular biology



Indicative Content

Design of DNA Recombination on ExperimentAfter picking a protein relevant to a chosen disorder, students design a DNA recombination experiment, describing how protein encodingsequence is determined and how fluorescently tagged protein expression in mammalian cells can be achieved.

Students complete an in-class MCQ testFour online quizes - worth 5% each

Oral PresentationPresentation on advanced molecular and cellular techniques.





AssessmentType


Outcome addressed % oftotal

MarksOut of

PassMarks


AssessmentDate

Duration Mandatory


N/A 1,2,3,4,5,6,7,8,9,10,11 100.00 0 0 FirstSitting

Semester 1 n/a 0 False


N/A 1,2,3,4,5,6,7,8,9,10,11 100.00 0 0 SecondSitting

Autumn n/a 0 False

No Research

No Study Abroad





Module Workload

Workload: Full Time

Workload Type WorkLoad Description Learning Outcomes Hours Frequency AverageWeeklyLearnerWorkload

Lecture No Description 1,2,3,4,5,6,7,8,9,10,11 12 PerSemester

1.00


No Description 1,2,3,4,5,6,7,8,9,10,11 100 PerSemester

8.33

Total Hours 112.00




Module Resources


Geoffrey M. Cooper, Robert E. Hausman, The Cell: A Molecular Approach, 4th Ed Ed., ASM press


Other Resources

Dedicated course material provided by instructors: Dedicated course material provided by instructors

Openstax biology Concepts: Openstax biology Concepts



Discipline %

National Centre for Biomedical Engineering Science 100

Module Delivered in







Module Instructors

Module Instructors


UNA FITZGERALD [email protected]

TERRY SMITH [email protected]


BES556: Research & MinorThesis( Semester:1 Core )

Module Details

Title Short: Research & Minor Thesis APPROVED


Module Code: BES556

ECTS Credits: 30

NFQ Level: 9

EQF Level: 7


Valid From: 2016-17 (01-09-16 – 31-08-17)

Teaching Period: 12 months long




Module Description: The aim of this module is to provide students with hands-on experience of the rigours of scientific research,from experimental design, to execution of research. Students are educated as to best practice for reportingtheir results. Where possible, project work is carried out in the student’s place of work. Alternatively, asuitable project is provided on-campus.

Learning Outcomes


LO1 Carry out a literature search on topic of research project.

LO2 Design and follow an experimental plan projected to meet research objectives.

LO3 Monitor progress of research and adjust experimental plan accordingly.

LO4 Write good-quality masters thesis that summarises, in scientific language, the background to the research, methods used andresults.

LO5 Produce a postgraduate-level discussion of the research carried out, as part of the thesis write-up.

LO6 Communicate the rigorous approach to research that is required for successful completion of a research project.



Indicative Content

Laboratory- based (data- generating) workBuffer preparation, training in laboratory techniques (eg cell culture, PCR, protein analysis, Western blotting, SEM, EDX, mechanicaltesting, microscopy, DNA and RNA isolation. Specialist project-specific methods

Thesis write- upIntroduction, materials and methods, results, discussion, conclusions, future perspectives

Poster presentationPrepare poster summarising project aims, background, methods, results, conclusions. Answer questions posed by 2 examiners.





Research

AssessmentType


Outcomeaddressed

% oftotal

MarksOut of

PassMarks


AssessmentDate

Duration Mandatory

Thesis(Minor)

N/A 1,2,3,4,5,6 100.00 100 0 FirstSitting

Autumn n/a 0 True

No Study Abroad





Module Workload

Workload: Full Time




400 hours independent learning 1,2,3,4,5,6 400 PerSemester

33.33

Total Hours 400.00




Module Resources






Discipline %

School of Natural Sciences 100

Module Delivered in



Module Instructors

Module Instructors




BME405: Tissue Engineering( Semester:1 Core )

Module Details

Title Short: Tissue Engineering APPROVED


Module Code: BME405

ECTS Credits: 5

NFQ Level: 8

EQF Level: 6


Valid From: 2015-16 (01-09-15 – 31-08-16)



Module Owner: MANUS BIGGS

Module Discipline: BME - Biomedical Engineering

Module Description: Tissue Engineering (BME405) provides students with a comprehensive overview into the scope andpotential of this evolving field. This subject addresses the use of natural, synthetic and ceramic biomaterialsas scaffolds in tissue engineering; scaffold function, mechanics and fabrication methods; cellular processesthat contribute to tissue dynamics (e.g. morphogenesis, regeneration and repair); cell sources,mechanobiology and the use of bioreactors as biomimetic environments; in vitro and in vivo tissueengineering strategies for bone, cartilage and skin regeneration; and ethical and regulatory issues in tissueengineering. The subject integrates aspects of biomedical engineering, biomaterials science and biologyand provides functional clinical examples in this evolving area of technology.

Learning Outcomes


LO1 1. Discuss the sources, selection and potential challenges of using stem cells for tissue engineering.

LO2 2. Describe the role of cellular fate processes in tissue morphogenesis, repair and regeneration.

LO3 3. Describe the protein structures and composition of native extracellular matrices.

LO4 4. Discuss the functional requirements, design, fabrication and biomaterials selection criteria for tissue engineering scaffolds.

LO5 5. Predict the mechanical behaviour of tissue engineering scaffolds using cellular solids theory.

LO6 6. Use fluid mechanics theory to characterise mechanical stimulation in tissue engineering scaffolds in flow perfusionbioreactors.

LO7 7. Describe experimental techniques in mechanobiology and outline the role of mechanical signals on stem celldifferentiation.

LO8 8. Outline the steps involved in the development of in vitro and in vivo strategies for tissue engineering for bone, cartilage andskin regeneration.

LO9 9. Prepare a manuscript for peer-review according to the publication guidelines of a scientific journal.



Indicative Content

ContentTissue Engineering (BME405) provides students with a comprehensive overview into the scope and potential of this evolving field. Thissubject addresses the use of natural, synthetic and ceramic biomaterials as scaffolds in tissue engineering; scaffold function, mechanicsand fabrication methods; cellular processes that contribute to tissue dynamics (e.g. morphogenesis, regeneration and repair); cell sources,mechanobiology and the use of bioreactors as biomimetic environments; in vitro and in vivo tissue engineering strategies for bone, cartilageand skin regeneration; and ethical and regulatory issues in tissue engineering. The subject integrates aspects of biomedical engineering,biomaterials science and biology and provides functional clinical examples in this evolving area of technology.

Written Assessment

AssessmentType


Outcomeaddressed

% oftotal

MarksOut of

PassMarks


AssessmentDate

Duration Mandatory

Paper 1 -Written

n/a 1,2,3,4,5,6,7,8,9 40.00 0 0 FirstSitting



Paper 1 -Written

n/a 1,2,3,4,5,6,7,8,9 100.00 0 0 SecondSitting




AssessmentType


Outcomeaddressed

% oftotal

MarksOut of

PassMarks


AssessmentDate

Duration Mandatory


MCQ 20%,Lab Reports40%

1,2,3,4,5,6,7,8,9 60.00 0 0 FirstSitting




No Research

No Study Abroad





Module Workload

Workload: Full Time



Lecture No Description 1,2,3,4,5,6,7,8,9 24 PerSemester

2.00

Lab No Description 1,2,3,4,5,6,7,8,9 8 PerSemester

0.67


MCQs, report preparation and self-study 1,2,3,4,5,6,7,8,9 70 PerSemester

5.83

Total Hours 102.00




Module Resources


Principles of Tissue Engineering, R Lanza, R Langer and J Vacanti, Elsevier, (2007). Functional Tissue Engineering, F Guilak, DButler, S Goldstein, D Mooney (Editor) Springer (2007).

Recommended Article/Paper Resources

Tissue Engineering Part A, Mary Ann Liebert Inc. Publications Tissue Engineering Part B, Mary Ann Liebert Inc. PublicationsBiomaterials, Elsevier




Discipline %

Biomedical Engineering 100

Module Delivered in




MBM1 MBM1 MSC BIOMEDICAL ENGINEERING (Approved)






PRS1 PRS1 Postgraduate Research Studies (Approved)

SPD2 SPD2 Structured Ph.D (Medicine) P/T (Approved)




Module Instructors

Module Instructors



PETER MCHUGH [email protected]

LAOISE MCNAMARA [email protected]

MANUS BIGGS [email protected]

WENXIN WANG [email protected]

TED VAUGHAN [email protected]

PH339: Radiation andMedical Physics( Semester:1 Core )

Module Details

Title Short: Radiation and Medical Physics APPROVED


Module Code: PH339

ECTS Credits: 5

NFQ Level: 8

EQF Level: 6


Valid From: 2015-16 (01-09-15 – 31-08-16)



Module Owner: RAY BUTLER

Module Discipline: EP - Physics

Module Description: This module provides an introduction to the medical imaging and instrumentation aspects of real imagingenvironments, ranging from obsolete modalities to the modern tomographic imaging modalities (such asPET and SPECT). This module also covers the fundamental processes involved in forming images usingionising radiation, safety issues associated with ionising radiation and methods of radiation detection.

Learning Outcomes


LO1 define terms and explain concepts relating to the physical principles covered by this module’s syllabus.

LO2 describe the physical laws that connect terms and concepts covered by this module’s syllabus and, where appropriate, derivethe mathematical relationships between those terms and concepts.

LO3 outline applications to real-world situations of the physical principles covered by this module’s syllabus.

LO4 analyze physical situations using concepts, laws and techniques learned in this module.

LO5 identify and apply pertinent physics concepts, and appropriate mathematical techniques, to solve physics problems related tothe content of this module’s syllabus.

LO6 analyze data, interpret results and draw appropriate conclusions.

LO7 prepare scientific reports.



Indicative Content

PH339 Radiation & Medical PhysicsReview of basic nuclear physics. Radiation applications in industry. Interactions of radiation. Ultrasonic Imaging. Nuclear Medicine Imaging:Gamma cameras, SPECT and PET. New developments in Oncology Imaging. Radiation dosimetry. Radiation detectors & safety, Radiationin the environment.

Written Assessment

AssessmentType


Outcomeaddressed

% oftotal

MarksOut of

PassMarks


AssessmentDate

Duration Mandatory

Paper 1 -Written

N/A 1,2,3,4,5 80.00 0 0 FirstSitting



Paper 1 -Written

N/A 1,2,3,4,5 80.00 0 0 SecondSitting




AssessmentType


Outcomeaddressed

% oftotal

MarksOut of

PassMarks


AssessmentDate

Duration Mandatory


n/a 6,7 20.00 0 0 FirstSitting



EVERYTHINGfromSemester 1

6,7 20.00 0 0 SecondSitting

Autumn n/a 0 False



No Research

No Study Abroad





Module Workload

Workload: Full Time



Lecture 1 hour duration 1,2,3,4,5,6,7 24 PerSemester

2.00

Lab 2 hour duration 1,2,3,4,5,6,7 6 PerSemester

0.50


No Description 1,2,3,4,5,6,7 80 PerSemester

6.67

Total Hours 110.00




Module Resources






Discipline %

Physics 100

Module Delivered in


BPM1 BPM1 Bachelor of Science (Physics with Medical Physics) (Approved)

BPT1 BPT1 Bachelor of Science (Physics) Applied, Astrophysics, Biomedical, Theoretica (Approved)


MIG1 MIG1 Master of Science (Microscopy & Imaging) (Approved)

MIG9 MIG9 Postgraduate Diploma (Microscopy & Imaging) (Approved)





UL3 UL3 University of Limerick, Link to Learn (Science) (Approved)

Module Instructors

Module Instructors


MARK FOLEY [email protected]

BES513: Materials, Science &Biomaterials( Semester:1 Core )

Module Details

Title Short: Materials, Science & Biomaterials APPROVED


Module Code: BES513

ECTS Credits: 5

NFQ Level: 9

EQF Level: 7


Valid From: 2017-18 (01-09-17 – 31-08-18)




Module Discipline: CH - Chemistry

Module Description: The understanding of biomaterials encompasses fundamental knowledge of medicine, biology, chemistry,and material science. The biomaterials field rests on a foundation of engineering principles. There is also acompelling human side to the therapeutic and diagnostic application of biomaterials. This course addressesthe fundamental properties and applications of biomaterials (synthetic and natural) that are used in contactwith biological systems.

Learning Outcomes


LO1 Summarise the issues surrounding biocompatibility and ethics in the use of biomaterials.

LO2 Communicate the molecular and physiological features of biomaterials, including biomechanical properties, particularly inrelation to orthopaedic applications.

LO3 Describe the fundamentals of biopolymers – their structure, synthesis and characterisation.

LO4 List biomaterial applications in orthopaedics and cardiovascular medicine.



Indicative Content

No indicative content

Written Assessment

AssessmentType


Outcomeaddressed

% oftotal

MarksOut of

PassMarks


AssessmentDate

Duration Mandatory

Paper 1 -Written

N/A 50.00 100 40 FirstSitting



Paper 1 -Written

n/a 50.00 100 40 SecondSitting




AssessmentType


Outcomeaddressed

% oftotal

MarksOut of

PassMarks


AssessmentDate

Duration Mandatory


Assignment 30.00 100 40 FirstSitting



MCQ exam 1,2,3,4 20.00 100 40 FirstSitting



Assignmentand MCQexam -Markscarriedforwardfromcontinuousassessmentfirst sitting

50.00 100 40 SecondSitting

Autumn n/a 0 True



No Research

No Study Abroad





Module Workload

Workload: Full Time



Lecture 24 one hour lectures 24 PerSemester

2.00


No Description 80 PerSemester

6.67

Total Hours 104.00




Module Resources


Callister WD Jr. 2000, Materials Science and Engineering,, Wiley

Ratner B et al 2004, An Introduction to Materials in Medicine,, Academic Press





Discipline %

Chemistry 100

Module Delivered in


MIG1 MIG1 Master of Science (Microscopy & Imaging) (Approved)

MIG9 MIG9 Postgraduate Diploma (Microscopy & Imaging) (Approved)




Module Instructors

Module Instructors


KAREN KELLY [email protected]

YURY ROCHEV [email protected]



BES5103: AppliedBiomedical Sciences( Semester:1 Core )

Module Details

Title Short: Applied Biomedical Sciences APPROVED



ECTS Credits: 5

NFQ Level: 9

EQF Level: 7


Valid From: 2016-17 (01-09-16 – 31-08-17)

Teaching Period: Semester 1 and Semester 2




Module Description: Over the course of semesters 1 and 2, 5-6 laboratory practicals (depending on size of effort required) arecompleted. Topics may include cell culture, cell and molecular biology, scanning electron microscopy,biomechanics, mass spectrometry. Industry experts and visits outline recent advancements in biomedicalapplications and applications.

Learning Outcomes


LO1 Demonstrate ability to culture mammalian cells in vitro using aseptic technique, including quantifying cell number, assessingcell viability, passaging of cells, and analysis of protein expression in cells by Western blotting.

LO2 Apply molecular biology techniques, including purification of RNA from in vitro cultured cells, cDNA synthesis from purifiedRNA, real-time PCR amplification of target cDNAs, and quantification of RNA expression.

LO3 Explain the applications of SEM, Mass Spectrometry and biomedical engineering technologies in biomedical science.

LO4 Recommend equipment and protocol for testing mechanical properties of medical devices and tissue

LO5 Communicate verbally and in writing on biomedical science subjects



Indicative Content

Practical Laboratory ManualsStudents are provided with a practical laboratory manual for each practical session.



AssessmentType


Outcomeaddressed

% oftotal

MarksOut of

PassMarks


AssessmentDate

Duration Mandatory


Practical anddemonstrationreports

1,2,3,4,5 100.00 100 40 FirstSitting




No Research

No Study Abroad





Module Workload

Workload: Full Time




60 self directed learning 1,2,3,4 60 Over TwoSemesters

2.50

Lab 20 hr practicals 1,2,3,4 20 PerSemester

1.67

Lecture induction lecture and lectures with each practical anddemonstration. Industry visits and guest lectures.

1,2,3,4,5 23 Over TwoSemesters

0.96

Total Hours 103.00




Module Resources






Discipline %


Module Delivered in





Module Instructors

Module Instructors


ENDA O'CONNELL [email protected]



MG529: Introduction ToBusiness( Semester:1 Core )

Module Details

Title Short: Introduction To Business APPROVED

Module Code: MG529

ECTS Credits: 10

NFQ Level: N/A

EQF Level:

EHEA Level:

Valid From: 2014-15 (01-09-14 – 31-08-15)



Module Owner: CAROLINE O CONNELL

Module Discipline: MG - Management

Module Description: no description provided

Learning Outcomes

No learning outcomes provided



Indicative Content


Written Assessment

AssessmentType


Outcomeaddressed

% oftotal

MarksOut of

PassMarks


AssessmentDate

Duration Mandatory

Paper 1 -Written

N/A 100.00 0 0 SecondSitting



Paper 1 -Written





AssessmentType


Outcomeaddressed

% oftotal

MarksOut of

PassMarks


AssessmentDate

Duration Mandatory

Project 1 N/A 0.00 0 0 FirstSitting







No Research

No Study Abroad





Module Workload

This module has no Full Time workload.


Module Resources






Discipline %

Management 100

Module Delivered in


BY2 BY2 Bachelor of Science (Biotechnology) (Hons.) (Approved)

CD1 CD1 Master of Arts (Community Development) (Approved)

CMT1 CMT1 Master of Science (Cellular Manufacturing and Therapy) (Approved)

CMT3 CMT3 Postgraduate Diploma in Science (Cellular Manufacturing and Therapy) (Approved)


EN1 EN1 Master of Arts (English) (Approved)

MLP1 MLP1 MASTER OF ARTS (LITERATURE AND PUBLISHING) (Approved)







PGM1 PGM1 Postgraduate Diploma in Applied Microbiology (Approved)


Module Instructors

Module Instructors


REBECCA ANNE BARR [email protected]

AOIFE BOYD [email protected]

CYRIL CARROLL [email protected]

EMER CURTIS [email protected]

ANDREW FLAUS [email protected]

GERARD FLEMING [email protected]

RACHEL HILLIARD [email protected]


JULIA KILROY [email protected]

PATRICK LONERGAN [email protected]

DEARBHLA MOONEY [email protected]

STEPHEN REA [email protected]


AILEEN GILL [email protected]

MAURA O'CONNELL [email protected]


MARY COSGROVE [email protected]

BES519: Scientific Writing( Semester:1 Group notavailable to select online )

Module Details

Title Short: Scientific Writing APPROVED

Module Code: BES519

ECTS Credits: 5

NFQ Level: 9

EQF Level: 7


Valid From: 2015-16 (01-09-15 – 31-08-16)



Module Owner: UNA FITZGERALD

Module Discipline: NCBES - National Centre for Biomedical Engineering Science

Module Description: Based largely on a peer-review exercise, this module aims to provide students with an in-depthunderstanding of the process of scientific publication. Topics include journal author guidelines, review articletypes, how to write a good review article, how to produce a critique of a review article, how to write to ajournal editor and to respond to reviewer comments. Other apsects discussed include open accesspublishing, paper authorship, the ethics of publication, predatory journals

Learning Outcomes


LO1 Recognise and explain scientific writing

LO2 Describe the structure of different kinds of scientific papers

LO3 Summarise the different steps in the publication process

LO4 Explain the aims, principles and limiations of the peer review process

LO5 Produce a well-written critique of a mini-review paper

LO6 Respond to peer reviews and write a letter to a journal editor

LO7 Produce a well-written mini-review on a specialist topic

LO8 Define what is meant by 'journal impact factor' (IF)

LO9 Use Journal IFs and other journal information, to select appropriate journals for paper submission



Indicative Content

Draft mini- reviewProduce 1,500 - 3,000-word mini-review on assigned topic; find and attach nominated journal author information.

Produce Review critique(s)Produce at least 1 appropriately structured and worded mini-review critiqe.

Write Editor's letter and reviewer responseIn response to peer review, produce mock letter to a journal editor; produce appropriately structured and worded response to peer critiques.

Revise mini- reviewWrite reviesed mini-review, incorporating feedback from peers and from module director/tutors.

LecturesAttend lectures on range of topics relating to scientific writing

Group DiscussionsAttend at least 3 group discussions on assigned topics. Read and discuss assigned articles on scientific publication





AssessmentType


Outcomeaddressed

% oftotal

MarksOut of

PassMarks


AssessmentDate

Duration Mandatory


N/A 1,2,3,4,5,6,7,8,9 100.00 0 0 FirstSitting


No Research

No Study Abroad





Module Workload

Workload: Full Time



Lecture 7 one hour lectures 1,2,3,4,5,6,7,8,9 7 EveryWeek

7.00


Tutorials 1,2,3,4,5,6,7,8,9 4 PerSemester

0.33


Self directed study 1,2,3,4,5,6,7,8,9 90 PerSemester

7.50

Total Hours 101.00




Module Resources






Discipline %

National Centre for Biomedical Engineering Science 100

Module Delivered in


AIT1 AIT1 MSc Astronomical Instrumentation and Technology (Approved)

KET1 KET1 Masters (Research) Key Enabling Technologies (Approved)





SMD1 SMD1 Structured Doctor of Medicine (Approved)

SMD2 SMD2 Structured Doctor of Medicine (P/T) (Approved)

SPD1 SPD1 Structured Ph.D (Medicine) (Approved)


SPL1 SPL1 Structured Ph.D. (Health Sciences) (Approved)

SPL2 SPL2 Structured Ph.D (Health Sciences) P/T (Approved)

SPN1 SPN1 Structured Ph.D (Nursing & Midwifery ) (Approved)

SPN2 SPN2 Structured Ph.D (Nursing & Midwifery) P/T (Approved)


Module Instructors

Module Instructors






PETER SMITH [email protected]

BME502: Advanced TissueEngineering( Semester:2 Optional )

Module Details

Title Short: Advanced Tissue Engineering APPROVED


Module Code: BME502

ECTS Credits: 5

NFQ Level: 9

EQF Level: 7


Valid From: 2016-17 (01-09-16 – 31-08-17)



Module Owner: MANUS BIGGS

Module Discipline: BME - Biomedical Engineering

Module Description: Advanced Tissue Engineering (BME502) builds on the students understanding of the field of tissueengineering obtained through the first semester tissue engineering course. The subject allows for increasedinvolvement of the students in the field through project work and the planning and completion of laboratoryexperiments. Through regular feedback, the students will gain an appreciation of working in the field oftissue engineering. Specific lecture topics to be covered include bioactive materials, biomimetics andexperimental planning, as well as specific subfields of tissue engineering, such as neural, cardiovascularand vital organ regeneration.

Learning Outcomes


LO1 1. Describe the concepts of wound healing, immunoresponse and angiogenesis and their importance in the field of tissueengineering.

LO2 2. Design and complete an experiment to investigate a tissue engineering concept in vitro.

LO3 3. Describe in vitro and in vivo strategies for various sub-fields of tissue engineering, including, neural, cardiovascular andvital organ regeneration.

LO4 4. Discuss the merit of bioactive materials, biomemetics and biomaterial functionalisation in tissue engineering.

LO5 5. Prepare a grant application for the investigation of a tissue engineering related problem through the development of anovel method of treatment.



Indicative Content

ContentThe module builds on the students understanding of the field of tissue engineering obtained through the first semester tissue engineeringcourse. The subject allows for increased involvement of the students in the field through project work and the planning and completion oflaboratory experiments. Through regular feedback, the students will gain an appreciation of working in the field of tissue engineering.Specific lecture topics to be covered include bioactive materials, biomimetics and experimental planning, as well as specific subfields oftissue engineering, such as neural, cardiovascular and vital organ regeneration.



AssessmentType


Outcomeaddressed

% oftotal

MarksOut of

PassMarks


AssessmentDate

Duration Mandatory


LaboratoryExperimentDesign40%, GroupProject40%, In-class exam20%.

1,2,3,4,5 100.00 100 0 FirstSitting



Specified byDiscipline

1,2,3,4,5 100.00 100 0 SecondSitting

Autumn n/a 0 True



No Research

No Study Abroad





Module Workload

Workload: Full Time



Lecture No Description 1,2,3,4,5 20 PerSemester

1.67

Lab No Description 1,2,3,4,5 10 PerSemester

0.83


Lab report preparation, project presentations, self-study. 1,2,3,4,5 70 PerSemester

5.83

Total Hours 100.00




Module Resources


Principles of Tissue Engineering, Langer, Vacanti; Functional Tissue Engineering, Guilak

Recommended Article/Paper Resources

Tissue Engineering Part A, Tissue Engineering Part B, Biomaterials




Discipline %

Biomedical Engineering 100

Module Delivered in


KET1 KET1 Masters (Research) Key Enabling Technologies (Approved)

MBM1 MBM1 MSC BIOMEDICAL ENGINEERING (Approved)

MEB1 MEB1 Master of Engineering in Biomedical Engineering (Approved)





PRS1 PRS1 Postgraduate Research Studies (Approved)





Module Instructors

Module Instructors


PETER MCHUGH [email protected]

MANUS BIGGS [email protected]

MA324: Introduction toBioinformatics (Honours)( Semester:2 Optional )

Module Details

Title Short: Introduction to Bioinformatics (Honours) APPROVED

Module Code: MA324

ECTS Credits: 5

NFQ Level: 8

EQF Level: 6


Valid From: 2015-16 (01-09-15 – 31-08-16)



Module Owner: CATHAL SEOIGHE

Module Discipline: MA - Mathematics

Module Description: The course will give students an appreciation of the application of computers and algorithms in molecularbiology. This includes foundation knowledge of bioinformatics; the ability to perform basic bioinformatictasks; and to discuss current bioinformatic research with respect to human health.

Learning Outcomes


LO1 outline key bioinformatics principles and approaches

LO2 discuss the relevance of bioinformatics to medicine

LO3 obtain molecular sequence data from public repositories

LO4 implement key bioinformatics algorithms by hand on toy datasets

LO5 use bioinformatics software tools, including tools for sequence alignment, homology searching, phylogenetic inference andpromoter analysis;

LO6 describe key high throughput data generation technologies and the steps involved in data pre-processing and basic analysisof these data.



Indicative Content


Written Assessment

AssessmentType


Outcomeaddressed

% oftotal

MarksOut of

PassMarks


AssessmentDate

Duration Mandatory

Paper 1 -Written

N/A 1,2,3,4,5,6 70.00 0 0 FirstSitting



Paper 1 -Written

N/A 1,2,3,4,5,6 100.00 0 0 SecondSitting




AssessmentType


Outcomeaddressed

% oftotal

MarksOut of

PassMarks


AssessmentDate

Duration Mandatory


n/a 1,3,4,5 30.00 0 0 FirstSitting




No Research

No Study Abroad





Module Workload

Workload: Full Time



Lecture No Description 1,2,3,4,5,6 2 EveryWeek

2.00

Lab No Description 1,2,3,4,5,6 1 EveryWeek

1.00


Self Study 1,2,3,4,5,6 6 EveryWeek

6.00

Total Hours 9.00




Module Resources


David W Mount, Bioinformatics ; Sequence and Genome Analysis, CBS Publishers & Distributors [ISBN: 9788123909981]

Arthur M. Lesk, INTRODUCTION TO BIOINFORMATICS., OUP [ISBN: 9780195685251]

[edited by] Andreas D. Baxevanis, B. F. Francis Ouellette 2001, Bioinformatics, Wiley-Interscience New York [ISBN:9780471383901]





Discipline %

Mathematics 100

Module Delivered in


BMG1 BMG1 MSc (Biomedical Genomics) (Approved)

BMG9 BMG9 Postgraduate Diploma (Biomedical Genomics) (Approved)

BO2 BO2 Bachelor of Science (Biomedical Science) Honours (Approved)

CSG1 CSG1 MSc (Computational Genomics) (Approved)

CSG9 CSG9 Postgraduate Diploma (Computational Genomics) (Approved)




SMD1 SMD1 Structured Doctor of Medicine (Approved)

SMD2 SMD2 Structured Doctor of Medicine (P/T) (Approved)

SPD1 SPD1 Structured Ph.D (Medicine) (Approved)



Module Instructors

Module Instructors


NOELLE GANNON [email protected]

MARY KELLY [email protected]

COLLETTE MCLOUGHLIN [email protected]

CATHAL SEOIGHE [email protected]

Pilib O Broin [email protected]

BES5105: Literature analysisand presentation skills inBiomedical Research( Semester:2 Optional )

Module Details

Title Short: Literature analysis and presentation skills in Biomedical Research APPROVED



ECTS Credits: 5

NFQ Level: 9

EQF Level: 7


Valid From: 2017-18 (01-09-17 – 31-08-18)





Module Description: This module teaches the student how to critically analyse scientific literature, and to present their analysisclearly and concisely. Students will also learn how to conduct literature searches, and how to write atechnical report or literature review about biomedical science and research topics. This is relevant forassignments and the research dissertation and as well as developing vital technical writing skills necessaryfor a successful scientific career. Students will also develop their transferable skills on this interactivemodule through a range of written assignments and oral presentations.

Learning Outcomes


LO1 Discuss and critically analyse a range of scientific and biomedical science topics

LO2 Communicate verbally and in writing on scientific and biomedical science topics

LO3 Conduct and synthesise an academic literature search relevant to a proposed biomedical science topic

LO4 Present research data and findings in a critically reflective manner

LO5 Produce a well-written and referenced literature -review on a specific biomedical science topic



Indicative Content

Transferable skills trainingTraining and practice in transferable skills, e.g. presentation skills, scientific calculations and technical writing



AssessmentType


Outcomeaddressed

% oftotal

MarksOut of

PassMarks


AssessmentDate

Duration Mandatory


Assignments 1,2,3,4,5 100.00 100 40 FirstSitting



Assignments 1,2,3,4,5 100.00 100 40 SecondSitting

Autumn n/a 0 True



No Research

No Study Abroad





Module Workload

Workload: Full Time



Directed Learning Directed lectures and tutorials 1,2,3 21 PerSemester

1.75

Independent Learning Self-directed learning 1,2,3,4,5 74 PerSemester

6.17

Lecturer-SupervisedLearning (Contact)

Workshops 1,2,3,4 6 PerSemester

0.50

Total Hours 101.00




Module Resources






Discipline %


Module Delivered in




Module Instructors

Module Instructors



BES5104: RegulatoryCompliance in HealthcareManufacturing( Semester:2 Core )

Module Details

Title Short: Regulatory Compliance in Healthcare Manufacturing APPROVED



ECTS Credits: 10

NFQ Level: 9

EQF Level: 7


Valid From: 2016-17 (01-09-16 – 31-08-17)



Module Owner: TERRY SMITH


Module Description: This module aims to equip students with an introduction to the regulatory pathways for placing medicaldevices and pharmaceuticals on the market within the EU, US and globally. It explains the legislationapplicable and guidelines available to medical device and pharmaceutical manufacturers. There will be aparticular focus on the manufacturing processes and controls involved within these industries.

Learning Outcomes


LO1 Describe the scope and functions of the regulatory framework pertaining to pharmaceutical and medical devices includingmedical device classification.

LO2 Demonstrate a detailed understanding of the main US, EU and global regulations.

LO3 Understand concepts to enable learners to work effectively with regulatory affairs professionals.

LO4 Develop an understanding of how regulatory issues affect the manufacturing and development of medical device andpharmaceutical products.

LO5 Demonstrate knowledge of Good Manufacturing Practices and Quality Management Systems and related control processeswith respect to the medical device and pharmaceutical industry.

LO6 Describe the scope and functions of the processes for bringing a new drug to market, starting with drug discovery and theclinical trial process and ending in obtaining marketing approval.



Indicative Content




AssessmentType


Outcomeaddressed

% oftotal

MarksOut of

PassMarks


AssessmentDate

Duration Mandatory

CaseReport 1

Complete anonconformanceevent (NCE)form for amedical devicemanufacturingandpharmaceuticalmanufacturingissue.Demonstratewhere theissue showednoncompliance tothe relevantpart of 21CFRregulations.Complete theform in termsof disposition,product impactassessmentand correctiveandpreventativeaction.

2,4,5 10.00 100 40 FirstSitting



Describe howto classify amedical deviceof choicebased on therisks and justifythe mostappropriateregulatorypathway tobring to market

1,2,3 35.00 100 40 FirstSitting


CaseReport 2

Write an SOP(StandardOperatingProcedure) fora process in amedical deviceorpharmaceuticalmanufacturingcompany.Demonstratecompliance tothe documentcontrolprocedure bylistingappropriateapprovals.

5 10.00 100 40 FirstSitting


CaseReport 3

Demonstrateunderstandingof root causeand correctiveaction basedon a packagingproblem in amedical devicecompany to bediscussed inclass. Work inteams toevaluate theproblem andsuggestappropriatesolutions andcorrectiveactions in linewith the QMS.

4,5 10.00 100 40 FirstSitting



Write a reporton a drug ofyour choiceexplaining whythis particulardrug wasapproved.

1,2,6 35.00 100 40 FirstSitting




No Research

No Study Abroad





Module Workload

Workload: Full Time



Lecture Lectures and workshops 1,2,3,4,5,6 36 PerSemester

3.00


Blended learning 1,2,3,4,5,6 72 PerSemester

6.00

Independent Learning Independent self-directed learning 1,2,3,4,5,6 80 PerSemester

6.67

Tutorial No Description 1,2,3,4,5,6 12 PerSemester

1.00

Total Hours 200.00




Module Resources


John J. Tobin, Gary Walsh 2008, Medical Product Regulatory Affairs, 1st Ed., All, Wiley-VCH Weinheim, Germany [ISBN:9783527318773]


Other Resources

Website: FDAFDA Websitehttp://www.fda.gov/

Website: European Medicines Agency websiteEuropean Medicines Agency websitehttp://www.ema.europa.eu/ema/

http://www.fda.gov/

http://www.ema.europa.eu/ema/



Discipline %


Module Delivered in




Module Instructors

Module Instructors




OLIVIA MC DERMOTT [email protected]

BES554: Molecular Medicine( Semester:2 Core )

Module Details

Title Short: Molecular Medicine APPROVED


Module Code: BES554

ECTS Credits: 5

NFQ Level: 9

EQF Level: 7


Valid From: 2016-17 (01-09-16 – 31-08-17)





Module Description: The molecular mechanisms underlying diseases including cancer, immuno-deficient and neurodegenerativedisorders is described. The basis for gene and stem cell approaches to system regeneration is thensummarised. A poster preparation and presentation activity enables the investigation by students of aspectsmolecular medicine not directly covered in lectures., including the mechanisms underlying currenttreatments, the development of novel therapeutics, including gene or stem cell therapies.

Learning Outcomes


LO1 Depict challenges of drug discovery and how molecular mechanisms of action of current drugs vary.

LO2 Summarise the molecular mechanisms implicated in the development of diseases such as cancer, multiple sclerosis,Alzheimers disease, diabetes.

LO3 Explain the basis for current cancer treatments and medications used to treat the major neurodegenerative disorders.

LO4 Communicate the principles underlying the development of gene therapies and summarise the relative advanatges anddisadvantages of different gene delivery stratagies.

LO5 Compare the properties of stem cells isolated from different sources and give details of the clinical use of a stem cell basedtherapy

LO6 In cooperation with a fellow-student, produce a poster depicting signalling pathways associated with an acute or chronicdisorders, as well as current and experimental treatments.



Indicative Content

Drug DiscoveryChallenges of drug discovery

Neruodegenerative DisordersMultiple Sclerosis, Alzheimer's Disease, Parkinson's disease, Stroke; Other neurodegenerative disorders for poster activity

CancerOncogenes, cancer types, tumour suppressors, mutations, chemotherapy, apoptosis

Gene TherapyViral vectors, adenovirus, lentivirus, cloning, gene expression, regeneration

Stem Cell TherapyEmryonic stem cells, mescenchymal stem cells, induced pluripotent stem cells, stem cell culture, stem cell transplantaion

Poster ActivityJoint poster on neurodegenerative disorder/cancer



AssessmentType


Outcomeaddressed

% oftotal

MarksOut of

PassMarks


AssessmentDate

Duration Mandatory


Oralpresentationsand writtenassignments

1,2,3,4,5,6 100.00 100 40 FirstSitting



Assignmentandpresentations- Markscarriedforward fromcontinuousassessmentfirst sitting

1,2,3,4,5,6 100.00 100 40 SecondSitting

Autumn n/a 0 True



No Research

No Study Abroad





Module Workload

Workload: Full Time



Lecture 8 two hour lectures 1,2,3,4,5,6 16 PerSemester

1.33

Tutorial 8 hour Tutorials 1,2,3,4,5,6 8 PerSemester

0.67


Self Directed learning 1,2,3,4,5,6 80 PerSemester

6.67

Total Hours 104.00




Module Resources






Discipline %


School of Medicine 25

Module Delivered in






Module Instructors

Module Instructors




JILL MCMAHON [email protected]



MARK O'LOUGHLIN [email protected]

Date post:	11-May-2018
Category:	Documents
Upload:	truongdat
View:	219 times
Download:	0 times

Book of modules - NUI Galway€¦ · Book of modules MV1 - MV1 Master of ... Advanced Technologies...

Documents